Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34947 * 126.04042 * 2 1 4 4 C 1.35320 * 107.74892 * 179.97438 * 3 2 1 5 5 C 1.39870 * 107.91564 * 0.02562 * 4 3 2 6 6 C 1.50706 * 125.89274 * 179.97438 * 5 4 3 7 7 H 1.09000 * 110.54960 * 245.70075 * 6 5 4 8 8 C 1.55001 * 110.61614 * 122.82221 * 6 5 4 9 9 C 1.54980 * 102.01152 * 204.59410 * 8 6 5 10 10 C 1.54107 * 104.25335 * 20.66550 * 9 8 6 11 11 H 1.09003 * 109.88067 * 242.74118 * 10 9 8 12 12 C 1.50700 * 109.87765 * 121.58847 * 10 9 8 13 13 H 1.08003 * 120.00085 * 0.71878 * 12 10 9 14 14 C 1.37878 * 119.99964 * 180.71306 * 12 10 9 15 15 N 1.31515 * 120.00033 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99963 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47105 * 90.00457 * 16 14 12 18 18 H 1.48502 * 109.46951 * 209.99960 * 16 14 12 19 19 H 1.48498 * 109.47456 * 330.00204 * 16 14 12 20 20 O 1.43743 * 107.29060 * 2.16854 * 10 9 8 21 21 N 1.30834 * 108.20400 * 0.25866 * 5 4 3 22 22 H 1.09005 * 109.47085 * 89.99692 * 1 2 3 23 23 H 1.08996 * 109.47009 * 210.00192 * 1 2 3 24 24 H 1.08999 * 109.46609 * 330.00098 * 1 2 3 25 25 H 1.08001 * 126.12865 * 359.96949 * 3 2 1 26 26 H 1.08001 * 126.03934 * 179.97438 * 4 3 2 27 27 H 1.09004 * 110.90676 * 322.67439 * 8 6 5 28 28 H 1.08999 * 110.90490 * 86.27298 * 8 6 5 29 29 H 1.09003 * 110.34090 * 262.02665 * 9 8 6 30 30 H 1.08998 * 110.68935 * 139.47772 * 9 8 6 31 31 H 0.96994 * 120.00647 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 3.5346 -0.7322 0.0003 6 6 4.7497 -1.6237 0.0003 7 1 4.8098 -2.1885 -0.9300 8 6 4.7245 -2.5808 1.2192 9 6 6.2286 -2.9035 1.4071 10 6 6.9566 -1.7499 0.6902 11 1 7.5397 -2.1408 -0.1436 12 6 7.8606 -1.0333 1.6599 13 1 7.9264 -1.3675 2.6848 14 6 8.6039 0.0489 1.2387 15 7 8.5236 0.4561 -0.0092 16 14 9.7250 0.9366 2.4405 17 1 11.0732 0.3148 2.4116 18 1 9.8311 2.3667 2.0546 19 1 9.1620 0.8342 3.8108 20 8 5.9500 -0.8473 0.2021 21 7 2.2891 -1.1328 -0.0060 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3632 0.8900 0.5138 25 1 1.9283 2.1193 -0.0005 26 1 4.4212 1.2962 0.0003 27 1 4.3226 -2.0790 2.0995 28 1 4.1556 -3.4828 0.9938 29 1 6.4727 -3.8576 0.9397 30 1 6.4896 -2.9204 2.4652 31 1 9.0461 1.2177 -0.3055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306582165.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 12.244052 kcal Electronic energy + Delta-G solvation = -15040.884247 eV Core-core repulsion = 12516.354507 eV Total energy + Delta-G solvation = -2524.529740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09051 -39.73740 -34.94084 -34.09776 -32.66047 -31.17498 -30.37188 -27.73177 -25.96924 -23.49945 -22.26763 -21.43727 -20.49820 -18.84290 -17.86998 -17.02210 -16.54283 -16.15302 -15.85591 -15.50337 -14.67576 -14.43980 -14.24578 -14.07034 -13.52806 -13.32288 -13.15497 -12.79691 -12.46861 -12.26662 -12.16664 -11.98793 -11.63031 -11.45831 -11.04736 -10.69405 -10.23861 -9.90395 -9.42930 -8.11468 -6.32326 0.92809 1.42283 1.44016 1.54869 1.68293 1.83070 2.43456 3.02308 3.40127 3.76458 3.97907 4.06109 4.14238 4.21945 4.49340 4.50874 4.58870 4.71441 4.72989 4.81724 4.97453 5.04124 5.09348 5.21269 5.26082 5.53062 5.65669 5.76060 6.19602 6.22826 6.53244 6.75188 6.99491 7.42970 8.96734 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.007592 C = 0.006793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.943728 B = 3687.421856 C = 4120.919785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.379 5.379 3 C 0.067 3.933 4 C -0.282 4.282 5 C 0.071 3.929 6 C 0.136 3.864 7 H 0.066 0.934 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.194 3.806 11 H -0.003 1.003 12 C -0.553 4.553 13 H 0.065 0.935 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.962 3.038 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.266 1.266 20 O -0.370 6.370 21 N -0.319 5.319 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.119 0.881 25 H 0.220 0.780 26 H 0.126 0.874 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 0.173 0.895 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.162 5.162 3 C -0.080 4.080 4 C -0.312 4.312 5 C -0.093 4.093 6 C 0.076 3.924 7 H 0.084 0.916 8 C -0.156 4.156 9 C -0.176 4.176 10 C 0.139 3.861 11 H 0.014 0.986 12 C -0.591 4.591 13 H 0.083 0.917 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.786 3.214 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.191 1.191 20 O -0.289 6.289 21 N -0.144 5.144 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.138 0.862 25 H 0.236 0.764 26 H 0.144 0.856 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.764 -0.478 0.720 15.788 hybrid contribution 1.426 1.075 0.248 1.803 sum -14.338 0.597 0.968 14.383 Atomic orbital electron populations 1.22236 0.71329 1.06127 1.04736 1.48895 1.07982 1.02971 1.56322 1.23009 0.89655 0.94981 1.00338 1.21484 0.98074 0.94628 1.16976 1.22046 0.92664 0.94929 0.99711 1.21100 0.83619 0.89833 0.97887 0.91595 1.22898 0.96598 0.99089 0.97048 1.22990 0.94245 0.98709 1.01610 1.20271 0.86517 0.87429 0.91927 0.98582 1.21591 1.24215 1.16268 0.96985 0.91659 1.25974 0.97653 0.97551 0.96775 1.70185 1.40492 1.25834 1.17365 0.85518 0.79026 0.77603 0.79206 1.19343 1.20826 1.19066 1.89212 1.19380 1.34036 1.86275 1.77084 1.00640 1.09357 1.27338 0.89388 0.89172 0.86227 0.76380 0.85593 0.92298 0.88782 0.90556 0.91170 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 11.47 127.77 1.47 2.87 16 2 N -0.38 -10.63 4.01 -369.56 -1.48 -12.12 16 3 C 0.07 1.91 11.49 83.54 0.96 2.87 16 4 C -0.28 -11.29 10.20 21.99 0.22 -11.07 16 5 C 0.07 3.00 6.47 43.10 0.28 3.28 16 6 C 0.14 6.15 3.90 30.53 0.12 6.27 16 7 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 8 C -0.12 -4.70 6.59 31.96 0.21 -4.49 16 9 C -0.14 -5.93 6.64 31.65 0.21 -5.72 16 10 C 0.19 10.63 3.26 30.22 0.10 10.73 16 11 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 12 C -0.55 -32.28 8.78 25.60 0.22 -32.05 16 13 H 0.07 3.65 7.33 -2.91 -0.02 3.63 16 14 C 0.02 1.32 5.41 84.65 0.46 1.77 16 15 N -0.90 -55.83 12.92 21.45 0.28 -55.55 16 16 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 O -0.37 -20.64 9.84 -148.98 -1.47 -22.11 16 21 N -0.32 -11.81 12.58 -47.38 -0.60 -12.40 16 22 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 26 H 0.13 5.67 7.98 -2.91 -0.02 5.65 16 27 H 0.06 2.41 8.05 -2.38 -0.02 2.39 16 28 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 30 H 0.07 2.96 7.40 -2.39 -0.02 2.95 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -74.96 268.53 4.12 -70.84 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.11 Total: 9.93 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: 4.25 Total: -25.54 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -1.80 Total: -80.07 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.47 Total: -22.11 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -74.96 4.12 -70.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306582165.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.082 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds