Wall clock time and date at job start Mon Mar 30 2020 02:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.01475 * 2 1 4 4 C 1.53871 * 110.07119 * 238.58973 * 2 1 3 5 5 C 1.54270 * 106.59769 * 240.68678 * 4 2 1 6 6 C 1.54882 * 104.19291 * 23.61191 * 5 4 2 7 7 C 1.54264 * 110.03542 * 121.39333 * 2 1 3 8 8 H 1.09003 * 110.48477 * 214.53307 * 7 2 1 9 9 C 1.50697 * 110.48703 * 337.04992 * 7 2 1 10 10 N 1.30442 * 126.07552 * 59.68487 * 9 7 2 11 11 O 1.21283 * 110.68957 * 180.26611 * 10 9 7 12 12 C 1.34756 * 109.53027 * 359.97438 * 11 10 9 13 13 C 1.40333 * 126.79742 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00344 * 180.02562 * 13 12 11 15 15 C 1.40464 * 119.99598 * 0.02562 * 13 12 11 16 16 N 1.30503 * 120.00120 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99640 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47139 * 60.00617 * 17 15 13 19 19 H 1.48508 * 109.46783 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47474 * 300.00221 * 17 15 13 21 21 N 1.33332 * 106.41148 * 0.02562 * 12 11 10 22 22 H 1.09001 * 109.46727 * 298.60314 * 1 2 3 23 23 H 1.08998 * 109.47259 * 58.60291 * 1 2 3 24 24 H 1.09000 * 109.46789 * 178.60696 * 1 2 3 25 25 H 1.09002 * 110.03470 * 359.97422 * 4 2 1 26 26 H 1.09004 * 110.03492 * 121.36153 * 4 2 1 27 27 H 1.09000 * 110.48277 * 142.28469 * 5 4 2 28 28 H 1.08992 * 110.48728 * 264.80018 * 5 4 2 29 29 H 1.09001 * 110.75983 * 203.74145 * 6 5 4 30 30 H 1.09005 * 110.76162 * 80.37350 * 6 5 4 31 31 H 0.97005 * 119.99986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0581 -0.7532 -1.2335 5 6 2.8892 -1.9397 -0.7029 6 6 2.3294 -2.1895 0.7195 7 6 2.0585 -0.7549 1.2371 8 1 2.9795 -0.2974 1.5986 9 6 1.0180 -0.7752 2.3270 10 7 -0.1777 -1.2889 2.2379 11 8 -0.7840 -1.1463 3.2787 12 6 -0.0043 -0.5029 4.1697 13 6 -0.3447 -0.1512 5.4849 14 1 0.3696 0.3669 6.1075 15 6 -1.6146 -0.4731 5.9916 16 7 -2.4776 -1.0996 5.2394 17 14 -2.0675 -0.0057 7.7426 18 1 -1.9820 1.4686 7.8992 19 1 -3.4534 -0.4541 8.0318 20 1 -1.1277 -0.6593 8.6883 21 7 1.1543 -0.2654 3.5541 22 1 -0.3633 0.4920 0.9023 23 1 -0.3634 0.5354 -0.8772 24 1 -0.3633 -1.0274 -0.0250 25 1 1.2244 -1.1196 -1.8325 26 1 2.6868 -0.0944 -1.8325 27 1 2.7426 -2.8189 -1.3303 28 1 3.9457 -1.6757 -0.6583 29 1 3.0690 -2.6918 1.3430 30 1 1.4048 -2.7652 0.6753 31 1 -3.3548 -1.3216 5.5892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306651795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:27 Heat of formation + Delta-G solvation = 11.672748 kcal Electronic energy + Delta-G solvation = -15313.914820 eV Core-core repulsion = 12789.360306 eV Total energy + Delta-G solvation = -2524.554514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.01813 -39.67896 -36.05000 -35.37013 -32.70477 -31.83600 -29.63644 -28.41898 -26.33747 -23.67719 -23.29859 -21.48918 -20.68446 -18.90974 -17.81914 -17.36343 -17.20963 -16.45525 -15.85326 -15.10088 -14.54987 -14.36317 -13.87370 -13.58190 -13.53717 -13.30914 -13.06226 -12.50921 -12.23460 -12.06061 -12.00773 -11.96320 -11.66655 -11.59701 -11.49395 -11.32716 -11.17563 -10.88345 -10.13401 -8.94552 -7.06341 1.03174 1.39468 1.57639 1.58313 2.06261 2.14834 3.02676 3.23881 3.45642 3.65612 3.73461 4.07781 4.18584 4.38275 4.46078 4.52013 4.61585 4.69891 4.80818 4.91268 4.93909 4.99239 5.15376 5.18444 5.26073 5.28824 5.45303 5.52592 5.66845 5.89327 6.12027 6.33723 6.47555 8.07822 8.37487 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.068516 B = 0.006871 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.566665 B = 4074.271620 C = 4173.862935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.111 4.111 7 C 0.000 4.000 8 H 0.091 0.909 9 C 0.179 3.821 10 N -0.477 5.477 11 O 0.006 5.994 12 C 0.269 3.731 13 C -0.440 4.440 14 H 0.118 0.882 15 C 0.029 3.971 16 N -0.798 5.798 17 Si 1.021 2.979 18 H -0.251 1.251 19 H -0.259 1.259 20 H -0.251 1.251 21 N -0.648 5.648 22 H 0.009 0.991 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 0.368 -5.810 7.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.150 4.150 7 C -0.020 4.020 8 H 0.109 0.891 9 C -0.095 4.095 10 N -0.212 5.212 11 O -0.034 6.034 12 C 0.080 3.920 13 C -0.478 4.478 14 H 0.136 0.864 15 C -0.193 4.193 16 N -0.425 5.425 17 Si 0.837 3.163 18 H -0.175 1.175 19 H -0.182 1.182 20 H -0.174 1.174 21 N -0.393 5.393 22 H 0.028 0.972 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.421 0.051 -6.520 7.878 hybrid contribution -0.650 0.140 1.080 1.268 sum 3.771 0.191 -5.439 6.622 Atomic orbital electron populations 1.21845 0.95837 1.01365 0.99273 1.21739 0.95276 0.99461 0.93915 0.90536 1.22186 0.99878 0.96985 0.95535 1.22316 1.00078 0.98690 0.93629 1.22508 1.00444 0.93989 0.98044 1.20504 0.93237 0.98757 0.89548 0.89061 1.25561 0.93797 0.96030 0.94134 1.74323 1.09541 1.30493 1.06842 1.85483 1.39356 1.61749 1.16852 1.24788 0.83610 0.89143 0.94445 1.19062 1.01315 1.34943 0.92434 0.86372 1.27375 0.94039 0.91608 1.06240 1.69692 1.06985 1.25697 1.40119 0.84677 0.78637 0.80207 0.72731 1.17474 1.18236 1.17424 1.72229 1.23972 1.36186 1.06928 0.97176 0.91541 0.93065 0.91257 0.89123 0.89873 0.89556 0.91488 0.93187 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 7.46 71.98 0.54 -4.32 16 2 C -0.08 -2.79 3.42 -10.07 -0.03 -2.83 16 3 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.11 -2.60 6.46 31.32 0.20 -2.40 16 5 C -0.11 -2.55 6.83 31.67 0.22 -2.33 16 6 C -0.11 -3.70 6.32 31.88 0.20 -3.50 16 7 C 0.00 -0.01 3.32 -10.47 -0.03 -0.05 16 8 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 9 C 0.18 9.34 5.74 138.61 0.80 10.13 16 10 N -0.48 -26.82 8.97 -56.62 -0.51 -27.32 16 11 O 0.01 0.39 9.74 64.19 0.63 1.01 16 12 C 0.27 16.25 7.81 85.06 0.66 16.92 16 13 C -0.44 -24.27 9.48 23.32 0.22 -24.05 16 14 H 0.12 6.10 7.85 -2.91 -0.02 6.08 16 15 C 0.03 1.43 5.50 85.43 0.47 1.90 16 16 N -0.80 -41.75 12.06 21.91 0.26 -41.49 16 17 Si 1.02 35.55 29.56 68.60 2.03 37.57 16 18 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 19 H -0.26 -8.30 7.11 99.48 0.71 -7.59 16 20 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 21 N -0.65 -37.69 11.61 -305.22 -3.54 -41.23 16 22 H 0.01 0.44 6.49 -2.39 -0.02 0.42 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 2.13 7.22 -2.39 -0.02 2.11 16 25 H 0.07 1.62 7.67 -2.39 -0.02 1.61 16 26 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.89 7.89 -2.38 -0.02 1.88 16 31 H 0.30 13.95 8.29 -92.70 -0.77 13.18 16 Total: -1.00 -67.90 258.01 3.23 -64.67 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.12 Total: 17.32 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 3.24 Total: -10.52 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -3.79 Total: -110.05 kcal Atomic # 8 Polarization: 0.39 SS G_CDS: 0.63 Total: 1.01 kcal Atomic # 14 Polarization: 35.55 SS G_CDS: 2.03 Total: 37.57 kcal Total: -67.90 3.23 -64.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306651795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.341 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds