Wall clock time and date at job start Mon Mar 30 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34950 * 126.03804 * 2 1 4 4 C 1.35322 * 107.74378 * 179.75148 * 3 2 1 5 5 C 1.39874 * 107.92279 * 0.39072 * 4 3 2 6 6 C 1.50689 * 125.89968 * 179.86312 * 5 4 3 7 7 H 1.09003 * 110.35651 * 244.02927 * 6 5 4 8 8 C 1.54947 * 110.31190 * 121.88694 * 6 5 4 9 9 C 1.55310 * 100.94399 * 204.64144 * 8 6 5 10 10 C 1.54376 * 102.25097 * 34.13221 * 9 8 6 11 11 H 1.09005 * 109.90820 * 98.20110 * 10 9 8 12 12 C 1.50702 * 109.82728 * 219.12824 * 10 9 8 13 13 H 1.08002 * 120.00299 * 359.59348 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.30907 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 O 1.43235 * 107.59255 * 338.64306 * 10 9 8 21 21 N 1.30837 * 108.20007 * 359.60560 * 5 4 3 22 22 H 1.09001 * 109.47045 * 270.02678 * 1 2 3 23 23 H 1.09000 * 109.47168 * 30.02520 * 1 2 3 24 24 H 1.09003 * 109.47183 * 150.02129 * 1 2 3 25 25 H 1.07992 * 126.12992 * 359.97438 * 3 2 1 26 26 H 1.07997 * 126.03902 * 180.27857 * 4 3 2 27 27 H 1.09007 * 111.12103 * 322.56168 * 8 6 5 28 28 H 1.08995 * 111.12711 * 86.67950 * 8 6 5 29 29 H 1.08996 * 110.84239 * 275.94186 * 9 8 6 30 30 H 1.09001 * 110.84550 * 152.32144 * 9 8 6 31 31 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0056 5 6 3.5346 -0.7322 0.0001 6 6 4.7496 -1.6237 0.0005 7 1 4.7935 -2.2052 -0.9204 8 6 4.7251 -2.5656 1.2306 9 6 6.2383 -2.8734 1.3964 10 6 6.8925 -1.5447 0.9608 11 1 7.1448 -0.9498 1.8387 12 6 8.1374 -1.8264 0.1595 13 1 8.4443 -2.8460 -0.0209 14 6 8.8813 -0.7824 -0.3483 15 7 8.5075 0.4592 -0.1287 16 14 10.4201 -1.1317 -1.3481 17 1 10.6211 -2.5994 -1.4506 18 1 10.2673 -0.5572 -2.7089 19 1 11.5948 -0.5162 -0.6800 20 8 5.9435 -0.8394 0.1524 21 7 2.2891 -1.1328 0.0000 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3634 -0.8902 -0.5135 25 1 1.9282 2.1193 -0.0004 26 1 4.4211 1.2962 0.0113 27 1 4.3295 -2.0549 2.1086 28 1 4.1598 -3.4732 1.0192 29 1 6.5424 -3.6889 0.7403 30 1 6.4763 -3.1006 2.4355 31 1 9.0311 1.1937 -0.4857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306582167.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:25 Heat of formation + Delta-G solvation = 11.839916 kcal Electronic energy + Delta-G solvation = -15019.522500 eV Core-core repulsion = 12494.975235 eV Total energy + Delta-G solvation = -2524.547265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08360 -39.75667 -34.92507 -34.07351 -32.68234 -31.16708 -30.36997 -27.72121 -26.02325 -23.28535 -22.34938 -21.53283 -20.50148 -18.57379 -17.95807 -17.19226 -16.67253 -16.28174 -15.89853 -15.02296 -14.72751 -14.50262 -14.11904 -13.88128 -13.64861 -13.37417 -13.16672 -12.80010 -12.42193 -12.32121 -12.25986 -12.00551 -11.57506 -11.50982 -11.08447 -10.66446 -10.20501 -9.81084 -9.41676 -8.09076 -6.30884 0.93870 1.42092 1.43430 1.55841 1.69588 1.84219 2.44082 3.04183 3.40006 3.75386 3.92206 4.02981 4.14923 4.25032 4.49423 4.56125 4.60505 4.72293 4.76411 4.81451 4.93042 5.03000 5.10596 5.20102 5.23286 5.62968 5.67470 5.78471 6.21612 6.23888 6.59144 6.76882 7.06213 7.45883 8.98291 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046296 B = 0.007102 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.660745 B = 3941.488174 C = 4330.791213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.380 5.380 3 C 0.066 3.934 4 C -0.282 4.282 5 C 0.065 3.935 6 C 0.147 3.853 7 H 0.062 0.938 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.197 3.803 11 H 0.005 0.995 12 C -0.563 4.563 13 H 0.064 0.936 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.960 3.040 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.275 1.275 20 O -0.376 6.376 21 N -0.320 5.320 22 H 0.087 0.913 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.220 0.780 26 H 0.127 0.873 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.837 -0.208 0.788 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.163 5.163 3 C -0.080 4.080 4 C -0.312 4.312 5 C -0.100 4.100 6 C 0.086 3.914 7 H 0.079 0.921 8 C -0.161 4.161 9 C -0.173 4.173 10 C 0.142 3.858 11 H 0.023 0.977 12 C -0.601 4.601 13 H 0.082 0.918 14 C -0.179 4.179 15 N -0.539 5.539 16 Si 0.785 3.215 17 H -0.186 1.186 18 H -0.208 1.208 19 H -0.201 1.201 20 O -0.295 6.295 21 N -0.145 5.145 22 H 0.106 0.894 23 H 0.138 0.862 24 H 0.108 0.892 25 H 0.236 0.764 26 H 0.146 0.854 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.722 -0.822 0.684 15.759 hybrid contribution 1.564 0.718 -0.433 1.774 sum -14.159 -0.104 0.251 14.161 Atomic orbital electron populations 1.22227 0.71402 1.06096 1.04706 1.48910 1.07973 1.03016 1.56359 1.23017 0.89689 0.94962 1.00355 1.21497 0.98080 0.94607 1.17004 1.22337 0.92877 0.95152 0.99634 1.20876 0.82913 0.89476 0.98119 0.92065 1.23044 0.96816 0.99377 0.96843 1.23107 0.93863 0.98442 1.01872 1.20254 0.87379 0.88415 0.89793 0.97699 1.21855 1.08850 0.93073 1.36303 0.91766 1.25956 1.00555 0.94830 0.96575 1.70198 1.39610 0.99206 1.44866 0.85499 0.79012 0.78786 0.78214 1.18567 1.20824 1.20099 1.88698 1.24069 1.43898 1.72867 1.77095 1.00722 1.09364 1.27359 0.89432 0.86231 0.89218 0.76385 0.85450 0.91610 0.88647 0.90914 0.90101 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 11.47 127.77 1.47 2.87 16 2 N -0.38 -10.61 4.01 -369.58 -1.48 -12.09 16 3 C 0.07 1.87 11.49 83.54 0.96 2.83 16 4 C -0.28 -11.18 10.18 21.99 0.22 -10.96 16 5 C 0.06 2.72 6.45 43.10 0.28 2.99 16 6 C 0.15 6.67 4.00 30.51 0.12 6.79 16 7 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 8 C -0.12 -4.77 6.56 32.05 0.21 -4.56 16 9 C -0.14 -5.74 6.53 31.85 0.21 -5.53 16 10 C 0.20 10.74 3.36 30.32 0.10 10.84 16 11 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 12 C -0.56 -32.67 8.75 25.60 0.22 -32.44 16 13 H 0.06 3.56 7.52 -2.91 -0.02 3.54 16 14 C 0.02 1.33 5.41 84.66 0.46 1.79 16 15 N -0.90 -55.90 12.91 21.45 0.28 -55.62 16 16 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 O -0.38 -20.92 9.60 -148.98 -1.43 -22.35 16 21 N -0.32 -11.83 12.58 -47.39 -0.60 -12.43 16 22 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 26 H 0.13 5.65 7.95 -2.91 -0.02 5.63 16 27 H 0.07 2.53 8.05 -2.38 -0.02 2.51 16 28 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.07 2.99 7.66 -2.39 -0.02 2.97 16 30 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -74.82 268.70 4.15 -70.66 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.11 Total: 10.13 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.25 Total: -25.37 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.80 Total: -80.14 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.43 Total: -22.35 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.82 4.15 -70.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306582167.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.505 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds