Wall clock time and date at job start Mon Mar 30 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.02222 * 2 1 4 4 C 1.54274 * 110.02912 * 121.43961 * 2 1 3 5 5 C 1.54890 * 104.19400 * 142.89352 * 4 2 1 6 6 C 1.54963 * 102.77999 * 322.08407 * 5 4 2 7 7 C 1.53880 * 110.03381 * 238.60182 * 2 1 3 8 8 H 1.09004 * 110.02714 * 121.38230 * 7 2 1 9 9 C 1.50691 * 110.03123 * 0.02562 * 7 2 1 10 10 N 1.30454 * 126.07644 * 300.66249 * 9 7 2 11 11 O 1.21274 * 110.68536 * 179.74511 * 10 9 7 12 12 C 1.34753 * 109.53776 * 0.43322 * 11 10 9 13 13 C 1.40333 * 126.79834 * 179.83990 * 12 11 10 14 14 H 1.08002 * 120.00385 * 179.69033 * 13 12 11 15 15 C 1.40467 * 119.99937 * 359.40800 * 13 12 11 16 16 N 1.30504 * 119.99895 * 0.27980 * 15 13 12 17 17 Si 1.86803 * 120.00067 * 180.27818 * 15 13 12 18 18 H 1.48498 * 109.46807 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.46906 * 120.00349 * 17 15 13 20 20 H 1.48506 * 109.46902 * 240.00292 * 17 15 13 21 21 N 1.33329 * 106.40515 * 359.57829 * 12 11 10 22 22 H 1.09001 * 109.47221 * 181.39334 * 1 2 3 23 23 H 1.08998 * 109.46975 * 301.39687 * 1 2 3 24 24 H 1.08997 * 109.46387 * 61.39528 * 1 2 3 25 25 H 1.09002 * 110.48625 * 261.56785 * 4 2 1 26 26 H 1.08998 * 110.48848 * 24.21564 * 4 2 1 27 27 H 1.09007 * 110.75512 * 80.37180 * 5 4 2 28 28 H 1.09006 * 110.75626 * 203.74071 * 5 4 2 29 29 H 1.08996 * 110.47529 * 279.23573 * 6 5 4 30 30 H 1.09001 * 110.53005 * 156.56724 * 6 5 4 31 31 H 0.96996 * 120.00230 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0584 -0.7560 1.2366 5 6 3.3136 -1.5011 0.7186 6 6 2.8882 -1.9404 -0.7053 7 6 2.0572 -0.7532 -1.2340 8 1 2.6861 -0.0944 -1.8329 9 6 0.9039 -1.2580 -2.0622 10 7 -0.0305 -2.0750 -1.6608 11 8 -0.8223 -2.2919 -2.5534 12 6 -0.4521 -1.6155 -3.6585 13 6 -1.1076 -1.6094 -4.8994 14 1 -0.7149 -1.0199 -5.7147 15 6 -2.2711 -2.3747 -5.0828 16 7 -2.7455 -3.0872 -4.0977 17 14 -3.1392 -2.3727 -6.7369 18 1 -2.4061 -1.4900 -7.6795 19 1 -3.1754 -3.7549 -7.2785 20 1 -4.5266 -1.8711 -6.5671 21 7 0.6570 -0.9486 -3.3379 22 1 -0.3634 -1.0274 0.0250 23 1 -0.3633 0.5354 0.8772 24 1 -0.3632 0.4920 -0.9022 25 1 2.3297 -0.0545 2.0255 26 1 1.3142 -1.4667 1.5961 27 1 4.1710 -0.8294 0.6749 28 1 3.5324 -2.3685 1.3415 29 1 2.2783 -2.8426 -0.6596 30 1 3.7644 -2.1024 -1.3331 31 1 -3.5492 -3.6154 -4.2242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306651789.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:25 Heat of formation + Delta-G solvation = 11.417425 kcal Electronic energy + Delta-G solvation = -15361.615514 eV Core-core repulsion = 12837.049929 eV Total energy + Delta-G solvation = -2524.565585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.02849 -39.65289 -36.05003 -35.34327 -32.71404 -31.97796 -29.64672 -28.43783 -26.09742 -23.70428 -23.30877 -21.58500 -20.77281 -18.85503 -17.85037 -17.38450 -17.21127 -16.28960 -15.87067 -15.04323 -14.63631 -14.51273 -14.05730 -13.63459 -13.55496 -13.16220 -13.04816 -12.44939 -12.18180 -12.02236 -11.91422 -11.90708 -11.69361 -11.60919 -11.50948 -11.42094 -11.21628 -10.87768 -10.12285 -8.94976 -7.06039 1.01697 1.39460 1.56230 1.60861 2.06760 2.14789 3.02718 3.22464 3.46243 3.61251 3.73428 4.07978 4.18681 4.37440 4.45858 4.54698 4.60566 4.71756 4.82283 4.89732 4.94122 4.95818 5.12101 5.19883 5.25334 5.27499 5.44351 5.50219 5.70801 5.89868 6.12575 6.33946 6.47958 8.07863 8.38162 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.065134 B = 0.007029 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.780069 B = 3982.436701 C = 4054.976219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 H 0.092 0.908 4 C -0.111 4.111 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.001 4.001 8 H 0.088 0.912 9 C 0.184 3.816 10 N -0.480 5.480 11 O 0.006 5.994 12 C 0.270 3.730 13 C -0.440 4.440 14 H 0.118 0.882 15 C 0.029 3.971 16 N -0.797 5.797 17 Si 1.021 2.979 18 H -0.249 1.249 19 H -0.256 1.256 20 H -0.256 1.256 21 N -0.648 5.648 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.009 0.991 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 2.523 4.614 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 H 0.111 0.889 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.021 4.021 8 H 0.107 0.893 9 C -0.090 4.090 10 N -0.216 5.216 11 O -0.034 6.034 12 C 0.081 3.919 13 C -0.477 4.477 14 H 0.135 0.865 15 C -0.193 4.193 16 N -0.425 5.425 17 Si 0.837 3.163 18 H -0.172 1.172 19 H -0.180 1.180 20 H -0.180 1.180 21 N -0.393 5.393 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.028 0.972 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.014 2.307 5.351 7.688 hybrid contribution -0.840 -0.212 -0.957 1.291 sum 4.174 2.094 4.394 6.413 Atomic orbital electron populations 1.22080 0.96679 1.01993 0.99354 1.21744 0.94676 0.99762 0.93765 0.88926 1.22417 0.97194 0.99006 0.96232 1.22470 0.97863 1.00680 0.93528 1.22413 0.98368 0.95971 0.98397 1.20353 0.90130 0.97596 0.94056 0.89344 1.25532 0.97911 0.94936 0.90624 1.74195 1.06974 1.25836 1.14558 1.85475 1.42808 1.57982 1.17145 1.24787 0.89156 0.86888 0.91088 1.19112 1.08314 1.26837 0.93423 0.86454 1.27371 0.96261 0.91318 1.04328 1.69696 1.19400 1.18406 1.34960 0.84586 0.77773 0.80010 0.73884 1.17164 1.18017 1.18050 1.72231 1.19254 1.34384 1.13432 0.92496 0.91340 0.97158 0.88710 0.92744 0.88974 0.90024 0.93898 0.90711 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.75 71.98 0.56 -5.11 16 2 C -0.08 -2.64 3.50 -10.06 -0.04 -2.67 16 3 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 4 C -0.11 -2.88 6.36 31.67 0.20 -2.68 16 5 C -0.11 -2.57 6.91 31.91 0.22 -2.35 16 6 C -0.11 -3.75 6.36 31.69 0.20 -3.55 16 7 C 0.00 -0.05 3.43 -10.82 -0.04 -0.08 16 8 H 0.09 3.32 8.14 -2.38 -0.02 3.31 16 9 C 0.18 9.55 5.11 138.60 0.71 10.26 16 10 N -0.48 -26.95 9.31 -56.63 -0.53 -27.48 16 11 O 0.01 0.38 9.74 64.23 0.63 1.01 16 12 C 0.27 16.27 7.82 85.06 0.66 16.93 16 13 C -0.44 -24.24 9.48 23.32 0.22 -24.02 16 14 H 0.12 6.10 7.85 -2.91 -0.02 6.08 16 15 C 0.03 1.41 5.50 85.43 0.47 1.88 16 16 N -0.80 -41.67 12.06 21.91 0.26 -41.40 16 17 Si 1.02 35.61 29.56 68.60 2.03 37.64 16 18 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 19 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 20 H -0.26 -8.41 7.11 99.48 0.71 -7.70 16 21 N -0.65 -37.58 11.61 -305.24 -3.54 -41.12 16 22 H 0.06 2.59 5.79 -2.39 -0.01 2.58 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.01 0.43 7.50 -2.39 -0.02 0.41 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.57 7.84 -2.39 -0.02 1.55 16 27 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.04 1.67 7.67 -2.39 -0.02 1.65 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.30 13.84 8.29 -92.71 -0.77 13.08 16 Total: -1.00 -67.98 257.78 3.15 -64.83 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.12 Total: 17.91 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.17 Total: -11.38 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.81 Total: -110.01 kcal Atomic # 8 Polarization: 0.38 SS G_CDS: 0.63 Total: 1.01 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -67.98 3.15 -64.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306651789.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.250 kcal (2) G-P(sol) polarization free energy of solvation -67.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds