Wall clock time and date at job start Mon Mar 30 2020 03:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00051 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99801 * 3 2 1 7 7 C 1.40247 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.40127 * 119.99802 * 0.27923 * 7 2 1 10 10 N 1.33024 * 126.65430 * 359.40915 * 9 7 2 11 11 N 1.28573 * 109.35094 * 179.82494 * 10 9 7 12 12 C 1.31308 * 110.20556 * 0.44852 * 11 10 9 13 13 C 1.50700 * 126.07987 * 179.74495 * 12 11 10 14 14 N 1.46903 * 109.47157 * 274.98108 * 13 12 11 15 15 C 1.48536 * 110.99924 * 52.59897 * 14 13 12 16 16 C 1.54943 * 103.22640 * 159.72228 * 15 14 13 17 17 C 1.54598 * 102.91975 * 322.58750 * 16 15 14 18 18 C 1.47897 * 111.00362 * 169.99613 * 14 13 12 19 19 N 1.35295 * 107.84719 * 359.72872 * 12 11 10 20 20 H 0.96997 * 127.05349 * 180.02562 * 19 12 11 21 21 H 0.96996 * 120.00337 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47106 * 34.97641 * 13 12 11 23 23 H 1.08996 * 109.47695 * 154.98158 * 13 12 11 24 24 H 1.08998 * 110.66870 * 278.15541 * 15 14 13 25 25 H 1.08995 * 110.66862 * 41.29292 * 15 14 13 26 26 H 1.08997 * 110.72318 * 204.22661 * 16 15 14 27 27 H 1.08999 * 110.72230 * 80.94025 * 16 15 14 28 28 H 1.08996 * 110.30880 * 263.03552 * 17 16 15 29 29 H 1.09002 * 110.30749 * 140.87464 * 17 16 15 30 30 H 1.08996 * 109.91645 * 333.51221 * 18 14 13 31 31 H 1.09001 * 109.91827 * 94.60293 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4402 0.7001 7 6 2.0081 -1.2146 0.0005 8 1 3.0881 -1.2145 0.0001 9 6 1.3075 -2.4281 -0.0048 10 7 -0.0138 -2.5823 0.0003 11 7 -0.2964 -3.8365 -0.0110 12 6 0.8060 -4.5498 -0.0142 13 6 0.8895 -6.0545 -0.0213 14 7 0.7964 -6.5566 1.3561 15 6 -0.4015 -6.0086 2.0425 16 6 -0.6276 -7.0032 3.2089 17 6 -0.2677 -8.3666 2.5753 18 6 0.6346 -8.0265 1.3746 19 7 1.8537 -3.6938 -0.0104 20 1 2.7961 -3.9235 -0.0118 21 1 -0.4850 0.8400 -0.0004 22 1 0.0690 -6.4611 -0.6125 23 1 1.8395 -6.3637 -0.4572 24 1 -0.2019 -5.0073 2.4240 25 1 -1.2601 -6.0017 1.3711 26 1 -1.6690 -6.9901 3.5305 27 1 0.0375 -6.7777 4.0424 28 1 -1.1699 -8.8770 2.2380 29 1 0.2728 -8.9857 3.2914 30 1 0.1636 -8.3599 0.4500 31 1 1.6068 -8.5057 1.4896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306179467.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:36 Heat of formation + Delta-G solvation = 65.916126 kcal Electronic energy + Delta-G solvation = -14952.425439 eV Core-core repulsion = 12462.515845 eV Total energy + Delta-G solvation = -2489.909593 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.118 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70931 -38.39254 -33.64633 -32.49717 -31.60561 -29.14771 -28.47715 -26.28413 -24.32429 -21.12087 -20.63268 -20.47616 -19.70076 -17.28257 -15.99168 -15.76522 -15.55453 -14.78095 -13.94472 -13.65436 -13.50438 -12.96423 -12.93328 -12.13513 -11.67000 -11.34851 -11.23866 -11.20407 -11.09936 -10.92099 -10.77600 -10.39132 -10.32998 -9.56339 -9.40167 -8.92684 -8.28290 -8.13956 -7.51504 -6.55391 -4.51572 2.99174 3.11334 3.14704 3.47895 3.94646 4.31788 4.52936 4.68848 4.90549 4.93996 5.12379 5.45301 5.56053 5.58536 5.64862 5.79190 5.87797 5.93835 6.02684 6.06335 6.22087 6.42271 6.53781 6.99210 7.14819 7.26063 7.32579 7.37805 7.60963 8.27124 8.30694 8.82710 9.11670 10.37986 10.83544 Molecular weight = 222.12amu Principal moments of inertia in cm(-1) A = 0.061932 B = 0.006210 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.000041 B = 4508.074371 C = 4621.227994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.080 3.920 3 Si 0.918 3.082 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.336 3.664 10 N -0.339 5.339 11 N -0.295 5.295 12 C 0.064 3.936 13 C 0.155 3.845 14 N -0.518 5.518 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.129 4.129 18 C 0.034 3.966 19 N -0.628 5.628 20 H 0.402 0.598 21 H 0.277 0.723 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -10.303 2.795 11.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.145 4.145 3 Si 0.742 3.258 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.497 4.497 8 H 0.099 0.901 9 C 0.091 3.909 10 N -0.186 5.186 11 N -0.140 5.140 12 C -0.201 4.201 13 C 0.026 3.974 14 N -0.243 5.243 15 C -0.078 4.078 16 C -0.165 4.165 17 C -0.167 4.167 18 C -0.094 4.094 19 N -0.247 5.247 20 H 0.238 0.762 21 H 0.088 0.912 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.235 -9.688 3.042 10.229 hybrid contribution 1.654 0.120 -0.498 1.732 sum 2.889 -9.568 2.544 10.313 Atomic orbital electron populations 1.69954 1.07031 1.28416 1.31106 1.25761 0.94849 1.00554 0.93319 0.86169 0.80036 0.80514 0.79052 1.19512 1.20098 1.18760 1.18145 0.93714 0.87328 1.50534 0.90059 1.21583 0.90116 0.84044 0.95207 1.75599 1.09146 1.04551 1.29310 1.74005 1.23864 1.00687 1.15406 1.23260 0.85938 0.93016 1.17931 1.20106 1.00825 0.87349 0.89158 1.64907 1.39480 1.04262 1.15664 1.23092 0.91510 0.98692 0.94526 1.22523 1.01045 0.94488 0.98425 1.22373 0.99145 0.97812 0.97344 1.22851 0.99448 0.89627 0.97452 1.43793 1.08422 1.07211 1.65261 0.76218 0.91160 0.93078 0.90783 0.90029 0.92814 0.91339 0.91214 0.91773 0.91452 0.93973 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.73 11.95 55.56 0.66 -20.06 16 2 C 0.08 2.08 5.50 -17.29 -0.10 1.99 16 3 Si 0.92 18.90 29.56 -169.99 -5.03 13.88 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.30 9.46 -38.12 -0.36 -12.66 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 C 0.34 9.41 7.73 -155.21 -1.20 8.21 16 10 N -0.34 -10.21 10.53 31.22 0.33 -9.88 16 11 N -0.30 -8.04 11.60 32.88 0.38 -7.66 16 12 C 0.06 1.50 6.73 -154.51 -1.04 0.46 16 13 C 0.16 2.80 5.66 -4.97 -0.03 2.77 16 14 N -0.52 -8.72 5.39 -231.90 -1.25 -9.97 16 15 C 0.05 0.87 5.18 -1.89 -0.01 0.86 16 16 C -0.13 -1.73 7.06 -24.87 -0.18 -1.90 16 17 C -0.13 -1.50 6.93 -25.38 -0.18 -1.67 16 18 C 0.03 0.45 6.69 -2.76 -0.02 0.43 16 19 N -0.63 -14.83 6.29 -9.38 -0.06 -14.89 16 20 H 0.40 7.99 8.96 -40.82 -0.37 7.63 16 21 H 0.28 7.01 8.29 -40.82 -0.34 6.68 16 22 H 0.05 0.90 7.81 -51.93 -0.41 0.49 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.08 1.73 7.83 -51.93 -0.41 1.32 16 25 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.52 7.57 -51.93 -0.39 0.13 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 262.77 15.07 3.96 3.96 Total: -1.00 -32.01 262.77 -8.17 -40.18 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.07 Total: 5.96 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.10 Total: -1.51 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.07 Total: -62.46 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.01 -8.17 -40.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306179467.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.096 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds