Wall clock time and date at job start Mon Mar 30 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40093 * 126.03750 * 2 1 4 4 C 1.30832 * 108.20371 * 180.22709 * 3 2 1 5 5 C 1.39874 * 108.20427 * 359.78265 * 4 3 2 6 6 C 1.34948 * 126.03948 * 179.84197 * 2 1 3 7 7 C 1.50702 * 126.12556 * 0.03539 * 6 2 1 8 8 H 1.08996 * 110.35196 * 26.86190 * 7 6 2 9 9 C 1.54944 * 110.31104 * 264.71624 * 7 6 2 10 10 C 1.55304 * 100.97800 * 204.65934 * 9 7 6 11 11 C 1.54384 * 102.25492 * 34.11596 * 10 9 7 12 12 H 1.09001 * 109.83398 * 98.15407 * 11 10 9 13 13 C 1.50701 * 109.82859 * 219.03816 * 11 10 9 14 14 H 1.07998 * 120.00184 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99576 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99439 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00217 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.46941 * 89.99902 * 17 15 13 19 19 H 1.48499 * 109.47175 * 209.99644 * 17 15 13 20 20 H 1.48503 * 109.47230 * 329.99992 * 17 15 13 21 21 O 1.43240 * 107.58460 * 338.63785 * 11 10 9 22 22 H 1.08995 * 109.47594 * 270.15431 * 1 2 3 23 23 H 1.09001 * 109.46768 * 30.15998 * 1 2 3 24 24 H 1.09004 * 109.46598 * 150.15501 * 1 2 3 25 25 H 1.08003 * 125.89460 * 179.74121 * 4 3 2 26 26 H 1.08001 * 126.03678 * 179.97438 * 5 4 3 27 27 H 1.09002 * 111.12633 * 86.72064 * 9 7 6 28 28 H 1.08995 * 111.12590 * 322.60066 * 9 7 6 29 29 H 1.09006 * 110.84773 * 152.30089 * 10 9 7 30 30 H 1.08993 * 110.84888 * 275.71592 * 10 9 7 31 31 H 0.97000 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5346 0.7322 -0.0049 5 6 3.5437 -0.6666 -0.0032 6 6 2.2589 -1.0912 0.0030 7 6 1.7974 -2.5258 0.0062 8 1 0.8137 -2.6085 -0.4558 9 6 1.7593 -3.0753 1.4544 10 6 1.9151 -4.5989 1.1969 11 6 2.8446 -4.6295 -0.0354 12 1 3.8731 -4.8028 0.2813 13 6 2.4090 -5.7223 -0.9773 14 1 1.5570 -6.3390 -0.7318 15 6 3.0981 -5.9347 -2.1525 16 7 2.7182 -6.8887 -2.9742 17 14 4.5712 -4.8677 -2.5774 18 1 5.8054 -5.4878 -2.0320 19 1 4.6874 -4.7492 -4.0531 20 1 4.3920 -3.5178 -1.9850 21 8 2.7440 -3.3569 -0.6851 22 1 -0.3634 0.0028 1.0276 23 1 -0.3633 0.8886 -0.5163 24 1 -0.3633 -0.8914 -0.5115 25 1 4.4054 1.3711 -0.0102 26 1 4.4211 -1.2963 -0.0066 27 1 0.8059 -2.8534 1.9339 28 1 2.5915 -2.6893 2.0431 29 1 2.3846 -5.0904 2.0491 30 1 0.9512 -5.0547 0.9710 31 1 3.2027 -7.0380 -3.8011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306470406.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:18 Heat of formation + Delta-G solvation = 14.726175 kcal Electronic energy + Delta-G solvation = -15346.361955 eV Core-core repulsion = 12821.939848 eV Total energy + Delta-G solvation = -2524.422107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.22271 -39.94135 -34.83207 -34.22234 -32.83526 -32.34942 -29.70806 -27.59103 -26.45441 -23.36974 -22.14423 -21.86475 -20.59787 -18.93762 -18.15771 -17.23385 -16.56277 -16.31471 -15.92050 -15.25097 -14.77732 -14.52199 -14.46646 -14.00710 -13.77104 -13.53174 -13.21206 -12.88139 -12.62693 -12.42519 -12.26699 -11.74979 -11.63390 -11.57892 -11.31154 -10.73690 -10.30827 -10.03147 -9.42873 -8.33617 -6.45521 0.84062 1.38278 1.40388 1.60088 1.71632 1.88860 2.44098 2.93227 3.36563 3.62279 3.69219 3.85810 4.09140 4.31711 4.39343 4.42081 4.43371 4.61761 4.64672 4.77968 4.87573 4.91545 5.02052 5.16312 5.27750 5.52162 5.57562 5.75581 6.03250 6.17039 6.46164 6.70337 6.75453 7.32586 8.80382 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.009493 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.159885 B = 2948.842622 C = 3316.603516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.375 5.375 3 N -0.324 5.324 4 C 0.045 3.955 5 C -0.275 4.275 6 C 0.083 3.917 7 C 0.132 3.868 8 H 0.072 0.928 9 C -0.126 4.126 10 C -0.128 4.128 11 C 0.166 3.834 12 H 0.042 0.958 13 C -0.538 4.538 14 H 0.042 0.958 15 C 0.027 3.973 16 N -0.941 5.941 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.297 1.297 20 H -0.211 1.211 21 O -0.387 6.387 22 H 0.095 0.905 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.213 0.787 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 13.535 9.140 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.159 5.159 3 N -0.147 5.147 4 C -0.140 4.140 5 C -0.304 4.304 6 C -0.045 4.045 7 C 0.072 3.928 8 H 0.090 0.910 9 C -0.164 4.164 10 C -0.166 4.166 11 C 0.110 3.890 12 H 0.059 0.941 13 C -0.576 4.576 14 H 0.061 0.939 15 C -0.172 4.172 16 N -0.581 5.581 17 Si 0.756 3.244 18 H -0.200 1.200 19 H -0.224 1.224 20 H -0.134 1.134 21 O -0.307 6.307 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.113 0.887 25 H 0.230 0.770 26 H 0.160 0.840 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.689 14.523 8.819 17.202 hybrid contribution 0.976 -1.001 -0.717 1.571 sum -1.714 13.522 8.101 15.856 Atomic orbital electron populations 1.22187 0.72562 1.05451 1.04938 1.48687 1.07628 1.02495 1.57060 1.77229 1.02501 1.08476 1.26451 1.24289 0.95796 0.94844 0.99038 1.21401 0.96831 0.95384 1.16795 1.21139 0.92124 0.90191 1.01046 1.21254 0.93018 0.84348 0.94146 0.91030 1.23170 1.04108 0.94648 0.94479 1.22951 1.00222 0.95882 0.97523 1.20645 0.96172 0.81048 0.91101 0.94056 1.21663 1.15055 1.15243 1.05608 0.93927 1.25895 1.00326 0.95227 0.95751 1.70062 1.42474 1.33434 1.12119 0.86007 0.78769 0.82897 0.76766 1.20011 1.22433 1.13408 1.88801 1.61452 1.26553 1.53894 0.88668 0.88216 0.88743 0.77030 0.84048 0.87890 0.89905 0.89289 0.91533 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.76 11.27 127.77 1.44 3.20 16 2 N -0.37 -11.05 4.01 -356.03 -1.43 -12.48 16 3 N -0.32 -10.00 12.58 -57.02 -0.72 -10.72 16 4 C 0.04 1.28 12.03 85.24 1.03 2.31 16 5 C -0.27 -9.05 10.34 21.99 0.23 -8.82 16 6 C 0.08 2.76 6.05 41.40 0.25 3.01 16 7 C 0.13 4.61 3.68 30.51 0.11 4.72 16 8 H 0.07 2.44 7.05 -2.39 -0.02 2.42 16 9 C -0.13 -3.62 6.56 32.05 0.21 -3.41 16 10 C -0.13 -4.48 6.52 31.86 0.21 -4.27 16 11 C 0.17 7.53 2.82 30.32 0.09 7.61 16 12 H 0.04 1.87 7.54 -2.39 -0.02 1.86 16 13 C -0.54 -30.38 9.33 25.60 0.24 -30.14 16 14 H 0.04 2.61 7.77 -2.91 -0.02 2.59 16 15 C 0.03 1.61 5.47 84.66 0.46 2.07 16 16 N -0.94 -59.17 13.96 21.45 0.30 -58.87 16 17 Si 0.93 45.82 27.01 68.60 1.85 47.67 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 20 H -0.21 -10.03 5.40 99.48 0.54 -9.49 16 21 O -0.39 -17.29 7.40 -148.98 -1.10 -18.40 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.09 1.75 7.03 -2.39 -0.02 1.73 16 25 H 0.21 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 29 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.07 2.42 7.67 -2.39 -0.02 2.40 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -71.16 260.75 4.11 -67.05 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.94 Total: 9.47 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 4.26 Total: -23.73 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.85 Total: -82.07 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.10 Total: -18.40 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.85 Total: 47.67 kcal Total: -71.16 4.11 -67.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306470406.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.778 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds