Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.02222 * 2 1 4 4 C 1.54274 * 110.02912 * 121.43961 * 2 1 3 5 5 C 1.54890 * 104.19400 * 142.89352 * 4 2 1 6 6 C 1.54963 * 102.77999 * 322.08407 * 5 4 2 7 7 C 1.53880 * 110.03381 * 238.60182 * 2 1 3 8 8 H 1.09004 * 110.02714 * 121.38230 * 7 2 1 9 9 C 1.50691 * 110.03123 * 0.02562 * 7 2 1 10 10 N 1.30454 * 126.07644 * 300.66249 * 9 7 2 11 11 O 1.21274 * 110.68536 * 179.74511 * 10 9 7 12 12 C 1.34753 * 109.53776 * 0.43322 * 11 10 9 13 13 C 1.40333 * 126.79834 * 179.83990 * 12 11 10 14 14 H 1.08002 * 120.00385 * 179.69033 * 13 12 11 15 15 C 1.40467 * 119.99937 * 359.40800 * 13 12 11 16 16 N 1.30504 * 119.99895 * 0.27980 * 15 13 12 17 17 Si 1.86803 * 120.00067 * 180.27818 * 15 13 12 18 18 H 1.48498 * 109.46807 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46906 * 120.00349 * 17 15 13 20 20 H 1.48506 * 109.46902 * 240.00292 * 17 15 13 21 21 N 1.33329 * 106.40515 * 359.57829 * 12 11 10 22 22 H 1.09001 * 109.47221 * 181.39334 * 1 2 3 23 23 H 1.08998 * 109.46975 * 301.39687 * 1 2 3 24 24 H 1.08997 * 109.46387 * 61.39528 * 1 2 3 25 25 H 1.09002 * 110.48625 * 261.56785 * 4 2 1 26 26 H 1.08998 * 110.48848 * 24.21564 * 4 2 1 27 27 H 1.09007 * 110.75512 * 80.37180 * 5 4 2 28 28 H 1.09006 * 110.75626 * 203.74071 * 5 4 2 29 29 H 1.08996 * 110.47529 * 279.23573 * 6 5 4 30 30 H 1.09001 * 110.53005 * 156.56724 * 6 5 4 31 31 H 0.96996 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3136 -1.5011 0.7186 6 6 2.8882 -1.9404 -0.7053 7 6 2.0572 -0.7532 -1.2340 8 1 2.6861 -0.0944 -1.8329 9 6 0.9039 -1.2580 -2.0622 10 7 -0.0305 -2.0750 -1.6608 11 8 -0.8223 -2.2919 -2.5534 12 6 -0.4521 -1.6155 -3.6585 13 6 -1.1076 -1.6094 -4.8994 14 1 -0.7149 -1.0199 -5.7147 15 6 -2.2711 -2.3747 -5.0828 16 7 -2.7455 -3.0872 -4.0977 17 14 -3.1392 -2.3727 -6.7369 18 1 -2.4061 -1.4900 -7.6795 19 1 -3.1754 -3.7549 -7.2785 20 1 -4.5266 -1.8711 -6.5671 21 7 0.6570 -0.9486 -3.3379 22 1 -0.3634 -1.0274 0.0250 23 1 -0.3633 0.5354 0.8772 24 1 -0.3632 0.4920 -0.9022 25 1 2.3297 -0.0545 2.0255 26 1 1.3142 -1.4667 1.5961 27 1 4.1710 -0.8294 0.6749 28 1 3.5324 -2.3685 1.3415 29 1 2.2783 -2.8426 -0.6596 30 1 3.7644 -2.1024 -1.3331 31 1 -3.5492 -3.6154 -4.2242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306651789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = 31.307479 kcal Electronic energy + Delta-G solvation = -15360.753017 eV Core-core repulsion = 12837.049929 eV Total energy + Delta-G solvation = -2523.703088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.00008 -38.24475 -34.06462 -33.37799 -31.04283 -30.31650 -28.10211 -26.40730 -24.64454 -21.76558 -21.41823 -20.31120 -19.04842 -17.03023 -15.95674 -15.58578 -15.40049 -14.70785 -14.36979 -13.36794 -13.22147 -12.93219 -12.56310 -11.86619 -11.75006 -11.47464 -11.38722 -10.94581 -10.78876 -10.50048 -10.43914 -10.36049 -10.28228 -10.07825 -9.88594 -9.80106 -9.35566 -8.80576 -8.09407 -7.05017 -4.96183 2.79923 2.97775 3.05318 3.33335 3.75970 3.96335 4.87520 4.96541 4.97214 5.13047 5.39553 5.54076 5.66507 5.79118 5.84005 5.93809 5.95371 6.02706 6.15449 6.22056 6.39791 6.46042 6.51594 6.65654 6.69076 6.86833 6.91480 7.03517 7.55615 7.95777 8.17815 8.38469 8.52821 9.94451 10.47609 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.065134 B = 0.007029 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.780069 B = 3982.436701 C = 4054.976219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 H 0.067 0.933 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.009 3.991 8 H 0.083 0.917 9 C 0.174 3.826 10 N -0.465 5.465 11 O 0.041 5.959 12 C 0.302 3.698 13 C -0.418 4.418 14 H 0.111 0.889 15 C 0.071 3.929 16 N -0.765 5.765 17 Si 0.934 3.066 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.269 1.269 21 N -0.617 5.617 22 H 0.086 0.914 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 1.969 4.484 6.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.152 4.152 7 C -0.011 4.011 8 H 0.102 0.898 9 C -0.100 4.100 10 N -0.195 5.195 11 O -0.004 6.004 12 C 0.110 3.890 13 C -0.456 4.456 14 H 0.129 0.871 15 C -0.154 4.154 16 N -0.393 5.393 17 Si 0.757 3.243 18 H -0.179 1.179 19 H -0.194 1.194 20 H -0.194 1.194 21 N -0.360 5.360 22 H 0.105 0.895 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.390 1.769 5.210 7.039 hybrid contribution -0.621 -0.041 -0.925 1.115 sum 3.770 1.728 4.285 5.963 Atomic orbital electron populations 1.22192 0.94521 1.04049 0.99979 1.21662 0.96656 0.98266 0.93584 0.91429 1.22434 0.97294 0.98841 0.96877 1.22480 0.97539 0.99581 0.96354 1.22420 0.98968 0.98324 0.95483 1.19950 0.91511 0.96140 0.93494 0.89830 1.24638 0.97572 0.96665 0.91083 1.74218 1.06235 1.24247 1.14814 1.85530 1.41514 1.56787 1.16602 1.24195 0.88295 0.86204 0.90274 1.18584 1.07156 1.26089 0.93801 0.87094 1.26178 0.96553 0.92886 0.99736 1.69641 1.18745 1.18532 1.32352 0.85819 0.79084 0.79329 0.80069 1.17891 1.19393 1.19395 1.72243 1.18781 1.33212 1.11798 0.89540 0.94246 0.93379 0.92192 0.91333 0.91774 0.91833 0.90889 0.91879 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 7.75 37.16 0.29 -2.64 16 2 C -0.08 -1.42 3.50 -89.49 -0.31 -1.73 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.12 -1.70 6.36 -25.07 -0.16 -1.86 16 5 C -0.12 -1.66 6.91 -24.70 -0.17 -1.83 16 6 C -0.11 -1.94 6.36 -25.03 -0.16 -2.10 16 7 C 0.01 0.18 3.43 -90.66 -0.31 -0.13 16 8 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 9 C 0.17 4.35 5.11 -156.78 -0.80 3.55 16 10 N -0.46 -12.39 9.31 31.51 0.29 -12.10 16 11 O 0.04 1.20 9.74 15.13 0.15 1.35 16 12 C 0.30 8.66 7.82 -16.36 -0.13 8.53 16 13 C -0.42 -11.21 9.48 -37.95 -0.36 -11.57 16 14 H 0.11 2.82 7.85 -52.49 -0.41 2.41 16 15 C 0.07 1.74 5.50 -17.28 -0.10 1.64 16 16 N -0.77 -19.65 12.06 55.57 0.67 -18.98 16 17 Si 0.93 17.79 29.56 -169.99 -5.03 12.77 16 18 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 N -0.62 -17.14 11.61 -11.51 -0.13 -17.28 16 22 H 0.09 1.90 5.79 -51.93 -0.30 1.60 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.05 7.84 -51.93 -0.41 0.65 16 27 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.41 7.67 -51.93 -0.40 1.01 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 257.78 15.07 3.88 3.88 Total: -1.00 -29.46 257.78 -6.37 -35.83 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.00 Total: 2.65 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.21 Total: -8.13 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.83 Total: -48.35 kcal Atomic # 8 Polarization: 1.20 SS G_CDS: 0.15 Total: 1.35 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.46 -6.37 -35.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306651789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.140 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds