Wall clock time and date at job start Mon Mar 30 2020 02:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 O 1.42903 * 109.47523 * 239.99536 * 2 1 3 5 5 C 1.53004 * 109.47023 * 119.99589 * 2 1 3 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 2 1 7 7 C 1.39245 * 119.99728 * 180.27876 * 6 5 2 8 8 C 1.39714 * 120.78714 * 359.72011 * 7 6 5 9 9 C 1.38444 * 119.47274 * 179.97438 * 8 7 6 10 10 N 1.31531 * 121.11298 * 0.02829 * 9 8 7 11 11 C 1.33702 * 121.69262 * 359.97235 * 10 9 8 12 12 C 1.41460 * 119.79270 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00021 * 179.97438 * 12 11 10 14 14 C 1.40015 * 119.99871 * 0.02562 * 12 11 10 15 15 N 1.30749 * 120.00396 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99668 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47280 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47346 * 119.99963 * 16 14 12 19 19 H 1.48500 * 109.47040 * 239.99763 * 16 14 12 20 20 C 1.39029 * 120.78125 * 179.44452 * 7 6 5 21 21 H 1.08991 * 109.47437 * 300.00370 * 1 2 3 22 22 H 1.09004 * 109.46778 * 60.00640 * 1 2 3 23 23 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 24 24 H 0.96706 * 113.99936 * 300.00702 * 4 2 1 25 25 H 1.09009 * 109.46730 * 64.99908 * 5 2 1 26 26 H 1.08998 * 109.46846 * 305.00453 * 5 2 1 27 27 H 0.97001 * 119.99790 * 359.97438 * 6 5 2 28 28 H 1.08005 * 120.25926 * 359.95767 * 8 7 6 29 29 H 1.08001 * 119.44876 * 180.02562 * 9 8 7 30 30 H 0.96997 * 120.00112 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.55582 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3111 7 6 4.1957 -1.2066 2.3638 8 6 3.5175 -1.8949 3.3729 9 6 4.2365 -2.4704 4.4066 10 7 5.5477 -2.3799 4.4553 11 6 6.2425 -1.7323 3.5143 12 6 7.6522 -1.6592 3.6067 13 1 8.2168 -1.1374 2.8483 14 6 8.3156 -2.2644 4.6810 15 7 7.6322 -2.8966 5.5990 16 14 10.1772 -2.1684 4.8027 17 1 10.7100 -1.4033 3.6469 18 1 10.5562 -1.4858 6.0659 19 1 10.7453 -3.5404 4.7918 20 6 5.5821 -1.1284 2.4325 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 -1.5953 -1.2328 25 1 1.7515 -1.7715 1.2057 26 1 1.6053 -0.2616 2.1370 27 1 3.9824 -0.1429 0.6163 28 1 2.4409 -1.9770 3.3469 29 1 3.7119 -3.0027 5.1863 30 1 8.0918 -3.3155 6.3434 31 1 6.1411 -0.6082 1.6687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307078643.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:18 Heat of formation + Delta-G solvation = -24.500134 kcal Electronic energy + Delta-G solvation = -14509.895614 eV Core-core repulsion = 11983.772527 eV Total energy + Delta-G solvation = -2526.123088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.54891 -37.62226 -34.84377 -33.21162 -31.39534 -29.83912 -28.72918 -25.94667 -24.91279 -22.13511 -21.22540 -20.46856 -17.53149 -16.71993 -15.99081 -15.63795 -15.07974 -14.65091 -14.04273 -13.73978 -13.38479 -13.16976 -12.86955 -12.40684 -12.18625 -12.07177 -11.86297 -11.16771 -11.13151 -10.95337 -10.58536 -10.38670 -10.08628 -9.72357 -9.69509 -9.08487 -7.53295 -7.42408 -6.63291 -6.28867 -4.43543 2.85806 3.14434 3.19085 3.22644 3.40029 3.97219 4.04226 4.40042 4.75458 4.87354 4.99669 5.06633 5.48943 5.53129 5.81763 5.86882 6.04967 6.12009 6.18208 6.49614 6.74639 6.97713 7.16511 7.25506 7.51668 7.58028 7.67794 7.74567 8.33122 8.45159 8.55041 8.84123 9.08737 10.28864 10.44952 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060437 B = 0.005633 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.184030 B = 4969.245655 C = 5341.505323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.101 0.899 4 O -0.561 6.561 5 C 0.105 3.895 6 N -0.751 5.751 7 C 0.254 3.746 8 C -0.373 4.373 9 C 0.149 3.851 10 N -0.506 5.506 11 C 0.282 3.718 12 C -0.435 4.435 13 H 0.081 0.919 14 C 0.071 3.929 15 N -0.717 5.717 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.344 4.344 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.375 0.625 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.393 0.607 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.270 0.730 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 2.959 -6.624 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.119 0.881 4 O -0.367 6.367 5 C -0.021 4.021 6 N -0.385 5.385 7 C 0.148 3.852 8 C -0.401 4.401 9 C -0.018 4.018 10 N -0.221 5.221 11 C 0.157 3.843 12 C -0.467 4.467 13 H 0.099 0.901 14 C -0.154 4.154 15 N -0.338 5.338 16 Si 0.729 3.271 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.371 4.371 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.223 0.777 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.492 3.003 -5.808 10.718 hybrid contribution 0.076 0.066 -0.703 0.710 sum -8.416 3.069 -6.511 11.074 Atomic orbital electron populations 1.22420 0.95824 1.02787 1.02895 1.22159 0.93122 0.97048 0.84553 0.88107 1.86579 1.77392 1.29131 1.43596 1.21809 0.83204 0.99733 0.97358 1.44244 1.04108 1.62772 1.27347 1.17677 0.91044 0.90068 0.86406 1.20826 0.97932 1.18519 1.02847 1.22283 0.91821 0.93644 0.94080 1.68766 1.05058 1.20918 1.27339 1.18353 0.93478 0.86372 0.86060 1.19617 0.90620 1.29455 1.06969 0.90080 1.26063 1.00238 0.93961 0.95130 1.70173 1.36395 1.20447 1.06803 0.86326 0.82795 0.78808 0.79168 1.18484 1.19901 1.19902 1.21162 0.91464 1.18565 1.05949 0.91292 0.91645 0.92079 0.77729 0.92894 0.92297 0.77322 0.89237 0.86691 0.91883 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.53 37.16 0.35 -1.20 16 2 C 0.09 1.02 3.62 -26.73 -0.10 0.92 16 3 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 4 O -0.56 -6.83 13.29 -35.23 -0.47 -7.29 16 5 C 0.10 1.49 4.58 -4.04 -0.02 1.47 16 6 N -0.75 -13.71 5.67 -58.50 -0.33 -14.04 16 7 C 0.25 5.86 6.69 -83.65 -0.56 5.30 16 8 C -0.37 -8.65 9.40 -38.95 -0.37 -9.01 16 9 C 0.15 3.75 11.17 -17.60 -0.20 3.56 16 10 N -0.51 -14.53 7.86 -11.21 -0.09 -14.61 16 11 C 0.28 8.05 6.55 -85.01 -0.56 7.50 16 12 C -0.44 -12.15 9.14 -37.69 -0.34 -12.49 16 13 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 14 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16 15 N -0.72 -19.72 11.46 55.55 0.64 -19.08 16 16 Si 0.90 19.13 29.56 -169.99 -5.02 14.11 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 C -0.34 -8.88 9.72 -38.48 -0.37 -9.25 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.38 3.43 9.05 45.56 0.41 3.84 16 25 H 0.05 0.76 7.99 -51.92 -0.41 0.34 16 26 H 0.06 0.84 7.99 -51.93 -0.41 0.43 16 27 H 0.39 6.83 8.50 -40.82 -0.35 6.49 16 28 H 0.09 1.83 6.87 -52.48 -0.36 1.47 16 29 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16 30 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 31 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 LS Contribution 270.27 15.07 4.07 4.07 Total: -1.00 -31.52 270.27 -6.66 -38.18 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.21 Total: 10.11 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -2.25 Total: -11.45 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.22 Total: -47.73 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.47 Total: -7.29 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.52 -6.66 -38.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307078643.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds