Wall clock time and date at job start Mon Mar 30 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36887 * 126.39319 * 2 1 4 4 C 1.34669 * 106.81496 * 180.25621 * 3 2 1 5 5 N 1.34134 * 108.01766 * 359.74239 * 4 3 2 6 6 C 1.30497 * 109.25720 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.64744 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.82439 * 164.46403 * 7 6 5 9 9 C 1.54388 * 109.83350 * 285.43976 * 7 6 5 10 10 C 1.55306 * 102.25188 * 140.87222 * 9 7 6 11 11 C 1.54954 * 100.94149 * 325.86669 * 10 9 7 12 12 H 1.08997 * 110.39142 * 277.48750 * 11 10 9 13 13 C 1.50699 * 110.30654 * 155.36157 * 11 10 9 14 14 H 1.08002 * 120.00516 * 2.83031 * 13 11 10 15 15 C 1.37884 * 119.99783 * 182.83331 * 13 11 10 16 16 N 1.31514 * 119.99707 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99956 * 180.27458 * 15 13 11 18 18 H 1.48503 * 109.47407 * 269.72718 * 17 15 13 19 19 H 1.48505 * 109.47281 * 29.72474 * 17 15 13 20 20 H 1.48501 * 109.47274 * 149.72572 * 17 15 13 21 21 O 1.43232 * 109.83370 * 43.57713 * 7 6 5 22 22 H 1.09002 * 109.46593 * 270.18519 * 1 2 3 23 23 H 1.08996 * 109.47374 * 30.18491 * 1 2 3 24 24 H 1.08998 * 109.47264 * 150.18582 * 1 2 3 25 25 H 1.07994 * 126.59234 * 359.97438 * 3 2 1 26 26 H 1.07999 * 125.99240 * 179.76535 * 4 3 2 27 27 H 1.08997 * 110.84351 * 259.06039 * 9 7 6 28 28 H 1.08996 * 110.84682 * 22.47681 * 9 7 6 29 29 H 1.09004 * 111.12232 * 207.95117 * 10 9 7 30 30 H 1.08997 * 111.12706 * 83.78462 * 10 9 7 31 31 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2773 1.1019 0.0000 4 6 3.5461 0.6506 -0.0058 5 7 3.5096 -0.6902 -0.0035 6 6 2.2664 -1.0869 0.0041 7 6 1.8019 -2.5205 0.0084 8 1 0.7497 -2.5674 0.2891 9 6 2.0004 -3.1396 -1.3920 10 6 2.4821 -4.5764 -1.0519 11 6 3.3023 -4.3143 0.2364 12 1 4.3066 -3.9738 -0.0154 13 6 3.3697 -5.5636 1.0766 14 1 2.9207 -6.4789 0.7203 15 6 4.0046 -5.5379 2.3003 16 7 4.5508 -4.4231 2.7344 17 14 4.0949 -7.0882 3.3384 18 1 2.9146 -7.1515 4.2375 19 1 4.1050 -8.2786 2.4505 20 1 5.3367 -7.0673 4.1524 21 8 2.5860 -3.2826 0.9336 22 1 -0.3632 0.0033 1.0277 23 1 -0.3634 0.8883 -0.5167 24 1 -0.3634 -0.8916 -0.5109 25 1 1.9612 2.1346 -0.0004 26 1 4.4368 1.2612 -0.0109 27 1 1.0593 -3.1659 -1.9413 28 1 2.7599 -2.5950 -1.9528 29 1 3.1136 -4.9769 -1.8449 30 1 1.6382 -5.2368 -0.8528 31 1 4.9972 -4.4049 3.5955 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306835379.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:00 Heat of formation + Delta-G solvation = -4.793020 kcal Electronic energy + Delta-G solvation = -15294.036642 eV Core-core repulsion = 12768.768119 eV Total energy + Delta-G solvation = -2525.268523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94767 -39.73164 -34.87783 -34.74658 -32.70358 -31.80464 -29.27177 -27.79208 -26.46156 -23.38784 -22.19306 -22.09429 -20.49250 -18.67066 -18.09265 -16.96801 -16.77922 -16.42216 -15.98572 -15.34753 -14.92068 -14.32173 -14.20041 -13.90083 -13.69482 -13.57540 -13.37990 -12.80823 -12.45306 -12.33714 -12.25712 -12.07874 -11.56126 -11.01915 -10.76090 -10.69517 -10.47663 -9.98496 -9.21230 -8.10274 -6.34560 1.13128 1.41212 1.43684 1.54607 1.96990 2.26203 2.42568 3.10767 3.53487 3.70792 3.83906 3.99190 4.04464 4.16439 4.42304 4.48507 4.53138 4.65726 4.68726 4.72821 4.86803 4.92304 5.12076 5.20362 5.40962 5.59391 5.78256 5.94417 6.19345 6.31592 6.59980 7.02456 7.35966 7.42571 8.96765 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039775 B = 0.007996 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.786764 B = 3500.956170 C = 3759.943275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.458 5.458 3 C -0.044 4.044 4 C -0.074 4.074 5 N -0.527 5.527 6 C 0.181 3.819 7 C 0.146 3.854 8 H 0.096 0.904 9 C -0.126 4.126 10 C -0.135 4.135 11 C 0.207 3.793 12 H -0.020 1.020 13 C -0.557 4.557 14 H 0.074 0.926 15 C 0.017 3.983 16 N -0.902 5.902 17 Si 0.967 3.033 18 H -0.273 1.273 19 H -0.257 1.257 20 H -0.284 1.284 21 O -0.375 6.375 22 H 0.082 0.918 23 H 0.120 0.880 24 H 0.096 0.904 25 H 0.220 0.780 26 H 0.178 0.822 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 8.961 -7.422 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.141 5.141 3 C -0.178 4.178 4 C -0.221 4.221 5 N -0.247 5.247 6 C -0.082 4.082 7 C 0.085 3.915 8 H 0.114 0.886 9 C -0.164 4.164 10 C -0.173 4.173 11 C 0.151 3.849 12 H -0.002 1.002 13 C -0.594 4.594 14 H 0.092 0.908 15 C -0.185 4.185 16 N -0.539 5.539 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.180 1.180 20 H -0.210 1.210 21 O -0.293 6.293 22 H 0.100 0.900 23 H 0.138 0.862 24 H 0.115 0.885 25 H 0.237 0.763 26 H 0.195 0.805 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.477 8.553 -7.073 15.263 hybrid contribution 0.043 0.110 0.699 0.709 sum -10.434 8.663 -6.374 14.985 Atomic orbital electron populations 1.22413 0.74086 1.06641 1.04759 1.45620 1.09179 1.05595 1.53727 1.23246 0.90386 0.93750 1.10396 1.22804 0.98510 0.90693 1.10128 1.70213 1.20916 1.13631 1.19901 1.23942 0.86143 0.92133 1.05987 1.21066 0.95271 0.83181 0.91951 0.88619 1.23013 1.02887 0.95477 0.95063 1.23214 1.00258 0.96257 0.97582 1.20388 0.89520 0.85516 0.89453 1.00220 1.21593 1.37338 0.95571 1.04908 0.90822 1.26105 0.93805 0.99324 0.99292 1.70291 1.35448 1.28467 1.19715 0.85455 0.77505 0.79450 0.78556 1.19865 1.18034 1.21002 1.88811 1.61693 1.46332 1.32489 0.89959 0.86185 0.88538 0.76343 0.80453 0.86947 0.92214 0.90411 0.90096 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 10.76 127.77 1.37 2.45 16 2 N -0.46 -13.68 3.15 -537.61 -1.69 -15.37 16 3 C -0.04 -1.22 11.58 83.09 0.96 -0.26 16 4 C -0.07 -2.67 11.87 83.52 0.99 -1.68 16 5 N -0.53 -24.81 11.25 -188.14 -2.12 -26.93 16 6 C 0.18 7.46 6.66 138.13 0.92 8.38 16 7 C 0.15 6.13 3.78 30.32 0.11 6.24 16 8 H 0.10 3.38 7.14 -2.38 -0.02 3.36 16 9 C -0.13 -4.53 6.54 31.86 0.21 -4.32 16 10 C -0.14 -5.65 6.53 32.05 0.21 -5.44 16 11 C 0.21 11.59 3.27 30.52 0.10 11.69 16 12 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 13 C -0.56 -32.81 8.81 25.60 0.23 -32.59 16 14 H 0.07 4.05 7.77 -2.91 -0.02 4.03 16 15 C 0.02 1.00 5.42 84.66 0.46 1.46 16 16 N -0.90 -58.72 12.93 21.45 0.28 -58.45 16 17 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 21 O -0.38 -21.27 10.20 -148.98 -1.52 -22.79 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.10 1.49 7.35 -2.39 -0.02 1.47 16 25 H 0.22 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 27 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.06 2.28 7.84 -2.39 -0.02 2.27 16 29 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.08 3.13 8.05 -2.39 -0.02 3.12 16 31 H 0.26 15.90 8.31 -92.70 -0.77 15.13 16 Total: -1.00 -83.09 266.87 3.65 -79.44 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.11 Total: 10.51 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.56 Total: -14.07 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -3.53 Total: -100.75 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -1.52 Total: -22.79 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -83.09 3.65 -79.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306835379.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.650 kcal (2) G-P(sol) polarization free energy of solvation -83.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds