Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04042 * 2 1 4 4 C 1.35320 * 107.74892 * 179.97438 * 3 2 1 5 5 C 1.39870 * 107.91564 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.89274 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.54960 * 245.70075 * 6 5 4 8 8 C 1.55001 * 110.61614 * 122.82221 * 6 5 4 9 9 C 1.54980 * 102.01152 * 204.59410 * 8 6 5 10 10 C 1.54107 * 104.25335 * 20.66550 * 9 8 6 11 11 H 1.09003 * 109.88067 * 242.74118 * 10 9 8 12 12 C 1.50700 * 109.87765 * 121.58847 * 10 9 8 13 13 H 1.08003 * 120.00085 * 0.71878 * 12 10 9 14 14 C 1.37878 * 119.99964 * 180.71306 * 12 10 9 15 15 N 1.31515 * 120.00033 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99963 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47105 * 90.00457 * 16 14 12 18 18 H 1.48502 * 109.46951 * 209.99960 * 16 14 12 19 19 H 1.48498 * 109.47456 * 330.00204 * 16 14 12 20 20 O 1.43743 * 107.29060 * 2.16854 * 10 9 8 21 21 N 1.30834 * 108.20400 * 0.25866 * 5 4 3 22 22 H 1.09005 * 109.47085 * 89.99692 * 1 2 3 23 23 H 1.08996 * 109.47009 * 210.00192 * 1 2 3 24 24 H 1.08999 * 109.46609 * 330.00098 * 1 2 3 25 25 H 1.08001 * 126.12865 * 359.96949 * 3 2 1 26 26 H 1.08001 * 126.03934 * 179.97438 * 4 3 2 27 27 H 1.09004 * 110.90676 * 322.67439 * 8 6 5 28 28 H 1.08999 * 110.90490 * 86.27298 * 8 6 5 29 29 H 1.09003 * 110.34090 * 262.02665 * 9 8 6 30 30 H 1.08998 * 110.68935 * 139.47772 * 9 8 6 31 31 H 0.96994 * 120.00647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 3.5346 -0.7322 0.0003 6 6 4.7497 -1.6237 0.0003 7 1 4.8098 -2.1885 -0.9300 8 6 4.7245 -2.5808 1.2192 9 6 6.2286 -2.9035 1.4071 10 6 6.9566 -1.7499 0.6902 11 1 7.5397 -2.1408 -0.1436 12 6 7.8606 -1.0333 1.6599 13 1 7.9264 -1.3675 2.6848 14 6 8.6039 0.0489 1.2387 15 7 8.5236 0.4561 -0.0092 16 14 9.7250 0.9366 2.4405 17 1 11.0732 0.3148 2.4116 18 1 9.8311 2.3667 2.0546 19 1 9.1620 0.8342 3.8108 20 8 5.9500 -0.8473 0.2021 21 7 2.2891 -1.1328 -0.0060 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5138 25 1 1.9283 2.1193 -0.0005 26 1 4.4212 1.2962 0.0003 27 1 4.3226 -2.0790 2.0995 28 1 4.1556 -3.4828 0.9938 29 1 6.4727 -3.8576 0.9397 30 1 6.4896 -2.9204 2.4652 31 1 9.0461 1.2177 -0.3055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306582165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 34.929487 kcal Electronic energy + Delta-G solvation = -15039.900533 eV Core-core repulsion = 12516.354507 eV Total energy + Delta-G solvation = -2523.546026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72992 -37.89608 -33.30202 -32.34340 -30.85691 -29.74975 -28.68569 -26.24860 -24.24211 -21.76659 -20.82419 -19.74277 -18.97965 -16.88980 -16.47155 -15.38117 -14.90186 -14.52247 -14.09017 -13.74407 -13.37554 -12.89507 -12.85562 -12.29015 -12.23130 -12.06197 -11.49736 -10.89185 -10.72240 -10.54875 -10.41232 -10.02064 -9.97324 -9.78368 -9.10655 -8.83402 -8.50541 -8.10274 -7.91323 -5.95001 -4.07546 2.24339 2.80971 3.32448 3.34334 3.40930 3.44624 4.47020 4.62902 5.00270 5.12114 5.16256 5.36389 5.41401 5.54864 5.73048 5.82479 6.05052 6.19237 6.33940 6.43957 6.47866 6.68257 6.77532 6.87836 6.94071 7.12943 7.39332 7.60295 7.93954 8.14052 8.30170 8.60607 9.05774 9.62650 11.12372 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.007592 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.943728 B = 3687.421856 C = 4120.919785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.390 5.390 3 C 0.033 3.967 4 C -0.232 4.232 5 C 0.097 3.903 6 C 0.143 3.857 7 H 0.067 0.933 8 C -0.134 4.134 9 C -0.147 4.147 10 C 0.204 3.796 11 H 0.028 0.972 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.077 3.923 15 N -0.862 5.862 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 O -0.339 6.339 21 N -0.303 5.303 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.169 0.831 26 H 0.155 0.845 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -0.261 -0.101 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.173 5.173 3 C -0.112 4.112 4 C -0.261 4.261 5 C -0.069 4.069 6 C 0.083 3.917 7 H 0.085 0.915 8 C -0.172 4.172 9 C -0.185 4.185 10 C 0.148 3.852 11 H 0.046 0.954 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 O -0.258 6.258 21 N -0.126 5.126 22 H 0.086 0.914 23 H 0.102 0.898 24 H 0.100 0.900 25 H 0.186 0.814 26 H 0.173 0.827 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.679 -0.877 -0.282 13.710 hybrid contribution 0.959 1.196 0.624 1.655 sum -12.720 0.319 0.342 12.729 Atomic orbital electron populations 1.21692 0.75102 1.03875 1.02678 1.48410 1.06034 1.03968 1.58905 1.22469 0.91380 0.93059 1.04257 1.21543 0.96780 0.94976 1.12810 1.22246 0.92439 0.94587 0.97636 1.20981 0.84316 0.89363 0.97090 0.91539 1.22995 0.97433 0.98494 0.98285 1.23104 0.93837 0.99522 1.02009 1.20331 0.86020 0.86004 0.92797 0.95391 1.21180 1.23376 1.15775 0.96509 0.91956 1.25078 0.96049 0.96706 0.94988 1.70039 1.39291 1.25213 1.15319 0.86645 0.80922 0.79041 0.81629 1.20584 1.21129 1.19812 1.89292 1.17691 1.32759 1.86023 1.77191 1.01208 1.07501 1.26739 0.91413 0.89782 0.90003 0.81379 0.82695 0.91578 0.91845 0.92975 0.91348 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 11.47 59.85 0.69 1.73 16 2 N -0.39 -6.05 4.01 -68.16 -0.27 -6.32 16 3 C 0.03 0.51 11.49 -17.22 -0.20 0.31 16 4 C -0.23 -4.57 10.20 -40.01 -0.41 -4.98 16 5 C 0.10 2.02 6.47 -82.40 -0.53 1.49 16 6 C 0.14 3.16 3.90 -26.82 -0.10 3.05 16 7 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 8 C -0.13 -2.68 6.59 -24.63 -0.16 -2.85 16 9 C -0.15 -3.16 6.64 -25.11 -0.17 -3.32 16 10 C 0.20 5.37 3.26 -27.30 -0.09 5.28 16 11 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 12 C -0.53 -15.09 8.78 -34.44 -0.30 -15.39 16 13 H 0.06 1.72 7.33 -52.48 -0.38 1.33 16 14 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 15 N -0.86 -25.76 12.92 55.43 0.72 -25.05 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 O -0.34 -9.02 9.84 -35.23 -0.35 -9.36 16 21 N -0.30 -5.79 12.58 33.67 0.42 -5.36 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 26 H 0.16 3.27 7.98 -52.49 -0.42 2.85 16 27 H 0.07 1.36 8.05 -51.93 -0.42 0.95 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.46 7.40 -51.93 -0.38 1.07 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -33.07 268.53 -5.95 -39.02 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.12 Total: -0.94 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.37 Total: -12.56 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.87 Total: -36.73 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.35 Total: -9.36 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.07 -5.95 -39.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306582165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.951 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds