Wall clock time and date at job start Mon Mar 30 2020 02:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47064 * 86.43799 * 3 2 1 5 5 C 1.37102 * 119.99729 * 264.38042 * 4 3 2 6 6 H 1.07997 * 119.99728 * 196.29470 * 5 4 3 7 7 C 1.38946 * 119.99964 * 16.30129 * 5 4 3 8 8 N 1.31419 * 120.00147 * 20.58932 * 7 5 4 9 9 Si 1.86800 * 120.00107 * 200.58794 * 7 5 4 10 10 H 1.48501 * 109.46985 * 84.95934 * 9 7 5 11 11 H 1.48500 * 109.47063 * 204.95817 * 9 7 5 12 12 H 1.48494 * 109.47161 * 324.95632 * 9 7 5 13 13 C 1.34776 * 120.00168 * 84.38230 * 4 3 2 14 14 O 1.21294 * 119.99827 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00167 * 359.97438 * 13 4 3 16 16 H 1.08994 * 110.36316 * 317.64825 * 15 13 4 17 17 C 1.54376 * 110.40960 * 80.00188 * 15 13 4 18 18 C 1.54263 * 105.05932 * 142.75055 * 17 15 13 19 19 C 1.54377 * 105.05974 * 359.97438 * 18 17 15 20 20 N 1.48560 * 110.50976 * 195.23532 * 15 13 4 21 21 H 4.40638 * 5.51285 * 180.02562 * 4 1 2 22 22 H 1.08993 * 109.47523 * 326.43613 * 3 2 1 23 23 H 1.09007 * 109.47204 * 206.42901 * 3 2 1 24 24 H 0.96999 * 120.00212 * 180.02562 * 8 7 5 25 25 H 1.09005 * 110.32385 * 23.85167 * 17 15 13 26 26 H 1.08997 * 110.41097 * 261.68895 * 17 15 13 27 27 H 1.09004 * 110.32398 * 241.10264 * 18 17 15 28 28 H 1.08999 * 110.40627 * 118.94121 * 18 17 15 29 29 H 1.08998 * 110.41038 * 94.92894 * 19 18 17 30 30 H 1.09005 * 110.41066 * 217.36727 * 19 18 17 31 31 H 1.00897 * 111.00413 * 82.13482 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0849 -1.3786 5 6 3.4730 -1.3019 -1.9115 6 1 4.0701 -1.3506 -2.8100 7 6 3.0478 -2.4726 -1.2956 8 7 2.0215 -2.4481 -0.4751 9 14 3.9351 -4.0813 -1.6337 10 1 5.1077 -4.1992 -0.7303 11 1 3.0091 -5.2172 -1.3937 12 1 4.3935 -4.1064 -3.0459 13 6 3.2508 1.0326 -2.1229 14 8 3.6547 0.9616 -3.2644 15 6 2.8780 2.3702 -1.5373 16 1 1.9553 2.2889 -0.9629 17 6 4.0206 2.9058 -0.6480 18 6 4.0400 4.4285 -0.8942 19 6 2.9079 4.6847 -1.9121 20 7 2.7319 3.3861 -2.6114 21 1 -1.0500 0.0002 0.0001 22 1 3.0097 -0.8554 0.5681 23 1 3.0089 0.9211 0.4574 24 1 1.7249 -3.2653 -0.0449 25 1 4.9710 2.4621 -0.9447 26 1 3.8162 2.6946 0.4016 27 1 5.0000 4.7323 -1.3118 28 1 3.8443 4.9661 0.0336 29 1 1.9896 4.9657 -1.3965 30 1 3.2008 5.4610 -2.6190 31 1 1.8216 3.3280 -3.0427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300911686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:17 Heat of formation + Delta-G solvation = 18.477869 kcal Electronic energy + Delta-G solvation = -15420.105437 eV Core-core repulsion = 12895.846015 eV Total energy + Delta-G solvation = -2524.259422 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.90458 -38.51332 -36.95738 -34.02872 -33.03434 -31.22168 -30.35470 -28.17183 -26.56538 -23.43855 -21.78080 -20.49323 -19.69089 -18.52569 -18.03437 -17.57006 -16.75981 -16.04028 -15.70627 -15.36085 -14.61209 -14.22504 -14.09014 -13.95964 -13.51574 -13.40783 -13.02562 -12.78936 -12.53777 -12.39880 -12.16892 -12.10757 -11.55350 -11.17712 -11.10335 -10.62871 -10.28356 -9.81541 -9.44474 -8.30996 -5.91328 1.37096 1.42007 1.52668 1.88232 2.13241 2.31627 2.36657 2.96886 3.03839 3.55745 3.75007 3.83651 3.85631 4.07643 4.26690 4.31309 4.54693 4.68455 4.78058 4.91988 4.98978 5.01444 5.13817 5.24085 5.40845 5.47276 5.73846 6.09957 6.33185 6.49813 7.11192 7.17717 7.44526 8.04377 8.67310 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.035995 B = 0.009319 C = 0.008249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.709649 B = 3003.752012 C = 3393.481437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.155 4.155 3 C 0.233 3.767 4 N -0.455 5.455 5 C -0.351 4.351 6 H 0.071 0.929 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.984 3.016 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.449 3.551 14 O -0.616 6.616 15 C 0.064 3.936 16 H 0.068 0.932 17 C -0.114 4.114 18 C -0.115 4.115 19 C 0.036 3.964 20 N -0.666 5.666 21 H 0.234 0.766 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.272 0.728 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 9.752 6.476 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.174 5.174 5 C -0.479 4.479 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.511 5.511 9 Si 0.808 3.192 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.239 3.761 14 O -0.501 6.501 15 C -0.050 4.050 16 H 0.086 0.914 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.093 4.093 20 N -0.295 5.295 21 H 0.250 0.750 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.001 9.507 5.733 11.102 hybrid contribution -0.865 -1.208 0.015 1.486 sum -0.866 8.300 5.748 10.133 Atomic orbital electron populations 1.25169 0.96363 1.04793 1.00220 1.23535 0.95080 0.96930 1.00075 1.18388 0.84552 1.02013 0.83977 1.43889 1.56510 1.05743 1.11263 1.19544 1.32622 0.83183 1.12533 0.91059 1.25937 0.95517 1.01734 0.96895 1.70170 1.21125 1.29736 1.30089 0.85096 0.78431 0.77171 0.78488 1.18895 1.20082 1.20574 1.20811 0.83049 0.86438 0.85821 1.90471 1.51881 1.87353 1.20404 1.22260 0.99610 0.90293 0.92791 0.91444 1.22311 0.96575 0.97271 0.99107 1.22317 0.99322 0.93705 0.99904 1.23059 0.98572 0.91195 0.96455 1.63286 1.36709 1.02603 1.26939 0.74957 0.88705 0.88755 0.91813 0.92910 0.88633 0.90839 0.88057 0.92385 0.88897 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.74 19.25 74.32 1.43 -8.31 16 2 C -0.15 -6.81 10.64 31.12 0.33 -6.48 16 3 C 0.23 10.36 4.81 84.57 0.41 10.76 16 4 N -0.46 -23.87 2.60 -645.42 -1.68 -25.55 16 5 C -0.35 -20.32 9.35 84.04 0.79 -19.53 16 6 H 0.07 4.48 7.36 -2.91 -0.02 4.46 16 7 C 0.00 0.12 4.91 84.92 0.42 0.53 16 8 N -0.87 -45.84 9.38 21.66 0.20 -45.63 16 9 Si 0.98 42.76 29.60 68.60 2.03 44.79 16 10 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.45 23.11 6.76 87.66 0.59 23.71 16 14 O -0.62 -37.31 16.21 -3.07 -0.05 -37.36 16 15 C 0.06 2.44 2.62 44.32 0.12 2.56 16 16 H 0.07 2.47 6.68 -2.39 -0.02 2.45 16 17 C -0.11 -3.49 5.90 31.49 0.19 -3.30 16 18 C -0.11 -2.64 7.00 31.49 0.22 -2.42 16 19 C 0.04 0.87 7.47 86.45 0.65 1.52 16 20 N -0.67 -23.54 6.87 -482.85 -3.32 -26.85 16 21 H 0.23 7.06 7.80 -4.42 -0.03 7.03 16 22 H 0.10 4.49 6.34 -2.39 -0.02 4.47 16 23 H 0.09 3.42 5.36 -2.38 -0.01 3.40 16 24 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 25 H 0.05 1.85 7.85 -2.38 -0.02 1.83 16 26 H 0.10 2.41 7.00 -2.39 -0.02 2.40 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.34 11.44 8.92 -89.70 -0.80 10.64 16 Total: -1.00 -71.19 262.86 2.66 -68.53 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.34 Total: 23.06 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.13 Total: -0.98 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -4.79 Total: -98.04 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.05 Total: -37.36 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -71.19 2.66 -68.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300911686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.009 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds