Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.01475 * 2 1 4 4 C 1.53871 * 110.07119 * 238.58973 * 2 1 3 5 5 C 1.54270 * 106.59769 * 240.68678 * 4 2 1 6 6 C 1.54882 * 104.19291 * 23.61191 * 5 4 2 7 7 C 1.54264 * 110.03542 * 121.39333 * 2 1 3 8 8 H 1.09003 * 110.48477 * 214.53307 * 7 2 1 9 9 C 1.50697 * 110.48703 * 337.04992 * 7 2 1 10 10 N 1.30442 * 126.07552 * 59.68487 * 9 7 2 11 11 O 1.21283 * 110.68957 * 180.26611 * 10 9 7 12 12 C 1.34756 * 109.53027 * 359.97438 * 11 10 9 13 13 C 1.40333 * 126.79742 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00344 * 180.02562 * 13 12 11 15 15 C 1.40464 * 119.99598 * 0.02562 * 13 12 11 16 16 N 1.30503 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99640 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47139 * 60.00617 * 17 15 13 19 19 H 1.48508 * 109.46783 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47474 * 300.00221 * 17 15 13 21 21 N 1.33332 * 106.41148 * 0.02562 * 12 11 10 22 22 H 1.09001 * 109.46727 * 298.60314 * 1 2 3 23 23 H 1.08998 * 109.47259 * 58.60291 * 1 2 3 24 24 H 1.09000 * 109.46789 * 178.60696 * 1 2 3 25 25 H 1.09002 * 110.03470 * 359.97422 * 4 2 1 26 26 H 1.09004 * 110.03492 * 121.36153 * 4 2 1 27 27 H 1.09000 * 110.48277 * 142.28469 * 5 4 2 28 28 H 1.08992 * 110.48728 * 264.80018 * 5 4 2 29 29 H 1.09001 * 110.75983 * 203.74145 * 6 5 4 30 30 H 1.09005 * 110.76162 * 80.37350 * 6 5 4 31 31 H 0.97005 * 119.99986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0581 -0.7532 -1.2335 5 6 2.8892 -1.9397 -0.7029 6 6 2.3294 -2.1895 0.7195 7 6 2.0585 -0.7549 1.2371 8 1 2.9795 -0.2974 1.5986 9 6 1.0180 -0.7752 2.3270 10 7 -0.1777 -1.2889 2.2379 11 8 -0.7840 -1.1463 3.2787 12 6 -0.0043 -0.5029 4.1697 13 6 -0.3447 -0.1512 5.4849 14 1 0.3696 0.3669 6.1075 15 6 -1.6146 -0.4731 5.9916 16 7 -2.4776 -1.0996 5.2394 17 14 -2.0675 -0.0057 7.7426 18 1 -1.9820 1.4686 7.8992 19 1 -3.4534 -0.4541 8.0318 20 1 -1.1277 -0.6593 8.6883 21 7 1.1543 -0.2654 3.5541 22 1 -0.3633 0.4920 0.9023 23 1 -0.3634 0.5354 -0.8772 24 1 -0.3633 -1.0274 -0.0250 25 1 1.2244 -1.1196 -1.8325 26 1 2.6868 -0.0944 -1.8325 27 1 2.7426 -2.8189 -1.3303 28 1 3.9457 -1.6757 -0.6583 29 1 3.0690 -2.6918 1.3430 30 1 1.4048 -2.7652 0.6753 31 1 -3.3548 -1.3216 5.5892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306651795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = 31.363594 kcal Electronic energy + Delta-G solvation = -15313.060961 eV Core-core repulsion = 12789.360306 eV Total energy + Delta-G solvation = -2523.700655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.98438 -38.28957 -34.06220 -33.39780 -30.97765 -30.25993 -28.09655 -26.39899 -24.89276 -21.75142 -21.40372 -20.17287 -19.02445 -17.09454 -15.85490 -15.65391 -15.40264 -14.87397 -14.32840 -13.46684 -13.08348 -12.85969 -12.35733 -11.95043 -11.79697 -11.49847 -11.41927 -10.99743 -10.85030 -10.59073 -10.48277 -10.37141 -10.19943 -10.09987 -9.88235 -9.80645 -9.32599 -8.80604 -8.10237 -7.04390 -4.96124 2.83845 2.97551 3.01389 3.34179 3.76069 3.95414 4.85310 4.96328 4.98228 5.14108 5.37985 5.55940 5.68044 5.76012 5.79650 5.89809 5.96152 6.01556 6.13458 6.20271 6.39049 6.41369 6.51938 6.61204 6.73668 6.86904 6.90748 7.02636 7.53590 7.95103 8.17715 8.38610 8.52796 9.94989 10.47516 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.068516 B = 0.006871 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.566665 B = 4074.271620 C = 4173.862935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.011 3.989 8 H 0.086 0.914 9 C 0.170 3.830 10 N -0.462 5.462 11 O 0.042 5.958 12 C 0.301 3.699 13 C -0.419 4.419 14 H 0.110 0.890 15 C 0.071 3.929 16 N -0.766 5.766 17 Si 0.935 3.065 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.260 1.260 21 N -0.617 5.617 22 H 0.055 0.945 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 0.033 -5.546 6.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.009 4.009 8 H 0.104 0.896 9 C -0.103 4.103 10 N -0.192 5.192 11 O -0.004 6.004 12 C 0.110 3.890 13 C -0.457 4.457 14 H 0.128 0.872 15 C -0.153 4.153 16 N -0.393 5.393 17 Si 0.758 3.242 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.184 1.184 21 N -0.360 5.360 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.708 -0.274 -6.251 7.274 hybrid contribution -0.397 0.244 1.001 1.104 sum 3.311 -0.030 -5.251 6.208 Atomic orbital electron populations 1.21962 0.94038 1.02783 1.00360 1.21677 0.96941 0.98559 0.93383 0.91540 1.22213 0.99217 0.96805 0.97199 1.22329 0.99160 0.97974 0.96507 1.22525 1.01203 0.96184 0.95190 1.20116 0.94603 0.96202 0.90028 0.89587 1.24640 0.93408 0.98450 0.93835 1.74369 1.08692 1.28832 1.07298 1.85540 1.38357 1.60487 1.16063 1.24185 0.83003 0.88380 0.93427 1.18503 0.99690 1.34723 0.92772 0.87175 1.26172 0.95351 0.92648 1.01154 1.69629 1.06154 1.25978 1.37559 0.85913 0.78270 0.80210 0.79817 1.18420 1.19893 1.18411 1.72240 1.23756 1.34546 1.05501 0.92562 0.94386 0.91280 0.91750 0.92237 0.91921 0.91843 0.91816 0.90730 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.46 37.16 0.28 -2.29 16 2 C -0.09 -1.48 3.42 -89.50 -0.31 -1.79 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.12 -1.61 6.46 -25.61 -0.17 -1.77 16 5 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 6 C -0.11 -1.92 6.32 -24.74 -0.16 -2.07 16 7 C 0.01 0.21 3.32 -90.11 -0.30 -0.09 16 8 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 9 C 0.17 4.28 5.74 -156.79 -0.90 3.38 16 10 N -0.46 -12.33 8.97 31.51 0.28 -12.05 16 11 O 0.04 1.21 9.74 15.12 0.15 1.36 16 12 C 0.30 8.68 7.81 -16.35 -0.13 8.55 16 13 C -0.42 -11.24 9.48 -37.96 -0.36 -11.60 16 14 H 0.11 2.79 7.85 -52.49 -0.41 2.38 16 15 C 0.07 1.75 5.50 -17.28 -0.10 1.65 16 16 N -0.77 -19.70 12.06 55.57 0.67 -19.03 16 17 Si 0.94 17.81 29.56 -169.99 -5.03 12.78 16 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 21 N -0.62 -17.20 11.61 -11.51 -0.13 -17.34 16 22 H 0.06 1.27 6.49 -51.93 -0.34 0.94 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.40 7.22 -51.93 -0.38 1.03 16 25 H 0.06 0.86 7.67 -51.93 -0.40 0.47 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.40 7.89 -51.93 -0.41 0.99 16 31 H 0.29 6.66 8.29 -40.82 -0.34 6.32 16 LS Contribution 258.01 15.07 3.89 3.89 Total: -1.00 -29.49 258.01 -6.50 -35.98 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.03 Total: 2.23 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.30 Total: -7.83 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.82 Total: -48.42 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.15 Total: 1.36 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.49 -6.50 -35.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306651795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.348 kcal (2) G-P(sol) polarization free energy of solvation -29.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds