Wall clock time and date at job start Mon Mar 30 2020 03:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36226 * 119.60342 * 2 1 4 4 N 1.37566 * 119.78284 * 0.02562 * 3 2 1 5 5 C 1.46492 * 119.99969 * 184.94878 * 4 3 2 6 6 C 1.52998 * 109.47232 * 175.29658 * 5 4 3 7 7 C 1.50696 * 109.47466 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00021 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00498 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99362 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00392 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46912 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46865 * 119.99838 * 11 9 7 14 14 H 1.48497 * 109.47245 * 239.99887 * 11 9 7 15 15 C 1.37861 * 120.43761 * 179.74534 * 3 2 1 16 16 C 1.39379 * 119.67293 * 0.25619 * 15 3 2 17 17 C 1.37906 * 119.24067 * 359.97438 * 16 15 3 18 18 C 1.34608 * 119.60478 * 180.26355 * 2 1 3 19 19 O 1.22115 * 119.84577 * 359.97438 * 18 2 1 20 20 H 1.09006 * 109.46928 * 84.77176 * 1 2 3 21 21 H 1.09008 * 109.47183 * 204.77067 * 1 2 3 22 22 H 1.09002 * 109.47290 * 324.77436 * 1 2 3 23 23 H 0.97002 * 119.99511 * 4.95127 * 4 3 2 24 24 H 1.09006 * 109.47299 * 295.29630 * 5 4 3 25 25 H 1.09000 * 109.47228 * 55.29641 * 5 4 3 26 26 H 1.09006 * 109.46955 * 300.00182 * 6 5 4 27 27 H 1.09000 * 109.47028 * 59.99860 * 6 5 4 28 28 H 0.97005 * 120.00215 * 180.02562 * 10 9 7 29 29 H 1.07994 * 120.16729 * 180.27736 * 15 3 2 30 30 H 1.07996 * 120.38159 * 180.02562 * 16 15 3 31 31 H 1.07999 * 120.22341 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1379 1.1844 0.0000 4 7 1.4374 2.3684 0.0005 5 6 2.1521 3.6424 -0.1089 6 6 1.1418 4.7876 -0.2022 7 6 1.8770 6.0982 -0.3154 8 1 2.9569 6.1129 -0.3199 9 6 1.1711 7.2786 -0.4122 10 7 -0.1439 7.2607 -0.4062 11 14 2.0824 8.9032 -0.5518 12 1 3.5461 8.6526 -0.5364 13 1 1.7087 9.5727 -1.8236 14 1 1.7170 9.7758 0.5929 15 6 3.5164 1.2045 0.0053 16 6 4.2240 0.0037 0.0052 17 6 3.5292 -1.1876 0.0004 18 6 2.1300 -1.1703 -0.0054 19 8 1.5093 -2.2220 -0.0097 20 1 -0.3633 0.0937 -1.0235 21 1 -0.3634 -0.9332 0.4306 22 1 -0.3634 0.8395 0.5928 23 1 0.4702 2.3595 0.0734 24 1 2.7807 3.7832 0.7705 25 1 2.7752 3.6338 -1.0032 26 1 0.5133 4.6468 -1.0816 27 1 0.5187 4.7962 0.6921 28 1 -0.6406 8.0910 -0.4746 29 1 4.0454 2.1460 0.0098 30 1 5.3039 0.0061 0.0098 31 1 4.0614 -2.1273 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306553934.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:21 Heat of formation + Delta-G solvation = -25.018663 kcal Electronic energy + Delta-G solvation = -14569.241842 eV Core-core repulsion = 12043.096269 eV Total energy + Delta-G solvation = -2526.145573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33232 -38.95319 -36.62303 -35.48826 -34.86134 -31.78329 -29.15995 -28.63369 -26.80077 -24.10375 -23.51360 -22.33070 -19.42906 -18.51914 -18.26948 -17.25590 -17.20231 -16.51076 -15.82586 -15.77045 -15.67633 -15.27744 -14.27580 -14.26543 -13.75276 -13.50773 -13.37101 -12.99238 -12.83523 -12.61729 -12.46395 -12.10908 -11.61471 -11.35993 -11.05998 -11.01321 -10.60494 -10.22105 -8.25910 -8.23109 -6.33121 0.16574 1.04831 1.37820 1.43682 1.46940 1.57590 2.30915 2.47765 2.81808 3.13750 3.73616 3.98461 4.21734 4.29716 4.32761 4.53421 4.55071 4.60784 4.64432 4.81811 4.88183 5.16796 5.38753 5.52950 5.58100 5.60879 5.75385 5.83735 6.13598 6.20948 6.50571 6.83321 7.09074 7.37339 8.88971 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.057007 B = 0.005339 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.050434 B = 5243.457964 C = 5705.105185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.519 5.519 3 C 0.450 3.550 4 N -0.715 5.715 5 C 0.145 3.855 6 C 0.016 3.984 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.005 3.995 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.258 1.258 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.335 4.335 16 C 0.055 3.945 17 C -0.353 4.353 18 C 0.514 3.486 19 O -0.617 6.617 20 H 0.086 0.914 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.406 0.594 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.003 0.997 27 H 0.004 0.996 28 H 0.263 0.737 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -8.410 0.943 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.236 5.236 3 C 0.232 3.768 4 N -0.343 5.343 5 C 0.023 3.977 6 C -0.021 4.021 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.194 4.194 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.181 1.181 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.362 4.362 16 C 0.033 3.967 17 C -0.376 4.376 18 C 0.323 3.677 19 O -0.506 6.506 20 H 0.104 0.896 21 H 0.112 0.888 22 H 0.116 0.884 23 H 0.243 0.757 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.021 0.979 27 H 0.023 0.977 28 H 0.072 0.928 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.430 -8.757 0.919 10.345 hybrid contribution -0.642 0.929 -0.071 1.132 sum 4.788 -7.828 0.847 9.216 Atomic orbital electron populations 1.22223 0.77018 1.05572 1.04679 1.45517 1.09809 1.05697 1.62577 1.18251 0.90654 0.79241 0.88666 1.45057 1.10099 1.03138 1.75981 1.21589 0.95244 0.79242 1.01667 1.19171 0.94511 0.92350 0.96095 1.21507 0.93994 0.91752 1.50356 0.91067 1.25873 0.95572 1.03231 0.94720 1.70072 1.07295 1.28450 1.51290 0.85424 0.79398 0.78957 0.77439 1.18117 1.20911 1.20852 1.20518 0.88923 1.01080 1.25657 1.21591 1.01529 0.89905 0.83672 1.21832 0.91212 1.00656 1.23927 1.17217 0.90182 0.81408 0.78859 1.90867 1.70957 1.30688 1.58134 0.89584 0.88765 0.88428 0.75685 0.91002 0.90942 0.97886 0.97734 0.92778 0.82645 0.81557 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.09 9.86 127.77 1.26 2.35 16 2 N -0.52 -15.01 3.00 -671.81 -2.01 -17.02 16 3 C 0.45 12.42 7.37 132.06 0.97 13.40 16 4 N -0.71 -20.05 5.52 -344.40 -1.90 -21.96 16 5 C 0.15 4.73 4.81 86.38 0.42 5.14 16 6 C 0.02 0.72 5.09 29.85 0.15 0.87 16 7 C -0.54 -26.69 9.11 25.60 0.23 -26.46 16 8 H 0.07 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.00 0.24 5.46 84.66 0.46 0.70 16 10 N -0.93 -52.08 13.29 21.45 0.28 -51.80 16 11 Si 0.96 40.58 29.54 68.60 2.03 42.60 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 C -0.33 -8.35 9.28 22.46 0.21 -8.14 16 16 C 0.06 1.25 10.13 22.47 0.23 1.47 16 17 C -0.35 -9.92 10.01 22.60 0.23 -9.70 16 18 C 0.51 17.28 7.38 84.68 0.63 17.91 16 19 O -0.62 -24.79 16.54 -5.69 -0.09 -24.88 16 20 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 21 H 0.09 2.35 7.23 -2.38 -0.02 2.33 16 22 H 0.10 1.88 6.56 -2.39 -0.02 1.87 16 23 H 0.41 10.69 6.33 -92.71 -0.59 10.10 16 24 H 0.07 2.23 7.93 -2.38 -0.02 2.21 16 25 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 26 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 27 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 29 H 0.16 3.50 6.63 -2.91 -0.02 3.48 16 30 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -63.91 266.85 3.63 -60.28 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.55 Total: 15.23 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.78 Total: -2.45 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.63 Total: -90.77 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.09 Total: -24.88 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -63.91 3.63 -60.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306553934.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.256 kcal (2) G-P(sol) polarization free energy of solvation -63.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds