Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47150 * 210.32281 * 3 2 1 5 5 C 1.37093 * 120.00515 * 263.89487 * 4 3 2 6 6 H 1.07993 * 120.00795 * 136.04112 * 5 4 3 7 7 C 1.38960 * 119.99412 * 316.03950 * 5 4 3 8 8 N 1.31409 * 120.00059 * 349.49704 * 7 5 4 9 9 Si 1.86801 * 119.99860 * 169.49648 * 7 5 4 10 10 H 1.48503 * 109.46946 * 59.99865 * 9 7 5 11 11 H 1.48494 * 109.47255 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47167 * 300.00340 * 9 7 5 13 13 C 1.34779 * 119.99874 * 83.89124 * 4 3 2 14 14 O 1.21292 * 119.99937 * 4.51450 * 13 4 3 15 15 C 1.50706 * 119.99920 * 184.51137 * 13 4 3 16 16 N 1.46895 * 112.85181 * 312.77464 * 15 13 4 17 17 C 1.53784 * 113.61152 * 181.58049 * 15 13 4 18 18 C 1.53951 * 87.01807 * 220.04978 * 17 15 13 19 19 C 1.53775 * 87.11455 * 25.36341 * 18 17 15 20 20 H 4.40637 * 5.51450 * 180.02562 * 4 1 2 21 21 H 1.09000 * 109.47061 * 330.32755 * 3 2 1 22 22 H 1.08998 * 109.47018 * 90.32179 * 3 2 1 23 23 H 0.97000 * 119.99567 * 180.02562 * 8 7 5 24 24 H 1.00904 * 111.00003 * 307.86367 * 16 15 13 25 25 H 1.00899 * 110.99922 * 71.81119 * 16 15 13 26 26 H 1.09002 * 113.61490 * 334.56502 * 17 15 13 27 27 H 1.08994 * 113.61445 * 105.47434 * 17 15 13 28 28 H 1.08997 * 113.53786 * 270.81183 * 18 17 15 29 29 H 1.08998 * 113.67065 * 139.93570 * 18 17 15 30 30 H 1.09002 * 113.62040 * 220.09083 * 19 18 17 31 31 H 1.09007 * 113.61892 * 89.18411 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.1931 0.6973 5 6 3.4808 2.3108 -0.0166 6 1 3.1693 3.2873 0.3237 7 6 4.2335 2.1873 -1.1781 8 7 4.7865 1.0349 -1.4832 9 14 4.4592 3.6593 -2.3058 10 1 5.1273 4.7562 -1.5602 11 1 5.2965 3.2686 -3.4682 12 1 3.1327 4.1234 -2.7855 13 6 3.2413 1.1913 2.0408 14 8 3.0128 0.1775 2.6662 15 6 3.6454 2.4491 2.7660 16 7 4.8113 3.1068 2.1610 17 6 3.7596 2.2721 4.2894 18 6 3.1076 3.6607 4.4188 19 6 2.4729 3.4051 3.0416 20 1 -1.0502 -0.0004 0.0000 21 1 3.0097 -0.8921 0.5087 22 1 3.0093 0.0066 -1.0276 23 1 5.3123 0.9489 -2.2939 24 1 5.5747 2.4568 2.0475 25 1 4.5680 3.5360 1.2809 26 1 3.1444 1.4625 4.6822 27 1 4.7880 2.2364 4.6489 28 1 3.8262 4.4802 4.4230 29 1 2.3812 3.7292 5.2284 30 1 2.4639 4.2827 2.3952 31 1 1.5052 2.9058 3.0926 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300900171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = 30.185898 kcal Electronic energy + Delta-G solvation = -15659.786667 eV Core-core repulsion = 13136.034943 eV Total energy + Delta-G solvation = -2523.751723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35459 -38.64478 -36.96792 -34.35156 -33.32832 -32.22628 -28.56242 -27.16051 -26.54286 -25.16971 -21.64649 -20.14971 -19.57053 -18.64947 -17.85721 -16.80725 -16.49104 -16.22066 -15.84117 -15.55889 -15.14471 -14.35836 -14.16857 -13.92628 -13.40326 -13.21053 -12.91068 -12.75270 -12.47161 -12.18513 -12.00580 -11.60929 -11.51719 -11.27364 -11.14452 -10.91549 -10.81946 -9.71877 -9.19004 -8.34827 -6.22340 1.44595 1.49435 1.56922 1.71293 1.94518 1.95197 2.32468 2.97054 3.07487 3.57717 3.67653 3.81552 3.98790 4.03704 4.31192 4.55068 4.76232 4.81469 4.92166 5.03737 5.07477 5.12624 5.12699 5.35633 5.40723 5.55181 5.95107 6.25686 6.37405 6.68350 6.71661 7.03659 7.46954 7.91725 8.68319 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.013671 C = 0.010013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.185668 B = 2047.670379 C = 2795.693612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.224 4.224 3 C 0.212 3.788 4 N -0.444 5.444 5 C -0.354 4.354 6 H 0.099 0.901 7 C 0.010 3.990 8 N -0.894 5.894 9 Si 0.982 3.018 10 H -0.251 1.251 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.447 3.553 14 O -0.633 6.633 15 C 0.087 3.913 16 N -0.799 5.799 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.118 4.118 20 H 0.257 0.743 21 H 0.054 0.946 22 H 0.112 0.888 23 H 0.275 0.725 24 H 0.334 0.666 25 H 0.359 0.641 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.782 6.355 2.951 7.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.225 4.225 3 C 0.089 3.911 4 N -0.162 5.162 5 C -0.481 4.481 6 H 0.116 0.884 7 C -0.194 4.194 8 N -0.530 5.530 9 Si 0.805 3.195 10 H -0.174 1.174 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.235 3.765 14 O -0.519 6.519 15 C -0.009 4.009 16 N -0.332 5.332 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.156 4.156 20 H 0.273 0.727 21 H 0.072 0.928 22 H 0.130 0.870 23 H 0.085 0.915 24 H 0.145 0.855 25 H 0.178 0.822 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.741 6.250 3.710 7.768 hybrid contribution -0.063 -0.834 -1.797 1.982 sum -2.804 5.416 1.913 6.392 Atomic orbital electron populations 1.25654 0.96455 0.99444 1.00978 1.24478 0.96063 1.01363 1.00626 1.18189 0.82981 0.89424 1.00536 1.43548 1.55559 1.12876 1.04168 1.19593 1.33224 0.86633 1.08659 0.88359 1.26297 0.93538 1.00135 0.99435 1.69905 1.30638 1.26523 1.25921 0.85150 0.78400 0.78331 0.77642 1.17437 1.21151 1.19733 1.22429 0.79170 0.91548 0.83363 1.90467 1.56889 1.36527 1.68036 1.22031 0.94093 0.90067 0.94750 1.59198 1.06227 1.34109 1.33706 1.22832 1.01707 0.98443 0.92202 1.22642 0.99531 0.96390 0.95563 1.22847 0.95360 0.98197 0.99192 0.72691 0.92814 0.87021 0.91531 0.85517 0.82167 0.91025 0.90773 0.88363 0.89847 0.90207 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.90 19.25 74.32 1.43 -6.47 16 2 C -0.22 -10.44 13.61 31.13 0.42 -10.02 16 3 C 0.21 10.84 5.35 84.58 0.45 11.29 16 4 N -0.44 -22.45 2.47 -645.42 -1.59 -24.04 16 5 C -0.35 -16.84 6.56 84.04 0.55 -16.29 16 6 H 0.10 4.43 6.14 -2.91 -0.02 4.41 16 7 C 0.01 0.47 5.11 84.93 0.43 0.90 16 8 N -0.89 -45.31 11.37 21.67 0.25 -45.07 16 9 Si 0.98 37.02 29.57 68.60 2.03 39.04 16 10 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 11 H -0.29 -10.91 7.11 99.48 0.71 -10.21 16 12 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 13 C 0.45 22.31 6.88 87.66 0.60 22.91 16 14 O -0.63 -35.34 15.54 -3.07 -0.05 -35.39 16 15 C 0.09 3.51 0.87 3.31 0.00 3.51 16 16 N -0.80 -30.27 8.75 -152.43 -1.33 -31.61 16 17 C -0.11 -4.00 7.23 31.18 0.23 -3.78 16 18 C -0.10 -2.96 8.00 31.18 0.25 -2.71 16 19 C -0.12 -4.04 7.14 31.12 0.22 -3.82 16 20 H 0.26 6.65 7.80 -4.41 -0.03 6.61 16 21 H 0.05 2.90 7.55 -2.39 -0.02 2.88 16 22 H 0.11 5.92 5.71 -2.39 -0.01 5.90 16 23 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 24 H 0.33 13.36 9.02 -89.69 -0.81 12.56 16 25 H 0.36 14.02 5.64 -89.69 -0.51 13.52 16 26 H 0.07 2.75 7.41 -2.39 -0.02 2.74 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 28 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.07 2.42 8.09 -2.38 -0.02 2.40 16 Total: -1.00 -60.08 267.26 3.74 -56.34 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.16 Total: 45.18 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.60 Total: -4.46 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -2.68 Total: -100.72 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.05 Total: -35.39 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.04 kcal Total: -60.08 3.74 -56.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300900171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.529 kcal (2) G-P(sol) polarization free energy of solvation -60.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds