Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47025 * 2 1 4 4 C 1.35759 * 117.00177 * 180.02562 * 3 2 1 5 5 C 1.41139 * 120.29553 * 89.99835 * 4 3 2 6 6 C 1.41186 * 120.25820 * 0.02562 * 5 4 3 7 7 H 1.08002 * 119.99637 * 24.59918 * 6 5 4 8 8 C 1.39921 * 120.00401 * 204.32349 * 6 5 4 9 9 N 1.30875 * 119.99900 * 17.85022 * 8 6 5 10 10 Si 1.86802 * 120.00181 * 197.84987 * 8 6 5 11 11 H 1.48506 * 109.46998 * 60.00201 * 10 8 6 12 12 H 1.48498 * 109.46861 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47045 * 299.99904 * 10 8 6 14 14 C 1.40794 * 119.48843 * 179.72425 * 5 4 3 15 15 C 1.36493 * 120.05835 * 0.27877 * 14 5 4 16 16 C 1.38751 * 120.59531 * 359.95065 * 15 14 5 17 17 C 1.38851 * 120.52078 * 0.02700 * 16 15 14 18 18 N 1.40008 * 120.03673 * 180.02562 * 17 16 15 19 19 N 1.36603 * 120.00327 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47131 * 299.99813 * 1 2 3 21 21 H 1.09002 * 109.47220 * 59.99933 * 1 2 3 22 22 H 1.08999 * 109.46566 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47131 * 240.00187 * 2 1 3 24 24 H 1.09002 * 109.47220 * 120.00067 * 2 1 3 25 25 H 0.96997 * 119.99763 * 180.02562 * 9 8 6 26 26 H 1.08000 * 119.97190 * 180.25074 * 14 5 4 27 27 H 1.07995 * 119.69978 * 179.97438 * 15 14 5 28 28 H 1.08004 * 119.73424 * 180.02562 * 16 15 14 29 29 H 0.97004 * 119.99681 * 180.02562 * 18 17 16 30 30 H 1.00898 * 110.99788 * 56.04569 * 19 18 17 31 31 H 1.00903 * 110.99965 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3522 1.5252 -0.0005 5 6 4.0575 1.6187 -1.2195 6 6 3.3689 1.5284 -2.4487 7 1 2.3205 1.7830 -2.5002 8 6 4.0458 1.1147 -3.6012 9 7 5.1893 0.4865 -3.4985 10 14 3.3174 1.4590 -5.2866 11 1 3.1618 2.9246 -5.4686 12 1 4.2221 0.9237 -6.3355 13 1 1.9897 0.8029 -5.3954 14 6 5.4524 1.8091 -1.2002 15 6 6.1141 1.8962 -0.0096 16 6 5.4243 1.8000 1.1904 17 6 4.0486 1.6126 1.1999 18 7 3.3626 1.5173 2.4167 19 7 4.0468 1.6082 3.5955 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 5.6588 0.2001 -4.2975 26 1 5.9994 1.8857 -2.1283 27 1 7.1842 2.0419 -0.0016 28 1 5.9619 1.8713 2.1245 29 1 2.4015 1.3861 2.4226 30 1 4.5726 2.4680 3.6430 31 1 3.4226 1.5216 4.3835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306570251.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = 1.829644 kcal Electronic energy + Delta-G solvation = -15244.996121 eV Core-core repulsion = 12720.014778 eV Total energy + Delta-G solvation = -2524.981343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.62990 -36.27577 -35.53083 -33.37588 -30.93416 -29.66593 -28.72246 -25.70104 -25.04707 -22.22486 -20.59112 -20.49326 -17.71990 -16.94866 -16.21723 -15.57227 -15.03905 -14.66055 -14.13062 -13.79821 -13.17562 -13.04281 -12.71598 -12.05017 -11.87826 -11.48777 -11.35555 -11.06623 -11.00990 -10.76434 -10.46400 -10.08660 -10.05621 -9.51488 -9.12848 -8.53538 -8.13855 -7.28054 -6.76020 -6.03100 -4.31575 2.77428 3.05559 3.07986 3.12065 3.33666 3.86954 3.96108 4.63575 4.94900 5.61564 5.68377 5.77518 5.87072 6.14953 6.26164 6.43146 6.57115 6.68433 6.76200 6.86125 7.07543 7.21729 7.32278 7.34919 7.71387 7.96518 8.11407 8.17718 8.49385 8.55537 8.82084 8.92296 9.06384 9.29631 10.17886 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.010804 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.440365 B = 2591.097895 C = 3474.631311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.318 6.318 4 C -0.101 4.101 5 C 0.132 3.868 6 C -0.444 4.444 7 H 0.083 0.917 8 C 0.075 3.925 9 N -0.786 5.786 10 Si 0.908 3.092 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.265 1.265 14 C -0.191 4.191 15 C -0.074 4.074 16 C -0.289 4.289 17 C 0.229 3.771 18 N -0.612 5.612 19 N -0.600 5.600 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.281 0.719 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.395 0.605 30 H 0.323 0.677 31 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 0.429 4.775 6.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.235 6.235 4 C -0.150 4.150 5 C 0.128 3.872 6 C -0.473 4.473 7 H 0.101 0.899 8 C -0.143 4.143 9 N -0.411 5.411 10 Si 0.733 3.267 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.190 1.190 14 C -0.212 4.212 15 C -0.094 4.094 16 C -0.313 4.313 17 C 0.129 3.871 18 N -0.340 5.340 19 N -0.223 5.223 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.232 0.768 30 H 0.137 0.863 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.348 -0.196 4.504 5.615 hybrid contribution -1.003 0.582 -0.408 1.229 sum -4.350 0.386 4.096 5.987 Atomic orbital electron populations 1.21700 0.95340 1.01000 1.02151 1.22532 0.93445 0.86765 0.99695 1.86033 1.19581 1.23764 1.94156 1.17995 0.83094 1.23508 0.90438 1.17565 0.91668 0.86806 0.91115 1.19476 0.97825 1.38327 0.91651 0.89919 1.25978 0.94367 0.92441 1.01544 1.69872 1.13789 1.25677 1.31772 0.86366 0.79746 0.80099 0.80527 1.18734 1.20365 1.18992 1.20860 0.94701 1.08882 0.96733 1.20236 0.97276 0.99051 0.92805 1.19696 0.91517 1.23053 0.97001 1.17684 0.91283 0.95774 0.82338 1.43172 1.07007 1.84811 0.99056 1.60181 1.25371 1.41498 0.95256 0.92969 0.92133 0.92178 0.93186 0.95153 0.90802 0.86453 0.89363 0.88595 0.76844 0.86317 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.28 37.16 0.38 -1.91 16 2 C 0.05 1.04 6.78 37.16 0.25 1.29 16 3 O -0.32 -7.46 8.60 -18.99 -0.16 -7.62 16 4 C -0.10 -2.56 5.78 -38.18 -0.22 -2.78 16 5 C 0.13 3.60 5.58 -106.71 -0.60 3.00 16 6 C -0.44 -11.92 8.72 -37.83 -0.33 -12.25 16 7 H 0.08 2.21 7.65 -52.49 -0.40 1.81 16 8 C 0.08 1.90 5.14 -17.33 -0.09 1.81 16 9 N -0.79 -20.29 10.96 55.55 0.61 -19.68 16 10 Si 0.91 18.82 29.59 -169.99 -5.03 13.79 16 11 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 12 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 13 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 14 C -0.19 -5.06 8.64 -39.25 -0.34 -5.40 16 15 C -0.07 -1.80 9.96 -40.02 -0.40 -2.20 16 16 C -0.29 -6.77 9.36 -39.16 -0.37 -7.14 16 17 C 0.23 5.39 6.71 -83.59 -0.56 4.83 16 18 N -0.61 -11.83 6.66 32.49 0.22 -11.62 16 19 N -0.60 -9.49 9.60 60.35 0.58 -8.91 16 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 26 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 27 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.10 2.06 7.02 -52.48 -0.37 1.69 16 29 H 0.39 7.17 8.20 -185.15 -1.52 5.65 16 30 H 0.32 4.84 8.43 -181.37 -1.53 3.31 16 31 H 0.34 4.08 9.21 -181.36 -1.67 2.41 16 LS Contribution 267.41 15.07 4.03 4.03 Total: -1.00 -28.90 267.41 -9.51 -38.41 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.48 Total: 12.33 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.27 Total: -20.74 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 1.40 Total: -40.20 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.16 Total: -7.62 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.90 -9.51 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306570251.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.239 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds