Wall clock time and date at job start Mon Mar 30 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36226 * 119.60342 * 2 1 4 4 N 1.37566 * 119.78284 * 0.02562 * 3 2 1 5 5 C 1.46492 * 119.99969 * 184.94878 * 4 3 2 6 6 C 1.52998 * 109.47232 * 175.29658 * 5 4 3 7 7 C 1.50696 * 109.47466 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00498 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99362 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00392 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46912 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46865 * 119.99838 * 11 9 7 14 14 H 1.48497 * 109.47245 * 239.99887 * 11 9 7 15 15 C 1.37861 * 120.43761 * 179.74534 * 3 2 1 16 16 C 1.39379 * 119.67293 * 0.25619 * 15 3 2 17 17 C 1.37906 * 119.24067 * 359.97438 * 16 15 3 18 18 C 1.34608 * 119.60478 * 180.26355 * 2 1 3 19 19 O 1.22115 * 119.84577 * 359.97438 * 18 2 1 20 20 H 1.09006 * 109.46928 * 84.77176 * 1 2 3 21 21 H 1.09008 * 109.47183 * 204.77067 * 1 2 3 22 22 H 1.09002 * 109.47290 * 324.77436 * 1 2 3 23 23 H 0.97002 * 119.99511 * 4.95127 * 4 3 2 24 24 H 1.09006 * 109.47299 * 295.29630 * 5 4 3 25 25 H 1.09000 * 109.47228 * 55.29641 * 5 4 3 26 26 H 1.09006 * 109.46955 * 300.00182 * 6 5 4 27 27 H 1.09000 * 109.47028 * 59.99860 * 6 5 4 28 28 H 0.97005 * 120.00215 * 180.02562 * 10 9 7 29 29 H 1.07994 * 120.16729 * 180.27736 * 15 3 2 30 30 H 1.07996 * 120.38159 * 180.02562 * 16 15 3 31 31 H 1.07999 * 120.22341 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1379 1.1844 0.0000 4 7 1.4374 2.3684 0.0005 5 6 2.1521 3.6424 -0.1089 6 6 1.1418 4.7876 -0.2022 7 6 1.8770 6.0982 -0.3154 8 1 2.9569 6.1129 -0.3199 9 6 1.1711 7.2786 -0.4122 10 7 -0.1439 7.2607 -0.4062 11 14 2.0824 8.9032 -0.5518 12 1 3.5461 8.6526 -0.5364 13 1 1.7087 9.5727 -1.8236 14 1 1.7170 9.7758 0.5929 15 6 3.5164 1.2045 0.0053 16 6 4.2240 0.0037 0.0052 17 6 3.5292 -1.1876 0.0004 18 6 2.1300 -1.1703 -0.0054 19 8 1.5093 -2.2220 -0.0097 20 1 -0.3633 0.0937 -1.0235 21 1 -0.3634 -0.9332 0.4306 22 1 -0.3634 0.8395 0.5928 23 1 0.4702 2.3595 0.0734 24 1 2.7807 3.7832 0.7705 25 1 2.7752 3.6338 -1.0032 26 1 0.5133 4.6468 -1.0816 27 1 0.5187 4.7962 0.6921 28 1 -0.6406 8.0910 -0.4746 29 1 4.0454 2.1460 0.0098 30 1 5.3039 0.0061 0.0098 31 1 4.0614 -2.1273 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306553934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:21 Heat of formation + Delta-G solvation = -6.834594 kcal Electronic energy + Delta-G solvation = -14568.453321 eV Core-core repulsion = 12043.096269 eV Total energy + Delta-G solvation = -2525.357052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14783 -37.65593 -35.20895 -34.36869 -33.07568 -30.14614 -27.90193 -27.56492 -25.13302 -22.66208 -22.34663 -20.87517 -18.16964 -17.19112 -16.62854 -16.06601 -15.94866 -14.74350 -14.50874 -14.45253 -14.28123 -14.09929 -13.12246 -12.71210 -12.43234 -12.11726 -12.05392 -11.67778 -11.25485 -11.14039 -10.75512 -10.52267 -9.95359 -9.89219 -9.69947 -9.46310 -9.00250 -8.58249 -7.06194 -6.24589 -4.29044 1.29169 2.24966 2.55573 3.18679 3.27022 3.30034 3.53976 3.98141 4.29150 4.75936 5.03027 5.13233 5.19268 5.35585 5.51750 5.65524 5.68587 5.75107 5.98606 6.08759 6.25628 6.41540 6.60045 6.71641 6.95874 7.24508 7.37415 7.45615 7.64476 7.74201 8.08729 8.32661 8.76572 9.37227 10.86951 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.057007 B = 0.005339 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.050434 B = 5243.457964 C = 5705.105185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.519 5.519 3 C 0.459 3.541 4 N -0.716 5.716 5 C 0.125 3.875 6 C 0.012 3.988 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.337 4.337 16 C 0.039 3.961 17 C -0.338 4.338 18 C 0.532 3.468 19 O -0.575 6.575 20 H 0.075 0.925 21 H 0.100 0.900 22 H 0.078 0.922 23 H 0.401 0.599 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -8.970 0.923 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.238 5.238 3 C 0.240 3.760 4 N -0.343 5.343 5 C 0.003 3.997 6 C -0.026 4.026 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.726 3.274 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.364 4.364 16 C 0.016 3.984 17 C -0.361 4.361 18 C 0.339 3.661 19 O -0.460 6.460 20 H 0.094 0.906 21 H 0.118 0.882 22 H 0.097 0.903 23 H 0.238 0.762 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.146 0.854 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.533 -9.318 0.896 10.006 hybrid contribution -0.070 1.105 -0.067 1.110 sum 3.463 -8.213 0.829 8.951 Atomic orbital electron populations 1.22047 0.78276 1.05050 1.03636 1.45516 1.08781 1.06057 1.63442 1.18150 0.90255 0.79579 0.88021 1.45342 1.09929 1.03729 1.75325 1.22011 0.96799 0.80032 1.00898 1.19336 0.94057 0.91111 0.98072 1.21001 0.93252 0.90505 1.51646 0.92026 1.25002 0.94878 0.99553 0.94757 1.69953 1.05732 1.27649 1.49683 0.86431 0.80009 0.83191 0.77788 1.19509 1.20856 1.20853 1.20149 0.89161 1.00000 1.27100 1.21247 0.99683 0.91368 0.86088 1.21668 0.91971 0.99299 1.23189 1.16810 0.89263 0.81470 0.78599 1.90898 1.70104 1.29391 1.55648 0.90601 0.88177 0.90324 0.76195 0.91929 0.91661 0.95780 0.95825 0.92705 0.83951 0.85447 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 9.86 59.85 0.59 1.22 16 2 N -0.52 -7.77 3.00 -126.35 -0.38 -8.15 16 3 C 0.46 6.79 7.37 -153.49 -1.13 5.66 16 4 N -0.72 -10.66 5.52 -60.21 -0.33 -10.99 16 5 C 0.12 2.15 4.81 -4.05 -0.02 2.13 16 6 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 7 C -0.53 -13.31 9.11 -34.44 -0.31 -13.62 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 11 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 C -0.34 -4.73 9.28 -39.29 -0.36 -5.10 16 16 C 0.04 0.50 10.13 -39.28 -0.40 0.10 16 17 C -0.34 -5.03 10.01 -39.07 -0.39 -5.43 16 18 C 0.53 9.07 7.38 -15.70 -0.12 8.95 16 19 O -0.57 -11.39 16.54 4.81 0.08 -11.31 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.10 1.24 7.23 -51.92 -0.38 0.86 16 22 H 0.08 0.79 6.56 -51.93 -0.34 0.45 16 23 H 0.40 5.51 6.33 -40.82 -0.26 5.26 16 24 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 25 H 0.07 1.11 7.87 -51.93 -0.41 0.71 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.14 1.89 6.63 -52.49 -0.35 1.54 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 266.85 15.07 4.02 4.02 Total: -1.00 -29.99 266.85 -7.08 -37.06 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.80 Total: 2.78 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.38 Total: -4.46 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.03 Total: -43.17 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.99 -7.08 -37.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306553934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.228 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds