Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03675 * 2 1 4 4 C 1.35323 * 107.74537 * 179.97438 * 3 2 1 5 5 C 1.39866 * 107.92159 * 0.02562 * 4 3 2 6 6 C 1.50695 * 125.90092 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.86856 * 3.98538 * 6 5 4 8 8 C 1.54093 * 109.88475 * 124.99492 * 6 5 4 9 9 C 1.54813 * 104.19142 * 121.45160 * 8 6 5 10 10 C 1.55002 * 102.08803 * 20.88209 * 9 8 6 11 11 H 1.09000 * 110.61795 * 81.63362 * 10 9 8 12 12 C 1.50705 * 110.61703 * 204.47490 * 10 9 8 13 13 H 1.08003 * 119.99569 * 0.02562 * 12 10 9 14 14 C 1.37870 * 119.99872 * 180.02562 * 12 10 9 15 15 N 1.31515 * 120.00158 * 180.02562 * 14 12 10 16 16 Si 1.86803 * 120.00256 * 359.97438 * 14 12 10 17 17 H 1.48499 * 109.47012 * 90.00020 * 16 14 12 18 18 H 1.48494 * 109.47226 * 209.99969 * 16 14 12 19 19 H 1.48501 * 109.46904 * 330.00119 * 16 14 12 20 20 O 1.43747 * 109.87695 * 242.82754 * 6 5 4 21 21 N 1.30841 * 108.19911 * 359.73793 * 5 4 3 22 22 H 1.09002 * 109.47391 * 89.99464 * 1 2 3 23 23 H 1.09001 * 109.46813 * 329.99520 * 1 2 3 24 24 H 1.09004 * 109.47041 * 209.99647 * 1 2 3 25 25 H 1.08004 * 126.13243 * 359.96418 * 3 2 1 26 26 H 1.07998 * 126.03711 * 180.02562 * 4 3 2 27 27 H 1.08997 * 110.49026 * 240.12877 * 8 6 5 28 28 H 1.09006 * 110.48676 * 2.77764 * 8 6 5 29 29 H 1.08992 * 110.90796 * 139.07727 * 9 8 6 30 30 H 1.09002 * 110.90764 * 262.65448 * 9 8 6 31 31 H 0.96990 * 120.00379 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 3.5347 -0.7321 0.0003 6 6 4.7496 -1.6236 0.0014 7 1 5.6533 -1.0183 0.0736 8 6 4.6794 -2.6039 1.1882 9 6 4.7266 -4.0034 0.5279 10 6 5.3532 -3.6890 -0.8545 11 1 6.4381 -3.6174 -0.7769 12 6 4.9631 -4.7372 -1.8647 13 1 4.3279 -5.5599 -1.5712 14 6 5.4170 -4.6458 -3.1633 15 7 5.0762 -5.5602 -4.0449 16 14 6.5150 -3.2224 -3.6709 17 1 7.9372 -3.5957 -3.4629 18 1 6.2899 -2.9106 -5.1052 19 1 6.1909 -2.0294 -2.8482 20 8 4.7796 -2.4103 -1.2014 21 7 2.2891 -1.1327 0.0053 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3633 0.8900 0.5139 24 1 -0.3633 -0.8901 0.5138 25 1 1.9282 2.1194 -0.0005 26 1 4.4211 1.2963 0.0011 27 1 5.5350 -2.4649 1.8490 28 1 3.7469 -2.4723 1.7371 29 1 5.3620 -4.6811 1.0979 30 1 3.7235 -4.4149 0.4164 31 1 5.3952 -5.4957 -4.9586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306582166.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = 12.674875 kcal Electronic energy + Delta-G solvation = -15145.728550 eV Core-core repulsion = 12621.217492 eV Total energy + Delta-G solvation = -2524.511058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09114 -39.90853 -34.98656 -34.20588 -32.74317 -31.27284 -30.68343 -27.99455 -25.95142 -23.24026 -22.05609 -21.92610 -20.44940 -19.07858 -17.92468 -17.16572 -16.60293 -16.31063 -15.96225 -15.34206 -14.75467 -14.60715 -14.35076 -14.13725 -13.68141 -13.49720 -13.18937 -12.84723 -12.55671 -12.25920 -12.10792 -11.74060 -11.53521 -11.45407 -11.29017 -10.78410 -10.28285 -10.10566 -9.45248 -8.36507 -6.49318 1.00284 1.35159 1.39062 1.66406 1.74166 1.82385 2.41353 2.93995 3.55749 3.72020 3.83715 3.99637 4.13196 4.20834 4.43166 4.44668 4.45512 4.63809 4.69250 4.83375 4.91853 4.99546 5.00950 5.10774 5.28631 5.41737 5.52496 5.68506 6.20063 6.26594 6.41359 6.67461 6.86327 7.26224 8.78227 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.032400 B = 0.008531 C = 0.008225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.984119 B = 3281.398470 C = 3403.491161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.386 5.386 3 C 0.063 3.937 4 C -0.286 4.286 5 C 0.058 3.942 6 C 0.134 3.866 7 H 0.096 0.904 8 C -0.129 4.129 9 C -0.129 4.129 10 C 0.168 3.832 11 H 0.042 0.958 12 C -0.528 4.528 13 H 0.036 0.964 14 C 0.023 3.977 15 N -0.941 5.941 16 Si 0.941 3.059 17 H -0.263 1.263 18 H -0.292 1.292 19 H -0.223 1.223 20 O -0.395 6.395 21 N -0.327 5.327 22 H 0.078 0.922 23 H 0.128 0.872 24 H 0.081 0.919 25 H 0.223 0.777 26 H 0.166 0.834 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 17.036 11.313 20.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.169 5.169 3 C -0.083 4.083 4 C -0.316 4.316 5 C -0.108 4.108 6 C 0.074 3.926 7 H 0.113 0.887 8 C -0.167 4.167 9 C -0.167 4.167 10 C 0.112 3.888 11 H 0.060 0.940 12 C -0.565 4.565 13 H 0.054 0.946 14 C -0.176 4.176 15 N -0.580 5.580 16 Si 0.764 3.236 17 H -0.188 1.188 18 H -0.218 1.218 19 H -0.146 1.146 20 O -0.315 6.315 21 N -0.151 5.151 22 H 0.096 0.904 23 H 0.146 0.854 24 H 0.100 0.900 25 H 0.239 0.761 26 H 0.184 0.816 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.471 16.042 10.955 20.182 hybrid contribution 0.646 0.425 -0.672 1.025 sum -4.825 16.468 10.283 20.005 Atomic orbital electron populations 1.22170 0.72223 1.05984 1.04220 1.49012 1.08033 1.03592 1.56275 1.23209 0.90204 0.94820 1.00098 1.21740 0.98994 0.93086 1.17741 1.22513 0.92975 0.95113 1.00158 1.21206 0.92465 0.91871 0.87019 0.88660 1.22872 1.03331 0.93416 0.97081 1.22899 1.00519 0.97195 0.96071 1.21034 0.93539 0.81059 0.93119 0.94032 1.21226 1.32055 1.07540 0.95693 0.94567 1.26023 0.97094 0.98284 0.96220 1.70058 1.46643 1.36867 1.04474 0.85852 0.78582 0.81764 0.77412 1.18808 1.21847 1.14563 1.89224 1.84192 1.27976 1.30147 1.77369 1.02589 1.09676 1.25477 0.90394 0.85416 0.90017 0.76053 0.81603 0.87788 0.91376 0.89453 0.93830 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 11.47 127.77 1.47 3.10 16 2 N -0.39 -10.90 4.01 -369.55 -1.48 -12.38 16 3 C 0.06 1.44 11.49 83.54 0.96 2.40 16 4 C -0.29 -8.22 10.73 21.99 0.24 -7.98 16 5 C 0.06 2.18 5.97 43.10 0.26 2.44 16 6 C 0.13 5.24 3.93 30.22 0.12 5.36 16 7 H 0.10 3.17 8.13 -2.39 -0.02 3.16 16 8 C -0.13 -4.49 6.62 31.58 0.21 -4.28 16 9 C -0.13 -5.47 6.55 31.90 0.21 -5.26 16 10 C 0.17 8.48 2.52 30.53 0.08 8.56 16 11 H 0.04 1.99 7.46 -2.39 -0.02 1.97 16 12 C -0.53 -32.63 9.39 25.60 0.24 -32.38 16 13 H 0.04 2.45 8.01 -2.91 -0.02 2.43 16 14 C 0.02 1.43 5.47 84.65 0.46 1.89 16 15 N -0.94 -61.76 13.96 21.44 0.30 -61.46 16 16 Si 0.94 47.53 27.06 68.60 1.86 49.38 16 17 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 19 H -0.22 -10.93 5.63 99.48 0.56 -10.37 16 20 O -0.40 -20.03 8.39 -148.98 -1.25 -21.28 16 21 N -0.33 -12.92 12.39 -47.39 -0.59 -13.51 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 26 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 27 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 2.37 7.56 -2.38 -0.02 2.35 16 29 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.04 2.04 8.04 -2.39 -0.02 2.02 16 31 H 0.27 16.37 8.31 -92.72 -0.77 15.60 16 Total: -1.00 -81.82 264.13 4.03 -77.79 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.96 Total: 7.61 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 4.24 Total: -26.15 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.77 Total: -87.35 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.25 Total: -21.28 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.86 Total: 49.38 kcal Total: -81.82 4.03 -77.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306582166.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.464 kcal (2) G-P(sol) polarization free energy of solvation -81.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds