Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.90092 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.86856 * 3.98538 * 6 5 4 8 8 C 1.54093 * 109.88475 * 124.99492 * 6 5 4 9 9 C 1.54813 * 104.19142 * 121.45160 * 8 6 5 10 10 C 1.55002 * 102.08803 * 20.88209 * 9 8 6 11 11 H 1.09000 * 110.61795 * 81.63362 * 10 9 8 12 12 C 1.50705 * 110.61703 * 204.47490 * 10 9 8 13 13 H 1.08003 * 119.99569 * 0.02562 * 12 10 9 14 14 C 1.37870 * 119.99872 * 180.02562 * 12 10 9 15 15 N 1.31515 * 120.00158 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 120.00256 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47012 * 90.00020 * 16 14 12 18 18 H 1.48494 * 109.47226 * 209.99969 * 16 14 12 19 19 H 1.48501 * 109.46904 * 330.00119 * 16 14 12 20 20 O 1.43747 * 109.87695 * 242.82754 * 6 5 4 21 21 N 1.30841 * 108.19911 * 359.73793 * 5 4 3 22 22 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 24 24 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 25 25 H 1.08004 * 126.13243 * 359.96418 * 3 2 1 26 26 H 1.07998 * 126.03711 * 180.02562 * 4 3 2 27 27 H 1.08997 * 110.49026 * 240.12877 * 8 6 5 28 28 H 1.09006 * 110.48676 * 2.77764 * 8 6 5 29 29 H 1.08992 * 110.90796 * 139.07727 * 9 8 6 30 30 H 1.09002 * 110.90764 * 262.65448 * 9 8 6 31 31 H 0.96990 * 120.00379 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7496 -1.6236 0.0014 7 1 5.6533 -1.0183 0.0736 8 6 4.6794 -2.6039 1.1882 9 6 4.7266 -4.0034 0.5279 10 6 5.3532 -3.6890 -0.8545 11 1 6.4381 -3.6174 -0.7769 12 6 4.9631 -4.7372 -1.8647 13 1 4.3279 -5.5599 -1.5712 14 6 5.4170 -4.6458 -3.1633 15 7 5.0762 -5.5602 -4.0449 16 14 6.5150 -3.2224 -3.6709 17 1 7.9372 -3.5957 -3.4629 18 1 6.2899 -2.9106 -5.1052 19 1 6.1909 -2.0294 -2.8482 20 8 4.7796 -2.4103 -1.2014 21 7 2.2891 -1.1327 0.0053 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8901 0.5138 25 1 1.9282 2.1194 -0.0005 26 1 4.4211 1.2963 0.0011 27 1 5.5350 -2.4649 1.8490 28 1 3.7469 -2.4723 1.7371 29 1 5.3620 -4.6811 1.0979 30 1 3.7235 -4.4149 0.4164 31 1 5.3952 -5.4957 -4.9586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306582166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = 38.651615 kcal Electronic energy + Delta-G solvation = -15144.602114 eV Core-core repulsion = 12621.217492 eV Total energy + Delta-G solvation = -2523.384622 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90020 -38.18694 -33.38502 -32.38057 -31.04847 -29.93220 -29.13383 -26.54754 -24.33160 -21.66327 -20.86282 -20.14467 -19.08088 -17.03132 -16.63350 -15.41656 -15.25725 -14.79644 -14.25769 -13.83493 -13.42444 -13.01102 -12.69163 -12.53805 -12.43733 -12.40221 -11.76682 -10.91860 -10.82924 -10.70727 -10.27502 -10.09288 -9.77318 -9.63309 -9.40793 -8.91267 -8.51390 -8.34962 -8.27449 -6.04695 -4.11965 2.14069 2.74312 3.05962 3.42355 3.49900 3.73131 4.58312 4.63282 4.86928 4.99724 5.15402 5.24008 5.39867 5.43539 5.51236 5.63302 5.77862 5.95198 6.05438 6.24227 6.27330 6.38130 6.53617 6.75649 6.75888 6.92886 7.22143 7.25211 7.67861 8.07561 8.28313 8.52357 8.97933 9.59193 11.06082 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.008531 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.984119 B = 3281.398470 C = 3403.491161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.385 5.385 3 C 0.042 3.958 4 C -0.266 4.266 5 C 0.087 3.913 6 C 0.146 3.854 7 H 0.070 0.930 8 C -0.145 4.145 9 C -0.132 4.132 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.513 4.513 13 H 0.079 0.921 14 C 0.082 3.918 15 N -0.893 5.893 16 Si 0.871 3.129 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.231 1.231 20 O -0.363 6.363 21 N -0.266 5.266 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.145 0.855 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 13.636 10.017 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.168 5.168 3 C -0.104 4.104 4 C -0.295 4.295 5 C -0.080 4.080 6 C 0.085 3.915 7 H 0.088 0.912 8 C -0.183 4.183 9 C -0.170 4.170 10 C 0.114 3.886 11 H 0.046 0.954 12 C -0.550 4.550 13 H 0.097 0.903 14 C -0.122 4.122 15 N -0.530 5.530 16 Si 0.698 3.302 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.154 1.154 20 O -0.282 6.282 21 N -0.089 5.089 22 H 0.090 0.910 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.186 0.814 26 H 0.162 0.838 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.921 12.653 9.633 16.969 hybrid contribution 0.965 1.461 -0.323 1.780 sum -4.957 14.114 9.311 17.620 Atomic orbital electron populations 1.21768 0.74778 1.03971 1.03189 1.48632 1.06505 1.04132 1.57483 1.22400 0.91249 0.93248 1.03458 1.21386 0.96902 0.94475 1.16772 1.22455 0.93400 0.93496 0.98688 1.20862 0.90500 0.91621 0.88515 0.91189 1.22944 1.01619 0.96374 0.97375 1.22988 1.01996 0.94704 0.97274 1.21168 0.92817 0.81780 0.92835 0.95390 1.20931 1.32981 1.06887 0.94191 0.90295 1.25065 0.95400 0.95466 0.96250 1.69921 1.44647 1.34584 1.03877 0.86933 0.79876 0.85288 0.78146 1.20931 1.21717 1.15356 1.89356 1.83887 1.27850 1.27136 1.77496 1.01499 1.06559 1.23311 0.90972 0.89961 0.89423 0.81358 0.83772 0.91606 0.91369 0.91769 0.91023 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 11.47 59.85 0.69 1.74 16 2 N -0.38 -5.89 4.01 -68.16 -0.27 -6.16 16 3 C 0.04 0.56 11.49 -17.22 -0.20 0.37 16 4 C -0.27 -4.21 10.73 -40.01 -0.43 -4.64 16 5 C 0.09 1.70 5.97 -82.41 -0.49 1.20 16 6 C 0.15 2.97 3.93 -27.31 -0.11 2.86 16 7 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 8 C -0.14 -2.65 6.62 -25.20 -0.17 -2.82 16 9 C -0.13 -2.80 6.55 -24.72 -0.16 -2.96 16 10 C 0.17 4.27 2.52 -26.82 -0.07 4.20 16 11 H 0.03 0.69 7.46 -51.93 -0.39 0.31 16 12 C -0.51 -15.26 9.39 -34.44 -0.32 -15.59 16 13 H 0.08 2.50 8.01 -52.48 -0.42 2.08 16 14 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 15 N -0.89 -28.28 13.96 55.43 0.77 -27.50 16 16 Si 0.87 22.77 27.06 -169.99 -4.60 18.17 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 19 H -0.23 -5.94 5.63 56.52 0.32 -5.62 16 20 O -0.36 -9.26 8.39 -35.23 -0.30 -9.56 16 21 N -0.27 -5.33 12.39 33.67 0.42 -4.91 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.22 7.56 -51.93 -0.39 0.83 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.62 8.04 -51.93 -0.42 1.20 16 31 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 264.13 15.07 3.98 3.98 Total: -1.00 -35.72 264.13 -5.57 -41.29 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -4.22 Total: -2.06 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.36 Total: -13.24 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.92 Total: -38.58 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.30 Total: -9.56 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.60 Total: 18.17 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.72 -5.57 -41.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306582166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.945 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds