Wall clock time and date at job start Mon Mar 30 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46787 * 2 1 4 4 O 1.42899 * 109.47216 * 120.00038 * 2 1 3 5 5 C 1.52996 * 109.46750 * 240.00170 * 2 1 3 6 6 N 1.46504 * 109.47009 * 179.97438 * 5 2 1 7 7 C 1.39247 * 120.00428 * 179.97438 * 6 5 2 8 8 C 1.39715 * 120.77805 * 0.02562 * 7 6 5 9 9 C 1.38455 * 119.46826 * 180.02562 * 8 7 6 10 10 N 1.31534 * 121.10680 * 359.97215 * 9 8 7 11 11 C 1.33692 * 121.69883 * 0.05096 * 10 9 8 12 12 C 1.41454 * 119.79373 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99968 * 179.97438 * 12 11 10 14 14 C 1.40018 * 120.00238 * 359.97438 * 12 11 10 15 15 N 1.30744 * 119.99467 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00207 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47156 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46864 * 120.00242 * 16 14 12 19 19 H 1.48502 * 109.47351 * 240.00520 * 16 14 12 20 20 C 1.39019 * 120.78664 * 180.02562 * 7 6 5 21 21 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47292 * 299.99874 * 1 2 3 23 23 H 1.09005 * 109.47765 * 59.99806 * 1 2 3 24 24 H 0.96698 * 113.99652 * 59.99749 * 4 2 1 25 25 H 1.09004 * 109.47392 * 59.99861 * 5 2 1 26 26 H 1.08999 * 109.47336 * 299.99493 * 5 2 1 27 27 H 0.97008 * 119.99798 * 0.02562 * 6 5 2 28 28 H 1.08002 * 120.26734 * 359.74079 * 8 7 6 29 29 H 1.08002 * 119.44104 * 180.02562 * 9 8 7 30 30 H 0.97002 * 119.99560 * 179.97438 * 15 14 12 31 31 H 1.08001 * 120.55954 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0399 -0.7212 -1.2493 6 7 3.5050 -0.7207 -1.2496 7 6 4.2012 -1.3240 -2.2938 8 6 3.5192 -1.9341 -3.3495 9 6 4.2387 -2.5263 -4.3735 10 7 5.5541 -2.5239 -4.3695 11 6 6.2525 -1.9539 -3.3822 12 6 7.6664 -1.9753 -3.4183 13 1 8.2339 -1.5155 -2.6227 14 6 8.3302 -2.5925 -4.4855 15 7 7.6432 -3.1487 -5.4488 16 14 10.1974 -2.6201 -4.5335 17 1 10.7337 -1.9273 -3.3345 18 1 10.6714 -4.0274 -4.5449 19 1 10.6713 -1.9281 -5.7590 20 6 5.5913 -1.3335 -2.3103 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3635 0.5139 -0.8900 24 1 1.7210 -1.5952 1.2328 25 1 1.6765 -0.2074 -2.1393 26 1 1.6766 -1.7489 -1.2493 27 1 3.9900 -0.3007 -0.5220 28 1 2.4394 -1.9476 -3.3645 29 1 3.7110 -2.9974 -5.1896 30 1 8.1030 -3.5759 -6.1883 31 1 6.1531 -0.8724 -1.5114 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306559560.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:16 Heat of formation + Delta-G solvation = -48.170877 kcal Electronic energy + Delta-G solvation = -14517.781934 eV Core-core repulsion = 11990.632406 eV Total energy + Delta-G solvation = -2527.149528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21267 -38.88870 -36.39739 -35.08639 -32.50719 -31.78247 -30.27241 -27.77114 -26.32606 -23.66287 -22.71074 -22.18228 -19.39165 -17.89470 -17.52981 -16.94026 -16.57025 -16.29396 -15.88566 -15.06900 -14.84969 -14.59338 -14.37327 -14.00329 -13.69908 -13.27360 -12.94159 -12.85402 -12.76460 -12.58281 -12.13051 -11.79628 -11.57110 -11.43889 -11.05899 -10.94704 -9.53393 -9.41603 -8.34651 -8.23563 -6.49724 0.97094 1.39842 1.41563 1.57402 1.59307 2.25481 2.64325 2.91199 3.51438 3.77190 4.04003 4.10724 4.23212 4.30075 4.62428 4.63725 4.71338 4.85099 4.87618 5.06971 5.14319 5.23018 5.25249 5.41430 5.70393 5.72515 5.88850 6.30833 6.61799 6.75249 6.85406 6.99116 7.11414 8.32461 8.51793 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060239 B = 0.005655 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.703312 B = 4950.606169 C = 5333.422967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.099 0.901 4 O -0.577 6.577 5 C 0.099 3.901 6 N -0.741 5.741 7 C 0.260 3.740 8 C -0.367 4.367 9 C 0.131 3.869 10 N -0.546 5.546 11 C 0.250 3.750 12 C -0.475 4.475 13 H 0.082 0.918 14 C 0.025 3.975 15 N -0.757 5.757 16 Si 0.988 3.012 17 H -0.256 1.256 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.371 4.371 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.388 0.612 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.398 0.602 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.278 0.722 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 3.625 7.155 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.117 0.883 4 O -0.385 6.385 5 C -0.025 4.025 6 N -0.373 5.373 7 C 0.152 3.848 8 C -0.395 4.395 9 C -0.035 4.035 10 N -0.261 5.261 11 C 0.126 3.874 12 C -0.506 4.506 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.379 5.379 16 Si 0.808 3.192 17 H -0.180 1.180 18 H -0.189 1.189 19 H -0.189 1.189 20 C -0.398 4.398 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.096 0.904 24 H 0.237 0.763 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.232 0.768 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.489 3.685 6.372 12.009 hybrid contribution 0.165 -0.068 0.585 0.612 sum -9.323 3.617 6.957 12.182 Atomic orbital electron populations 1.22355 0.93367 1.03719 1.03727 1.22109 0.94833 0.96291 0.82791 0.88311 1.86551 1.77897 1.30301 1.43716 1.22097 0.80278 1.00757 0.99395 1.44351 1.05385 1.63539 1.23986 1.17755 0.90504 0.89033 0.87547 1.21095 0.99241 1.18369 1.00779 1.22766 0.91334 0.93518 0.95857 1.68706 1.06534 1.23514 1.27379 1.18778 0.94404 0.87195 0.87061 1.19965 0.90825 1.32690 1.07129 0.89948 1.26999 1.05744 0.92917 0.93959 1.70266 1.38892 1.22148 1.06589 0.85091 0.75573 0.79084 0.79469 1.17978 1.18942 1.18934 1.21242 0.92849 1.20293 1.05388 0.91145 0.90868 0.90407 0.76309 0.91831 0.92309 0.76790 0.86028 0.84520 0.91170 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.53 71.98 0.69 -1.71 16 2 C 0.10 1.95 3.67 30.59 0.11 2.06 16 3 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 4 O -0.58 -12.64 13.08 -148.98 -1.95 -14.59 16 5 C 0.10 2.54 4.61 86.38 0.40 2.94 16 6 N -0.74 -25.75 5.61 -338.99 -1.90 -27.65 16 7 C 0.26 11.83 6.69 38.51 0.26 12.09 16 8 C -0.37 -16.51 9.40 22.68 0.21 -16.29 16 9 C 0.13 6.59 11.17 84.79 0.95 7.53 16 10 N -0.55 -32.09 7.86 -189.37 -1.49 -33.58 16 11 C 0.25 14.75 6.55 40.18 0.26 15.01 16 12 C -0.48 -27.37 9.14 23.49 0.21 -27.16 16 13 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 14 C 0.03 1.34 5.50 85.29 0.47 1.81 16 15 N -0.76 -42.63 11.46 21.83 0.25 -42.38 16 16 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 C -0.37 -19.47 9.72 22.98 0.22 -19.25 16 21 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.39 6.21 9.04 -74.06 -0.67 5.54 16 25 H 0.06 1.62 7.99 -2.38 -0.02 1.60 16 26 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 27 H 0.40 13.31 8.38 -92.70 -0.78 12.54 16 28 H 0.12 4.60 6.87 -2.91 -0.02 4.58 16 29 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 30 H 0.28 14.01 8.29 -92.71 -0.77 13.24 16 31 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -69.05 269.97 0.42 -68.63 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: -0.30 Total: 30.78 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.78 Total: -22.97 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -3.14 Total: -103.61 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.95 Total: -14.59 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -69.05 0.42 -68.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306559560.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.463 kcal (2) G-P(sol) polarization free energy of solvation -69.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds