Wall clock time and date at job start Mon Mar 30 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36887 * 126.39319 * 2 1 4 4 C 1.34669 * 106.81496 * 180.25621 * 3 2 1 5 5 N 1.34134 * 108.01766 * 359.74239 * 4 3 2 6 6 C 1.30497 * 109.25720 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.64744 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.82439 * 164.46403 * 7 6 5 9 9 C 1.54388 * 109.83350 * 285.43976 * 7 6 5 10 10 C 1.55306 * 102.25188 * 140.87222 * 9 7 6 11 11 C 1.54954 * 100.94149 * 325.86669 * 10 9 7 12 12 H 1.08997 * 110.39142 * 277.48750 * 11 10 9 13 13 C 1.50699 * 110.30654 * 155.36157 * 11 10 9 14 14 H 1.08002 * 120.00516 * 2.83031 * 13 11 10 15 15 C 1.37884 * 119.99783 * 182.83331 * 13 11 10 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 11 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 O 1.43232 * 109.83370 * 43.57713 * 7 6 5 22 22 H 1.09002 * 109.46593 * 270.18519 * 1 2 3 23 23 H 1.08996 * 109.47374 * 30.18491 * 1 2 3 24 24 H 1.08998 * 109.47264 * 150.18582 * 1 2 3 25 25 H 1.07994 * 126.59234 * 359.97438 * 3 2 1 26 26 H 1.07999 * 125.99240 * 179.76535 * 4 3 2 27 27 H 1.08997 * 110.84351 * 259.06039 * 9 7 6 28 28 H 1.08996 * 110.84682 * 22.47681 * 9 7 6 29 29 H 1.09004 * 111.12232 * 207.95117 * 10 9 7 30 30 H 1.08997 * 111.12706 * 83.78462 * 10 9 7 31 31 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1019 0.0000 4 6 3.5461 0.6506 -0.0058 5 7 3.5096 -0.6902 -0.0035 6 6 2.2664 -1.0869 0.0041 7 6 1.8019 -2.5205 0.0084 8 1 0.7497 -2.5674 0.2891 9 6 2.0004 -3.1396 -1.3920 10 6 2.4821 -4.5764 -1.0519 11 6 3.3023 -4.3143 0.2364 12 1 4.3066 -3.9738 -0.0154 13 6 3.3697 -5.5636 1.0766 14 1 2.9207 -6.4789 0.7203 15 6 4.0046 -5.5379 2.3003 16 7 4.5508 -4.4231 2.7344 17 14 4.0949 -7.0882 3.3384 18 1 2.9146 -7.1515 4.2375 19 1 4.1050 -8.2786 2.4505 20 1 5.3367 -7.0673 4.1524 21 8 2.5860 -3.2826 0.9336 22 1 -0.3632 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5167 24 1 -0.3634 -0.8916 -0.5109 25 1 1.9612 2.1346 -0.0004 26 1 4.4368 1.2612 -0.0109 27 1 1.0593 -3.1659 -1.9413 28 1 2.7599 -2.5950 -1.9528 29 1 3.1136 -4.9769 -1.8449 30 1 1.6382 -5.2368 -0.8528 31 1 4.9972 -4.4049 3.5955 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306835379.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:01 Heat of formation + Delta-G solvation = 20.297368 kcal Electronic energy + Delta-G solvation = -15292.948641 eV Core-core repulsion = 12768.768119 eV Total energy + Delta-G solvation = -2524.180522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61039 -37.92445 -33.64867 -32.61357 -30.93141 -30.13975 -27.60843 -26.68454 -24.57002 -21.69926 -20.85390 -20.30128 -19.03287 -16.92910 -16.40949 -15.40260 -15.20360 -14.73755 -14.17785 -13.97959 -13.31416 -13.02316 -12.70215 -12.53524 -12.26570 -12.11444 -11.68457 -10.92532 -10.80786 -10.53742 -10.36442 -10.20118 -9.80357 -9.32272 -9.16288 -9.05566 -8.52301 -8.05598 -7.76757 -5.89823 -4.05493 2.42851 3.11889 3.36332 3.42423 3.45010 3.69442 4.48759 4.81004 4.94702 5.09779 5.15404 5.22483 5.39680 5.46018 5.54758 5.64921 5.80673 5.98433 6.12483 6.29405 6.37957 6.63947 6.72132 6.76821 6.83950 7.21857 7.58141 7.71243 7.98348 8.33885 8.62352 8.73827 9.09551 9.65035 11.16126 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039775 B = 0.007996 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.786764 B = 3500.956170 C = 3759.943275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.465 5.465 3 C -0.079 4.079 4 C -0.031 4.031 5 N -0.464 5.464 6 C 0.215 3.785 7 C 0.157 3.843 8 H 0.069 0.931 9 C -0.143 4.143 10 C -0.146 4.146 11 C 0.213 3.787 12 H 0.034 0.966 13 C -0.539 4.539 14 H 0.063 0.937 15 C 0.078 3.922 16 N -0.853 5.853 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.286 1.286 21 O -0.333 6.333 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.168 0.832 26 H 0.164 0.836 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 8.538 -6.706 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.150 5.150 3 C -0.211 4.211 4 C -0.180 4.180 5 N -0.181 5.181 6 C -0.048 4.048 7 C 0.095 3.905 8 H 0.087 0.913 9 C -0.181 4.181 10 C -0.183 4.183 11 C 0.158 3.842 12 H 0.052 0.948 13 C -0.576 4.576 14 H 0.082 0.918 15 C -0.129 4.129 16 N -0.489 5.489 17 Si 0.717 3.283 18 H -0.206 1.206 19 H -0.198 1.198 20 H -0.211 1.211 21 O -0.250 6.250 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.185 0.815 26 H 0.181 0.819 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.848 8.139 -6.334 12.960 hybrid contribution -0.720 0.090 0.520 0.893 sum -8.568 8.229 -5.814 13.226 Atomic orbital electron populations 1.21967 0.77508 1.04068 1.03400 1.45370 1.07172 1.06752 1.55667 1.22515 0.91693 0.92088 1.14819 1.22347 0.96050 0.91815 1.07768 1.70357 1.18641 1.10826 1.18320 1.24267 0.85730 0.91394 1.03413 1.20749 0.94983 0.83064 0.91715 0.91303 1.23089 1.01045 0.98031 0.95976 1.23348 1.00578 0.94159 1.00252 1.20593 0.90694 0.86006 0.86914 0.94804 1.21099 1.37641 0.94347 1.04522 0.91842 1.25112 0.94314 0.95782 0.97690 1.70095 1.33885 1.25628 1.19253 0.86659 0.77502 0.83663 0.80489 1.20605 1.19752 1.21141 1.88944 1.60928 1.45278 1.29899 0.90760 0.90067 0.89620 0.81519 0.81877 0.91793 0.90965 0.91626 0.91477 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.76 59.85 0.64 1.44 16 2 N -0.46 -7.52 3.15 -121.28 -0.38 -7.90 16 3 C -0.08 -1.20 11.58 -16.56 -0.19 -1.39 16 4 C -0.03 -0.56 11.87 -17.81 -0.21 -0.77 16 5 N -0.46 -10.56 11.25 -10.82 -0.12 -10.68 16 6 C 0.22 4.44 6.66 -155.43 -1.04 3.41 16 7 C 0.16 3.31 3.78 -27.16 -0.10 3.20 16 8 H 0.07 1.28 7.14 -51.93 -0.37 0.91 16 9 C -0.14 -2.66 6.54 -24.78 -0.16 -2.82 16 10 C -0.15 -3.07 6.53 -24.48 -0.16 -3.23 16 11 C 0.21 5.74 3.27 -26.85 -0.09 5.65 16 12 H 0.03 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.54 -15.51 8.81 -34.44 -0.30 -15.81 16 14 H 0.06 1.74 7.77 -52.49 -0.41 1.34 16 15 C 0.08 2.27 5.42 -17.82 -0.10 2.18 16 16 N -0.85 -26.56 12.93 55.43 0.72 -25.84 16 17 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 O -0.33 -9.12 10.20 -35.23 -0.36 -9.48 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 0.84 7.35 -51.93 -0.38 0.45 16 25 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.16 2.47 8.06 -52.49 -0.42 2.05 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.38 7.84 -51.93 -0.41 0.98 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -35.45 266.87 -6.93 -42.39 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.08 Total: -1.15 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.71 Total: -8.15 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.21 Total: -44.43 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.36 Total: -9.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -35.45 -6.93 -42.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835379.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.683 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds