Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47064 * 86.43799 * 3 2 1 5 5 C 1.37102 * 119.99729 * 264.38042 * 4 3 2 6 6 H 1.07997 * 119.99728 * 196.29470 * 5 4 3 7 7 C 1.38946 * 119.99964 * 16.30129 * 5 4 3 8 8 N 1.31419 * 120.00147 * 20.58932 * 7 5 4 9 9 Si 1.86800 * 120.00107 * 200.58794 * 7 5 4 10 10 H 1.48501 * 109.46985 * 84.95934 * 9 7 5 11 11 H 1.48500 * 109.47063 * 204.95817 * 9 7 5 12 12 H 1.48494 * 109.47161 * 324.95632 * 9 7 5 13 13 C 1.34776 * 120.00168 * 84.38230 * 4 3 2 14 14 O 1.21294 * 119.99827 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00167 * 359.97438 * 13 4 3 16 16 H 1.08994 * 110.36316 * 317.64825 * 15 13 4 17 17 C 1.54376 * 110.40960 * 80.00188 * 15 13 4 18 18 C 1.54263 * 105.05932 * 142.75055 * 17 15 13 19 19 C 1.54377 * 105.05974 * 359.97438 * 18 17 15 20 20 N 1.48560 * 110.50976 * 195.23532 * 15 13 4 21 21 H 4.40638 * 5.51285 * 180.02562 * 4 1 2 22 22 H 1.08993 * 109.47523 * 326.43613 * 3 2 1 23 23 H 1.09007 * 109.47204 * 206.42901 * 3 2 1 24 24 H 0.96999 * 120.00212 * 180.02562 * 8 7 5 25 25 H 1.09005 * 110.32385 * 23.85167 * 17 15 13 26 26 H 1.08997 * 110.41097 * 261.68895 * 17 15 13 27 27 H 1.09004 * 110.32398 * 241.10264 * 18 17 15 28 28 H 1.08999 * 110.40627 * 118.94121 * 18 17 15 29 29 H 1.08998 * 110.41038 * 94.92894 * 19 18 17 30 30 H 1.09005 * 110.41066 * 217.36727 * 19 18 17 31 31 H 1.00897 * 111.00413 * 82.13482 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0849 -1.3786 5 6 3.4730 -1.3019 -1.9115 6 1 4.0701 -1.3506 -2.8100 7 6 3.0478 -2.4726 -1.2956 8 7 2.0215 -2.4481 -0.4751 9 14 3.9351 -4.0813 -1.6337 10 1 5.1077 -4.1992 -0.7303 11 1 3.0091 -5.2172 -1.3937 12 1 4.3935 -4.1064 -3.0459 13 6 3.2508 1.0326 -2.1229 14 8 3.6547 0.9616 -3.2644 15 6 2.8780 2.3702 -1.5373 16 1 1.9553 2.2889 -0.9629 17 6 4.0206 2.9058 -0.6480 18 6 4.0400 4.4285 -0.8942 19 6 2.9079 4.6847 -1.9121 20 7 2.7319 3.3861 -2.6114 21 1 -1.0500 0.0002 0.0001 22 1 3.0097 -0.8554 0.5681 23 1 3.0089 0.9211 0.4574 24 1 1.7249 -3.2653 -0.0449 25 1 4.9710 2.4621 -0.9447 26 1 3.8162 2.6946 0.4016 27 1 5.0000 4.7323 -1.3118 28 1 3.8443 4.9661 0.0336 29 1 1.9896 4.9657 -1.3965 30 1 3.2008 5.4610 -2.6190 31 1 1.8216 3.3280 -3.0427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300911686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = 41.321844 kcal Electronic energy + Delta-G solvation = -15419.114848 eV Core-core repulsion = 12895.846015 eV Total energy + Delta-G solvation = -2523.268832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20476 -37.00954 -34.99770 -32.11677 -31.19946 -29.96494 -28.92419 -26.37217 -24.68571 -21.89397 -20.63752 -18.77402 -17.86180 -16.75476 -16.45173 -16.02495 -14.98806 -14.35240 -13.91223 -13.72536 -13.14996 -12.63445 -12.51283 -12.22351 -12.02311 -11.77469 -11.52198 -11.13240 -11.05032 -10.85103 -10.48403 -10.37272 -10.27471 -9.37221 -9.26282 -8.86127 -8.49167 -7.97955 -7.81558 -6.29105 -3.81046 3.18291 3.27620 3.31981 3.66455 3.92267 4.04506 4.17798 4.47594 4.91267 4.98563 5.10660 5.23476 5.29226 5.45733 5.56337 5.74957 5.84166 5.91165 6.01630 6.10711 6.25628 6.34950 6.44575 6.78948 7.01632 7.03946 7.60011 7.62167 8.11822 8.49331 8.78961 9.19935 9.41230 9.99608 10.71981 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.035995 B = 0.009319 C = 0.008249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.709649 B = 3003.752012 C = 3393.481437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.111 4.111 3 C 0.229 3.771 4 N -0.446 5.446 5 C -0.311 4.311 6 H 0.104 0.896 7 C 0.029 3.971 8 N -0.868 5.868 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.463 3.537 14 O -0.561 6.561 15 C 0.054 3.946 16 H 0.061 0.939 17 C -0.114 4.114 18 C -0.122 4.122 19 C 0.035 3.965 20 N -0.639 5.639 21 H 0.199 0.801 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.267 0.733 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 8.861 4.850 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.113 4.113 3 C 0.106 3.894 4 N -0.166 5.166 5 C -0.438 4.438 6 H 0.122 0.878 7 C -0.175 4.175 8 N -0.506 5.506 9 Si 0.749 3.251 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.250 3.750 14 O -0.442 6.442 15 C -0.059 4.059 16 H 0.078 0.922 17 C -0.152 4.152 18 C -0.160 4.160 19 C -0.094 4.094 20 N -0.268 5.268 21 H 0.216 0.784 22 H 0.130 0.870 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.741 8.598 4.058 9.536 hybrid contribution -1.024 -0.923 0.534 1.478 sum -0.282 7.675 4.592 8.948 Atomic orbital electron populations 1.24283 0.95391 1.06612 1.02209 1.23298 0.94463 0.95214 0.98283 1.18363 0.84111 1.01080 0.85848 1.43692 1.56765 1.06147 1.09963 1.19672 1.30882 0.81123 1.12134 0.87824 1.25261 0.95341 0.99394 0.97486 1.70080 1.21231 1.28822 1.30494 0.86008 0.79075 0.80920 0.79123 1.20332 1.21179 1.19505 1.19757 0.84315 0.84575 0.86316 1.90526 1.49498 1.86220 1.17991 1.22407 0.98309 0.92948 0.92232 0.92158 1.22267 0.99155 0.95156 0.98654 1.22277 0.99262 0.96033 0.98390 1.22909 0.97298 0.93165 0.96048 1.63322 1.36351 1.00856 1.26258 0.78414 0.86967 0.92164 0.92230 0.90542 0.91022 0.91094 0.91563 0.94653 0.90338 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.54 19.25 29.55 0.57 -4.97 16 2 C -0.11 -2.50 10.64 -37.12 -0.39 -2.90 16 3 C 0.23 5.11 4.81 -6.83 -0.03 5.07 16 4 N -0.45 -11.39 2.60 -117.94 -0.31 -11.69 16 5 C -0.31 -8.66 9.35 -14.93 -0.14 -8.80 16 6 H 0.10 3.06 7.36 -52.49 -0.39 2.67 16 7 C 0.03 0.75 4.91 -17.47 -0.09 0.66 16 8 N -0.87 -22.89 9.38 55.50 0.52 -22.37 16 9 Si 0.92 20.71 29.60 -169.99 -5.03 15.68 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 13 C 0.46 11.56 6.76 -10.99 -0.07 11.48 16 14 O -0.56 -16.18 16.21 5.54 0.09 -16.09 16 15 C 0.05 1.06 2.62 -67.22 -0.18 0.88 16 16 H 0.06 1.15 6.68 -51.93 -0.35 0.80 16 17 C -0.11 -1.83 5.90 -25.35 -0.15 -1.98 16 18 C -0.12 -1.60 7.00 -25.35 -0.18 -1.78 16 19 C 0.04 0.48 7.47 -2.20 -0.02 0.47 16 20 N -0.64 -11.54 6.87 -103.97 -0.71 -12.25 16 21 H 0.20 3.35 7.80 -54.09 -0.42 2.93 16 22 H 0.11 2.64 6.34 -51.93 -0.33 2.31 16 23 H 0.06 1.12 5.36 -51.93 -0.28 0.85 16 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.08 1.35 7.85 -51.93 -0.41 0.94 16 26 H 0.07 1.01 7.00 -51.93 -0.36 0.64 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.34 5.77 8.92 -39.29 -0.35 5.42 16 LS Contribution 262.86 15.07 3.96 3.96 Total: -1.00 -31.88 262.86 -5.87 -37.74 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.71 Total: 6.88 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.68 Total: -1.85 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.50 Total: -46.32 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.09 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.88 -5.87 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300911686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.066 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds