Wall clock time and date at job start Mon Mar 30 2020 03:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35047 * 126.39693 * 2 1 4 4 N 1.30500 * 108.69593 * 180.26754 * 3 2 1 5 5 C 1.34122 * 109.26222 * 359.76182 * 4 3 2 6 6 C 1.34669 * 108.02127 * 0.02562 * 5 4 3 7 7 C 1.50691 * 126.59527 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.99576 * 324.65605 * 7 6 5 9 9 C 1.54098 * 109.87910 * 85.73891 * 7 6 5 10 10 C 1.54817 * 104.18940 * 121.45284 * 9 7 6 11 11 C 1.54992 * 102.09126 * 20.88210 * 10 9 7 12 12 H 1.09001 * 110.75006 * 81.54167 * 11 10 9 13 13 C 1.50694 * 110.61737 * 204.47446 * 11 10 9 14 14 H 1.08000 * 120.00563 * 355.52405 * 13 11 10 15 15 C 1.37885 * 119.99902 * 175.52569 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 O 1.43753 * 109.88117 * 203.56874 * 7 6 5 22 22 H 1.08994 * 109.46934 * 270.12073 * 1 2 3 23 23 H 1.09000 * 109.46973 * 30.12711 * 1 2 3 24 24 H 1.09001 * 109.46497 * 150.12230 * 1 2 3 25 25 H 1.07995 * 125.65083 * 359.97438 * 3 2 1 26 26 H 1.08004 * 125.99344 * 179.97438 * 5 4 3 27 27 H 1.08996 * 110.49148 * 240.13136 * 9 7 6 28 28 H 1.09002 * 110.48877 * 2.78170 * 9 7 6 29 29 H 1.08997 * 110.90945 * 262.67991 * 10 9 7 30 30 H 1.09005 * 110.90554 * 139.08086 * 10 9 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6902 -0.0058 5 6 3.5461 -0.6505 -0.0044 6 6 2.2773 -1.1018 0.0020 7 6 1.8364 -2.5428 0.0051 8 1 2.5235 -3.1441 -0.5902 9 6 1.7929 -3.0743 1.4509 10 6 0.3260 -3.5302 1.6437 11 6 -0.1496 -3.7209 0.1809 12 1 0.1697 -4.6887 -0.2060 13 6 -1.6472 -3.5818 0.0874 14 1 -2.2342 -3.4486 0.9841 15 6 -2.2680 -3.6245 -1.1430 16 7 -1.5531 -3.7862 -2.2350 17 14 -4.1245 -3.4528 -1.2588 18 1 -4.5410 -3.5311 -2.6821 19 1 -4.7717 -4.5476 -0.4922 20 1 -4.5365 -2.1425 -0.6944 21 8 0.5060 -2.6482 -0.5290 22 1 -0.3633 0.0022 1.0276 23 1 -0.3633 0.8888 -0.5158 24 1 -0.3632 -0.8911 -0.5120 25 1 1.9335 2.1144 -0.0004 26 1 4.4369 -1.2612 -0.0085 27 1 2.4731 -3.9179 1.5680 28 1 2.0418 -2.2816 2.1565 29 1 -0.2584 -2.7589 2.1453 30 1 0.2799 -4.4704 2.1934 31 1 -1.9900 -3.8166 -3.1006 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306400465.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:16 Heat of formation + Delta-G solvation = 13.527454 kcal Electronic energy + Delta-G solvation = -15576.961567 eV Core-core repulsion = 13052.487479 eV Total energy + Delta-G solvation = -2524.474088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.60668 -38.10826 -33.35407 -32.83378 -31.14884 -30.38165 -27.42795 -26.33384 -24.55800 -21.65074 -21.06890 -20.23278 -19.28268 -16.83835 -16.35363 -15.58930 -14.85677 -14.70282 -14.42381 -13.86710 -13.26759 -13.06141 -12.77654 -12.41798 -12.25863 -11.93864 -11.76886 -11.07451 -10.94675 -10.68869 -10.48606 -10.24720 -9.85889 -9.59181 -9.21512 -9.02201 -8.75082 -8.24871 -7.81128 -6.15186 -4.29450 2.53232 3.21778 3.28305 3.29355 3.39143 3.56366 4.29468 4.83535 5.07080 5.19567 5.36602 5.46106 5.48414 5.60981 5.71194 5.83014 6.03099 6.10223 6.21534 6.29708 6.51283 6.65307 6.69005 6.79497 6.94361 7.18297 7.37472 7.70342 7.74857 8.08121 8.36200 8.49403 8.81831 9.41678 10.91653 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037033 B = 0.009227 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.893297 B = 3033.757465 C = 3391.834702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.435 5.435 3 C 0.157 3.843 4 N -0.501 5.501 5 C -0.046 4.046 6 C 0.006 3.994 7 C 0.138 3.862 8 H 0.073 0.927 9 C -0.145 4.145 10 C -0.146 4.146 11 C 0.209 3.791 12 H 0.030 0.970 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.078 3.922 16 N -0.860 5.860 17 Si 0.891 3.109 18 H -0.286 1.286 19 H -0.275 1.275 20 H -0.275 1.275 21 O -0.350 6.350 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.136 0.864 25 H 0.198 0.802 26 H 0.164 0.836 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 4.135 4.734 7.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.116 5.116 3 C -0.125 4.125 4 N -0.219 5.219 5 C -0.194 4.194 6 C -0.111 4.111 7 C 0.077 3.923 8 H 0.090 0.910 9 C -0.183 4.183 10 C -0.184 4.184 11 C 0.154 3.846 12 H 0.048 0.952 13 C -0.572 4.572 14 H 0.083 0.917 15 C -0.128 4.128 16 N -0.495 5.495 17 Si 0.718 3.282 18 H -0.211 1.211 19 H -0.200 1.200 20 H -0.200 1.200 21 O -0.269 6.269 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.154 0.846 25 H 0.214 0.786 26 H 0.181 0.819 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.897 4.775 4.353 7.546 hybrid contribution -1.599 -0.396 0.035 1.648 sum 2.298 4.380 4.388 6.612 Atomic orbital electron populations 1.22525 0.75451 1.06876 1.03591 1.45230 1.08331 1.05981 1.52034 1.24754 0.85971 0.93530 1.08250 1.70169 1.19640 1.11895 1.20243 1.21853 0.95442 0.91102 1.11051 1.21544 0.90856 0.89971 1.08759 1.20959 0.89984 0.87372 0.93952 0.90983 1.22958 0.98648 1.00263 0.96478 1.23212 0.93658 1.00350 1.01219 1.20708 0.92694 0.87213 0.83985 0.95244 1.20937 0.89808 1.53308 0.93099 0.91709 1.25087 0.98192 0.93732 0.95834 1.70026 1.35463 1.46084 0.97951 0.86695 0.85452 0.78887 0.77186 1.21128 1.20006 1.20045 1.89166 1.20502 1.55901 1.61340 0.91460 0.91097 0.84581 0.78564 0.81912 0.91439 0.91915 0.91917 0.91973 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.98 10.81 59.85 0.65 1.63 16 2 N -0.44 -7.89 3.15 -121.37 -0.38 -8.27 16 3 C 0.16 2.61 12.56 -90.37 -1.14 1.48 16 4 N -0.50 -9.30 11.25 -14.67 -0.16 -9.46 16 5 C -0.05 -0.84 11.79 -17.81 -0.21 -1.05 16 6 C 0.01 0.12 5.85 -81.60 -0.48 -0.36 16 7 C 0.14 2.71 3.89 -27.31 -0.11 2.61 16 8 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 9 C -0.15 -2.53 6.63 -25.20 -0.17 -2.70 16 10 C -0.15 -2.86 6.55 -24.72 -0.16 -3.02 16 11 C 0.21 4.99 3.16 -26.83 -0.08 4.91 16 12 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.53 -13.85 8.83 -34.44 -0.30 -14.16 16 14 H 0.06 1.63 7.78 -52.49 -0.41 1.22 16 15 C 0.08 2.07 5.42 -17.82 -0.10 1.97 16 16 N -0.86 -24.11 12.94 55.43 0.72 -23.39 16 17 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 O -0.35 -8.30 7.31 -35.23 -0.26 -8.56 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.14 2.90 5.36 -51.93 -0.28 2.63 16 25 H 0.20 2.45 8.06 -52.49 -0.42 2.02 16 26 H 0.16 2.53 8.06 -52.48 -0.42 2.11 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 29 H 0.06 1.23 8.05 -51.93 -0.42 0.81 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -29.54 263.16 -7.26 -36.80 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.02 Total: 2.51 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.10 Total: -8.70 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.17 Total: -41.12 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.26 Total: -8.56 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.54 -7.26 -36.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306400465.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.324 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds