Wall clock time and date at job start Mon Mar 30 2020 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36879 * 126.39428 * 2 1 4 4 C 1.34674 * 106.81444 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.01954 * 359.77921 * 4 3 2 6 6 C 1.30497 * 109.25803 * 0.37107 * 5 4 3 7 7 C 1.50697 * 125.65473 * 179.89428 * 6 5 4 8 8 H 1.08997 * 110.42053 * 196.99744 * 7 6 5 9 9 C 1.54487 * 110.37217 * 74.68611 * 7 6 5 10 10 C 1.54505 * 104.06179 * 217.19305 * 9 7 6 11 11 C 1.54472 * 104.06681 * 0.02562 * 10 9 7 12 12 H 1.09007 * 110.37121 * 265.03877 * 11 10 9 13 13 C 1.50695 * 110.37494 * 142.81177 * 11 10 9 14 14 H 1.07995 * 120.00004 * 359.97438 * 13 11 10 15 15 C 1.37882 * 120.00078 * 180.02562 * 13 11 10 16 16 N 1.31515 * 119.99964 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 120.00010 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47212 * 89.99354 * 17 15 13 19 19 H 1.48494 * 109.47079 * 209.99507 * 17 15 13 20 20 H 1.48498 * 109.46855 * 329.99707 * 17 15 13 21 21 O 1.44421 * 110.37173 * 319.31128 * 7 6 5 22 22 H 1.08999 * 109.47307 * 269.97773 * 1 2 3 23 23 H 1.09007 * 109.47135 * 29.97537 * 1 2 3 24 24 H 1.08997 * 109.47582 * 149.97791 * 1 2 3 25 25 H 1.07993 * 126.59957 * 0.05313 * 3 2 1 26 26 H 1.08001 * 125.99324 * 180.02562 * 4 3 2 27 27 H 1.09003 * 110.50578 * 335.84180 * 9 7 6 28 28 H 1.08999 * 110.50826 * 98.40716 * 9 7 6 29 29 H 1.09003 * 110.50916 * 118.64999 * 10 9 7 30 30 H 1.09005 * 110.51002 * 241.21544 * 10 9 7 31 31 H 0.96998 * 119.99678 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5095 -0.6903 0.0040 6 6 2.2663 -1.0870 -0.0006 7 6 1.8017 -2.5206 0.0000 8 1 0.7565 -2.5817 -0.3030 9 6 1.9938 -3.1476 1.3987 10 6 2.4250 -4.6014 1.1025 11 6 2.4431 -4.6806 -0.4401 12 1 1.4969 -5.0748 -0.8109 13 6 3.5882 -5.5414 -0.9079 14 1 4.2510 -5.9967 -0.1870 15 6 3.7903 -5.7468 -2.2562 16 7 2.9835 -5.1919 -3.1341 17 14 5.2102 -6.8132 -2.8360 18 1 4.7588 -8.2240 -2.9418 19 1 5.6734 -6.3408 -4.1655 20 1 6.3272 -6.7227 -1.8617 21 8 2.6271 -3.3169 -0.8778 22 1 -0.3634 -0.0004 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5141 25 1 1.9613 2.1345 0.0008 26 1 4.4369 1.2611 -0.0003 27 1 2.7745 -2.6221 1.9488 28 1 1.0576 -3.1308 1.9566 29 1 3.4189 -4.7947 1.5062 30 1 1.7026 -5.3057 1.5151 31 1 3.1259 -5.3362 -4.0827 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306835359.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:55 Heat of formation + Delta-G solvation = -4.396339 kcal Electronic energy + Delta-G solvation = -15229.490850 eV Core-core repulsion = 12704.239528 eV Total energy + Delta-G solvation = -2525.251322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.98436 -39.74010 -34.90541 -34.78231 -32.68308 -31.85579 -29.26430 -27.83209 -26.44951 -23.67039 -22.17066 -21.88262 -20.55366 -18.89592 -17.93079 -17.03164 -16.51264 -16.38643 -15.98860 -15.68775 -14.86635 -14.39127 -14.30478 -14.06652 -13.75382 -13.60291 -13.36518 -12.82377 -12.48861 -12.39474 -12.16014 -11.99734 -11.44388 -11.09305 -10.78660 -10.72888 -10.51105 -10.12208 -9.26285 -8.18317 -6.37269 1.09229 1.38679 1.42238 1.52598 1.89975 2.22700 2.40420 3.05900 3.45042 3.69560 3.90637 3.97124 4.09563 4.14681 4.41003 4.45483 4.50121 4.63417 4.69074 4.74170 4.80443 4.96649 5.06283 5.21306 5.39995 5.50702 5.72996 5.91126 6.12930 6.25174 6.52975 6.88668 7.31001 7.37687 8.90701 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038116 B = 0.007875 C = 0.007407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.419565 B = 3554.752098 C = 3779.394201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.456 5.456 3 C -0.041 4.041 4 C -0.070 4.070 5 N -0.522 5.522 6 C 0.194 3.806 7 C 0.141 3.859 8 H 0.077 0.923 9 C -0.124 4.124 10 C -0.136 4.136 11 C 0.195 3.805 12 H 0.006 0.994 13 C -0.550 4.550 14 H 0.064 0.936 15 C 0.020 3.980 16 N -0.904 5.904 17 Si 0.964 3.036 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.268 1.268 21 O -0.374 6.374 22 H 0.100 0.900 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.222 0.778 26 H 0.184 0.816 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.741 11.072 7.856 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.139 5.139 3 C -0.174 4.174 4 C -0.218 4.218 5 N -0.242 5.242 6 C -0.069 4.069 7 C 0.081 3.919 8 H 0.095 0.905 9 C -0.163 4.163 10 C -0.174 4.174 11 C 0.140 3.860 12 H 0.023 0.977 13 C -0.587 4.587 14 H 0.083 0.917 15 C -0.182 4.182 16 N -0.542 5.542 17 Si 0.788 3.212 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.192 1.192 21 O -0.293 6.293 22 H 0.119 0.881 23 H 0.134 0.866 24 H 0.101 0.899 25 H 0.239 0.761 26 H 0.201 0.799 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.147 10.640 7.504 14.852 hybrid contribution 0.091 -0.013 -0.577 0.585 sum -7.056 10.626 6.926 14.515 Atomic orbital electron populations 1.22430 0.74113 1.06043 1.05417 1.45568 1.09199 1.05591 1.53549 1.23305 0.90363 0.93672 1.10105 1.22865 0.98594 0.90511 1.09843 1.70202 1.20505 1.13721 1.19725 1.22922 0.86160 0.90929 1.06873 1.21106 0.94381 0.84155 0.92256 0.90515 1.22815 1.02489 0.95463 0.95509 1.22908 1.01346 0.96126 0.96992 1.20510 0.95445 0.80146 0.89914 0.97656 1.21483 1.15196 1.29419 0.92646 0.91738 1.26004 0.98722 0.96334 0.97122 1.70155 1.38709 1.43602 1.01691 0.85487 0.79261 0.78992 0.77475 1.18690 1.20987 1.19241 1.89542 1.66042 1.19366 1.54380 0.88138 0.86601 0.89898 0.76106 0.79890 0.92118 0.87849 0.92557 0.89698 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 10.95 127.77 1.40 2.47 16 2 N -0.46 -13.31 3.15 -537.62 -1.69 -15.00 16 3 C -0.04 -1.07 11.58 83.09 0.96 -0.10 16 4 C -0.07 -2.38 11.87 83.52 0.99 -1.39 16 5 N -0.52 -23.46 11.24 -188.13 -2.11 -25.58 16 6 C 0.19 7.85 6.74 138.13 0.93 8.78 16 7 C 0.14 6.04 3.63 30.35 0.11 6.15 16 8 H 0.08 2.91 6.84 -2.39 -0.02 2.89 16 9 C -0.12 -4.60 6.62 31.61 0.21 -4.39 16 10 C -0.14 -5.81 6.62 31.61 0.21 -5.60 16 11 C 0.20 10.68 3.06 30.35 0.09 10.77 16 12 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 13 C -0.55 -32.86 8.77 25.60 0.22 -32.64 16 14 H 0.06 3.72 7.57 -2.91 -0.02 3.70 16 15 C 0.02 1.19 5.43 84.66 0.46 1.65 16 16 N -0.90 -56.91 13.07 21.45 0.28 -56.63 16 17 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 19 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 20 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 21 O -0.37 -21.39 10.71 -148.98 -1.60 -22.98 16 22 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.08 1.58 6.95 -2.39 -0.02 1.56 16 25 H 0.22 3.23 8.06 -2.91 -0.02 3.21 16 26 H 0.18 5.08 8.06 -2.91 -0.02 5.05 16 27 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.06 2.49 7.71 -2.39 -0.02 2.48 16 30 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -80.73 266.36 3.61 -77.12 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.11 Total: 9.10 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.59 Total: -14.31 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -3.53 Total: -97.21 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -1.60 Total: -22.98 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.73 3.61 -77.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835359.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.727 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds