Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47025 * 2 1 4 4 C 1.35759 * 117.00177 * 180.02562 * 3 2 1 5 5 C 1.41139 * 120.29553 * 89.99835 * 4 3 2 6 6 C 1.41186 * 120.25820 * 0.02562 * 5 4 3 7 7 H 1.08002 * 119.99637 * 24.59918 * 6 5 4 8 8 C 1.39921 * 120.00401 * 204.32349 * 6 5 4 9 9 N 1.30875 * 119.99900 * 17.85022 * 8 6 5 10 10 Si 1.86802 * 120.00181 * 197.84987 * 8 6 5 11 11 H 1.48506 * 109.46998 * 60.00201 * 10 8 6 12 12 H 1.48498 * 109.46861 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47045 * 299.99904 * 10 8 6 14 14 C 1.40794 * 119.48843 * 179.72425 * 5 4 3 15 15 C 1.36493 * 120.05835 * 0.27877 * 14 5 4 16 16 C 1.38751 * 120.59531 * 359.95065 * 15 14 5 17 17 C 1.38851 * 120.52078 * 0.02700 * 16 15 14 18 18 N 1.40008 * 120.03673 * 180.02562 * 17 16 15 19 19 N 1.36603 * 120.00327 * 359.97438 * 18 17 16 20 20 H 1.09003 * 109.47131 * 299.99813 * 1 2 3 21 21 H 1.09002 * 109.47220 * 59.99933 * 1 2 3 22 22 H 1.08999 * 109.46566 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47131 * 240.00187 * 2 1 3 24 24 H 1.09002 * 109.47220 * 120.00067 * 2 1 3 25 25 H 0.96997 * 119.99763 * 180.02562 * 9 8 6 26 26 H 1.08000 * 119.97190 * 180.25074 * 14 5 4 27 27 H 1.07995 * 119.69978 * 179.97438 * 15 14 5 28 28 H 1.08004 * 119.73424 * 180.02562 * 16 15 14 29 29 H 0.97004 * 119.99681 * 180.02562 * 18 17 16 30 30 H 1.00898 * 110.99788 * 56.04569 * 19 18 17 31 31 H 1.00903 * 110.99965 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3522 1.5252 -0.0005 5 6 4.0575 1.6187 -1.2195 6 6 3.3689 1.5284 -2.4487 7 1 2.3205 1.7830 -2.5002 8 6 4.0458 1.1147 -3.6012 9 7 5.1893 0.4865 -3.4985 10 14 3.3174 1.4590 -5.2866 11 1 3.1618 2.9246 -5.4686 12 1 4.2221 0.9237 -6.3355 13 1 1.9897 0.8029 -5.3954 14 6 5.4524 1.8091 -1.2002 15 6 6.1141 1.8962 -0.0096 16 6 5.4243 1.8000 1.1904 17 6 4.0486 1.6126 1.1999 18 7 3.3626 1.5173 2.4167 19 7 4.0468 1.6082 3.5955 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 5.6588 0.2001 -4.2975 26 1 5.9994 1.8857 -2.1283 27 1 7.1842 2.0419 -0.0016 28 1 5.9619 1.8713 2.1245 29 1 2.4015 1.3861 2.4226 30 1 4.5726 2.4680 3.6430 31 1 3.4226 1.5216 4.3835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306570251.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -16.910148 kcal Electronic energy + Delta-G solvation = -15245.808739 eV Core-core repulsion = 12720.014778 eV Total energy + Delta-G solvation = -2525.793961 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.43048 -37.94516 -37.27555 -35.22590 -32.48546 -31.45094 -30.46461 -27.39643 -26.93553 -23.78344 -22.42114 -22.33524 -19.48457 -18.61316 -18.02591 -17.27368 -16.75353 -16.28788 -15.78125 -15.46068 -14.91795 -14.80971 -14.46345 -13.58975 -13.42771 -13.15198 -13.03455 -12.86040 -12.63885 -12.34297 -12.12599 -11.83846 -11.82515 -11.39623 -10.98698 -10.33835 -9.77089 -9.21493 -8.63541 -7.70710 -6.30569 0.92875 1.23139 1.38033 1.49234 1.58411 2.20666 2.38981 2.75211 3.21425 3.87806 4.20973 4.32831 4.46059 4.63643 4.64801 4.76956 5.00503 5.08828 5.16006 5.23538 5.29462 5.33168 5.48238 5.74278 5.94626 6.09509 6.22316 6.28422 6.58803 6.80886 6.90668 6.99665 7.42949 7.58886 8.32465 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026802 B = 0.010804 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.440365 B = 2591.097895 C = 3474.631311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.051 3.949 3 O -0.327 6.327 4 C -0.118 4.118 5 C 0.101 3.899 6 C -0.476 4.476 7 H 0.071 0.929 8 C 0.037 3.963 9 N -0.816 5.816 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.264 1.264 13 H -0.261 1.261 14 C -0.220 4.220 15 C -0.075 4.075 16 C -0.292 4.292 17 C 0.227 3.773 18 N -0.604 5.604 19 N -0.603 5.603 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.020 0.980 24 H 0.035 0.965 25 H 0.289 0.711 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.401 0.599 30 H 0.333 0.667 31 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 0.336 5.680 7.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 O -0.245 6.245 4 C -0.168 4.168 5 C 0.098 3.902 6 C -0.505 4.505 7 H 0.089 0.911 8 C -0.179 4.179 9 N -0.441 5.441 10 Si 0.799 3.201 11 H -0.186 1.186 12 H -0.188 1.188 13 H -0.185 1.185 14 C -0.241 4.241 15 C -0.094 4.094 16 C -0.315 4.315 17 C 0.125 3.875 18 N -0.330 5.330 19 N -0.229 5.229 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.107 0.893 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.238 0.762 30 H 0.148 0.852 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.114 -0.295 5.466 6.848 hybrid contribution -0.766 0.581 -0.494 1.081 sum -4.880 0.286 4.972 6.973 Atomic orbital electron populations 1.21681 0.91644 1.03122 1.02746 1.22667 0.96314 0.85024 0.98450 1.85970 1.18733 1.25624 1.94127 1.18178 0.83871 1.23948 0.90832 1.17950 0.92460 0.87591 0.92240 1.19567 0.97569 1.40365 0.92975 0.91096 1.26773 0.94665 0.91551 1.04927 1.69915 1.14900 1.26064 1.33197 0.85307 0.79159 0.79838 0.75751 1.18567 1.18837 1.18503 1.20814 0.94758 1.11472 0.97089 1.20517 0.98582 0.97872 0.92394 1.19973 0.91710 1.22293 0.97559 1.17737 0.91558 0.94786 0.83430 1.43042 1.07204 1.83662 0.99132 1.60040 1.25998 1.42285 0.94567 0.91179 0.92697 0.89279 0.96189 0.94642 0.90021 0.87993 0.86952 0.86300 0.76156 0.85235 0.82187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 10.28 71.98 0.74 -3.28 16 2 C 0.05 2.05 6.78 71.98 0.49 2.54 16 3 O -0.33 -15.45 8.60 -90.85 -0.78 -16.23 16 4 C -0.12 -6.10 5.78 23.18 0.13 -5.97 16 5 C 0.10 5.69 5.58 -21.22 -0.12 5.58 16 6 C -0.48 -26.54 8.72 23.40 0.20 -26.33 16 7 H 0.07 3.96 7.65 -2.91 -0.02 3.94 16 8 C 0.04 1.89 5.14 85.24 0.44 2.33 16 9 N -0.82 -43.18 10.96 21.83 0.24 -42.94 16 10 Si 0.98 39.06 29.59 68.60 2.03 41.09 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 12 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 13 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 14 C -0.22 -12.01 8.64 22.49 0.19 -11.81 16 15 C -0.07 -3.60 9.96 21.98 0.22 -3.38 16 16 C -0.29 -13.30 9.36 22.54 0.21 -13.09 16 17 C 0.23 10.50 6.71 38.18 0.26 10.76 16 18 N -0.60 -22.10 6.66 -51.11 -0.34 -22.44 16 19 N -0.60 -17.23 9.60 37.02 0.36 -16.87 16 20 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 26 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 27 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.12 4.80 7.02 -2.91 -0.02 4.78 16 29 H 0.40 13.70 8.20 -215.49 -1.77 11.94 16 30 H 0.33 8.94 8.43 -210.56 -1.78 7.16 16 31 H 0.36 7.50 9.21 -210.55 -1.94 5.56 16 Total: -1.00 -63.41 267.41 -0.04 -63.45 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -4.31 Total: 36.59 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 2.77 Total: -42.65 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: 0.25 Total: -82.25 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.78 Total: -16.23 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -63.41 -0.04 -63.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306570251.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.543 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds