Wall clock time and date at job start Mon Mar 30 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40093 * 126.03750 * 2 1 4 4 C 1.30832 * 108.20371 * 180.22709 * 3 2 1 5 5 C 1.39874 * 108.20427 * 359.78265 * 4 3 2 6 6 C 1.34948 * 126.03948 * 179.84197 * 2 1 3 7 7 C 1.50702 * 126.12556 * 0.03539 * 6 2 1 8 8 H 1.08996 * 110.35196 * 26.86190 * 7 6 2 9 9 C 1.54944 * 110.31104 * 264.71624 * 7 6 2 10 10 C 1.55304 * 100.97800 * 204.65934 * 9 7 6 11 11 C 1.54384 * 102.25492 * 34.11596 * 10 9 7 12 12 H 1.09001 * 109.83398 * 98.15407 * 11 10 9 13 13 C 1.50701 * 109.82859 * 219.03816 * 11 10 9 14 14 H 1.07998 * 120.00184 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99576 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99439 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00217 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46941 * 89.99902 * 17 15 13 19 19 H 1.48499 * 109.47175 * 209.99644 * 17 15 13 20 20 H 1.48503 * 109.47230 * 329.99992 * 17 15 13 21 21 O 1.43240 * 107.58460 * 338.63785 * 11 10 9 22 22 H 1.08995 * 109.47594 * 270.15431 * 1 2 3 23 23 H 1.09001 * 109.46768 * 30.15998 * 1 2 3 24 24 H 1.09004 * 109.46598 * 150.15501 * 1 2 3 25 25 H 1.08003 * 125.89460 * 179.74121 * 4 3 2 26 26 H 1.08001 * 126.03678 * 179.97438 * 5 4 3 27 27 H 1.09002 * 111.12633 * 86.72064 * 9 7 6 28 28 H 1.08995 * 111.12590 * 322.60066 * 9 7 6 29 29 H 1.09006 * 110.84773 * 152.30089 * 10 9 7 30 30 H 1.08993 * 110.84888 * 275.71592 * 10 9 7 31 31 H 0.97000 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7322 -0.0049 5 6 3.5437 -0.6666 -0.0032 6 6 2.2589 -1.0912 0.0030 7 6 1.7974 -2.5258 0.0062 8 1 0.8137 -2.6085 -0.4558 9 6 1.7593 -3.0753 1.4544 10 6 1.9151 -4.5989 1.1969 11 6 2.8446 -4.6295 -0.0354 12 1 3.8731 -4.8028 0.2813 13 6 2.4090 -5.7223 -0.9773 14 1 1.5570 -6.3390 -0.7318 15 6 3.0981 -5.9347 -2.1525 16 7 2.7182 -6.8887 -2.9742 17 14 4.5712 -4.8677 -2.5774 18 1 5.8054 -5.4878 -2.0320 19 1 4.6874 -4.7492 -4.0531 20 1 4.3920 -3.5178 -1.9850 21 8 2.7440 -3.3569 -0.6851 22 1 -0.3634 0.0028 1.0276 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5115 25 1 4.4054 1.3711 -0.0102 26 1 4.4211 -1.2963 -0.0066 27 1 0.8059 -2.8534 1.9339 28 1 2.5915 -2.6893 2.0431 29 1 2.3846 -5.0904 2.0491 30 1 0.9512 -5.0547 0.9710 31 1 3.2027 -7.0380 -3.8011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306470406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:18 Heat of formation + Delta-G solvation = 37.008710 kcal Electronic energy + Delta-G solvation = -15345.395712 eV Core-core repulsion = 12821.939848 eV Total energy + Delta-G solvation = -2523.455864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98228 -38.33901 -33.18944 -32.63856 -31.31524 -30.81134 -28.07817 -26.55211 -24.68513 -21.87768 -20.85280 -20.26225 -19.28003 -17.06129 -16.63306 -15.62244 -15.24783 -14.89301 -14.16972 -13.97421 -13.34930 -13.01111 -12.70282 -12.55159 -12.44145 -12.24296 -12.07889 -11.15662 -11.05154 -10.79133 -10.52148 -10.26089 -10.07531 -9.84467 -9.40376 -9.01252 -8.56952 -8.36138 -8.09809 -6.11772 -4.20885 2.09676 2.69878 3.12820 3.39690 3.46204 3.72041 4.54067 4.57991 4.74238 5.01210 5.18815 5.21906 5.31468 5.34170 5.39661 5.55245 5.75459 5.83795 6.01953 6.12891 6.16217 6.30001 6.39226 6.60779 6.61998 6.94158 7.19764 7.23422 7.60483 7.93700 8.14747 8.42098 8.88892 9.53136 10.98670 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.009493 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.159885 B = 2948.842622 C = 3316.603516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 N -0.309 5.309 4 C 0.041 3.959 5 C -0.255 4.255 6 C 0.096 3.904 7 C 0.139 3.861 8 H 0.070 0.930 9 C -0.144 4.144 10 C -0.132 4.132 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.536 4.536 14 H 0.076 0.924 15 C 0.084 3.916 16 N -0.893 5.893 17 Si 0.868 3.132 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.220 1.220 21 O -0.364 6.364 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.180 0.820 26 H 0.147 0.853 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.040 11.471 7.708 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.158 5.158 3 N -0.131 5.131 4 C -0.144 4.144 5 C -0.284 4.284 6 C -0.031 4.031 7 C 0.078 3.922 8 H 0.087 0.913 9 C -0.183 4.183 10 C -0.170 4.170 11 C 0.113 3.887 12 H 0.059 0.941 13 C -0.573 4.573 14 H 0.094 0.906 15 C -0.120 4.120 16 N -0.530 5.530 17 Si 0.695 3.305 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.143 1.143 21 O -0.283 6.283 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.197 0.803 26 H 0.165 0.835 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.831 12.443 7.364 14.733 hybrid contribution 1.131 -0.374 -0.300 1.228 sum -1.701 12.069 7.064 14.087 Atomic orbital electron populations 1.21824 0.74837 1.04422 1.03057 1.48365 1.06273 1.03289 1.57899 1.77253 1.01899 1.07963 1.25977 1.23791 0.95072 0.95228 1.00322 1.21240 0.96911 0.94321 1.15943 1.21271 0.91509 0.90289 1.00027 1.21081 0.93982 0.84224 0.92876 0.91267 1.23232 1.01848 0.97333 0.95839 1.23027 1.01557 0.93521 0.98883 1.20770 0.95208 0.82154 0.90584 0.94111 1.21293 1.16596 1.14331 1.05038 0.90625 1.25044 0.97416 0.94004 0.95531 1.69932 1.40611 1.31193 1.11252 0.86983 0.81788 0.84196 0.77571 1.21046 1.21803 1.14317 1.88926 1.60238 1.26515 1.52653 0.91006 0.89550 0.89368 0.80312 0.83489 0.91250 0.90871 0.91470 0.90752 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 11.27 59.85 0.67 1.82 16 2 N -0.37 -6.02 4.01 -63.89 -0.26 -6.27 16 3 N -0.31 -5.17 12.58 30.63 0.39 -4.79 16 4 C 0.04 0.64 12.03 -17.37 -0.21 0.43 16 5 C -0.26 -4.47 10.34 -40.01 -0.41 -4.89 16 6 C 0.10 1.71 6.05 -82.26 -0.50 1.21 16 7 C 0.14 2.57 3.68 -26.86 -0.10 2.47 16 8 H 0.07 1.24 7.05 -51.93 -0.37 0.88 16 9 C -0.14 -2.31 6.56 -24.48 -0.16 -2.47 16 10 C -0.13 -2.45 6.52 -24.78 -0.16 -2.61 16 11 C 0.17 3.88 2.82 -27.16 -0.08 3.81 16 12 H 0.04 0.95 7.54 -51.93 -0.39 0.56 16 13 C -0.54 -14.88 9.33 -34.44 -0.32 -15.20 16 14 H 0.08 2.24 7.77 -52.49 -0.41 1.83 16 15 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 16 N -0.89 -27.29 13.96 55.43 0.77 -26.51 16 17 Si 0.87 21.90 27.01 -169.99 -4.59 17.31 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.22 -5.43 5.40 56.52 0.31 -5.13 16 21 O -0.36 -8.36 7.40 -35.23 -0.26 -8.62 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.09 0.93 7.03 -51.93 -0.37 0.56 16 25 H 0.18 2.09 8.06 -52.48 -0.42 1.67 16 26 H 0.15 2.57 8.06 -52.49 -0.42 2.15 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 1.40 7.67 -51.93 -0.40 1.00 16 31 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 260.75 15.07 3.93 3.93 Total: -1.00 -32.77 260.75 -5.50 -38.27 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.11 Total: -0.23 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.36 Total: -13.08 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.90 Total: -37.57 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -0.26 Total: -8.62 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.31 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.77 -5.50 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.279 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds