Wall clock time and date at job start Mon Mar 30 2020 02:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47395 * 2 1 4 4 O 1.42903 * 109.47523 * 239.99536 * 2 1 3 5 5 C 1.53004 * 109.47023 * 119.99589 * 2 1 3 6 6 N 1.46499 * 109.47198 * 185.00121 * 5 2 1 7 7 C 1.39245 * 119.99728 * 180.27876 * 6 5 2 8 8 C 1.39714 * 120.78714 * 359.72011 * 7 6 5 9 9 C 1.38444 * 119.47274 * 179.97438 * 8 7 6 10 10 N 1.31531 * 121.11298 * 0.02829 * 9 8 7 11 11 C 1.33702 * 121.69262 * 359.97235 * 10 9 8 12 12 C 1.41460 * 119.79270 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00021 * 179.97438 * 12 11 10 14 14 C 1.40015 * 119.99871 * 0.02562 * 12 11 10 15 15 N 1.30749 * 120.00396 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99668 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47280 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47346 * 119.99963 * 16 14 12 19 19 H 1.48500 * 109.47040 * 239.99763 * 16 14 12 20 20 C 1.39029 * 120.78125 * 179.44452 * 7 6 5 21 21 H 1.08991 * 109.47437 * 300.00370 * 1 2 3 22 22 H 1.09004 * 109.46778 * 60.00640 * 1 2 3 23 23 H 1.09005 * 109.47209 * 179.97438 * 1 2 3 24 24 H 0.96706 * 113.99936 * 300.00702 * 4 2 1 25 25 H 1.09009 * 109.46730 * 64.99908 * 5 2 1 26 26 H 1.08998 * 109.46846 * 305.00453 * 5 2 1 27 27 H 0.97001 * 119.99790 * 359.97438 * 6 5 2 28 28 H 1.08005 * 120.25926 * 359.95767 * 8 7 6 29 29 H 1.08001 * 119.44876 * 180.02562 * 9 8 7 30 30 H 0.96997 * 120.00112 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.55582 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.6178 1.3111 7 6 4.1957 -1.2066 2.3638 8 6 3.5175 -1.8949 3.3729 9 6 4.2365 -2.4704 4.4066 10 7 5.5477 -2.3799 4.4553 11 6 6.2425 -1.7323 3.5143 12 6 7.6522 -1.6592 3.6067 13 1 8.2168 -1.1374 2.8483 14 6 8.3156 -2.2644 4.6810 15 7 7.6322 -2.8966 5.5990 16 14 10.1772 -2.1684 4.8027 17 1 10.7100 -1.4033 3.6469 18 1 10.5562 -1.4858 6.0659 19 1 10.7453 -3.5404 4.7918 20 6 5.5821 -1.1284 2.4325 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 -1.5953 -1.2328 25 1 1.7515 -1.7715 1.2057 26 1 1.6053 -0.2616 2.1370 27 1 3.9824 -0.1429 0.6163 28 1 2.4409 -1.9770 3.3469 29 1 3.7119 -3.0027 5.1863 30 1 8.0918 -3.3155 6.3434 31 1 6.1411 -0.6082 1.6687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307078643.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:17 Heat of formation + Delta-G solvation = -48.284175 kcal Electronic energy + Delta-G solvation = -14510.926968 eV Core-core repulsion = 11983.772527 eV Total energy + Delta-G solvation = -2527.154441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21194 -38.88503 -36.41328 -35.09174 -32.50440 -31.78359 -30.26783 -27.77357 -26.32713 -23.67133 -22.70655 -22.19707 -19.39396 -17.89531 -17.53696 -16.93156 -16.56842 -16.28560 -15.88612 -15.06522 -14.87305 -14.58393 -14.37909 -14.00835 -13.71593 -13.26146 -12.94554 -12.84889 -12.76890 -12.58387 -12.13111 -11.79853 -11.57157 -11.44150 -11.05903 -10.94875 -9.53475 -9.41703 -8.34942 -8.23606 -6.49792 0.97034 1.39712 1.41553 1.57391 1.59229 2.25450 2.64790 2.91150 3.49855 3.76969 4.04097 4.11529 4.22260 4.29903 4.62237 4.63650 4.71156 4.85002 4.87505 5.06805 5.14280 5.22935 5.24873 5.41340 5.70231 5.72398 5.88742 6.30797 6.61627 6.75991 6.85097 6.98631 7.11069 8.32357 8.51747 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060437 B = 0.005633 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.184030 B = 4969.245655 C = 5341.505323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.099 0.901 4 O -0.578 6.578 5 C 0.100 3.900 6 N -0.741 5.741 7 C 0.260 3.740 8 C -0.367 4.367 9 C 0.131 3.869 10 N -0.546 5.546 11 C 0.250 3.750 12 C -0.475 4.475 13 H 0.082 0.918 14 C 0.025 3.975 15 N -0.757 5.757 16 Si 0.988 3.012 17 H -0.256 1.256 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.371 4.371 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.388 0.612 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.397 0.603 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.278 0.722 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 3.292 -7.341 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.117 0.883 4 O -0.385 6.385 5 C -0.025 4.025 6 N -0.373 5.373 7 C 0.151 3.849 8 C -0.395 4.395 9 C -0.035 4.035 10 N -0.261 5.261 11 C 0.126 3.874 12 C -0.506 4.506 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.379 5.379 16 Si 0.808 3.192 17 H -0.180 1.180 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.398 4.398 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.237 0.763 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.484 3.344 -6.561 12.007 hybrid contribution 0.168 -0.020 -0.560 0.585 sum -9.315 3.325 -7.121 12.188 Atomic orbital electron populations 1.22352 0.93342 1.03758 1.03708 1.22106 0.94836 0.96291 0.82796 0.88342 1.86558 1.77908 1.30316 1.43745 1.22108 0.80399 1.00671 0.99304 1.44368 1.05909 1.61264 1.25760 1.17758 0.90489 0.89250 0.87355 1.21092 0.99419 1.17153 1.01809 1.22762 0.91330 0.93984 0.95396 1.68712 1.06671 1.22394 1.28349 1.18784 0.94366 0.87195 0.87103 1.19965 0.91151 1.31156 1.08333 0.89942 1.26999 1.05668 0.92882 0.94067 1.70264 1.38849 1.21252 1.07536 0.85091 0.75591 0.79145 0.79390 1.17979 1.18927 1.18952 1.21246 0.93025 1.19619 1.05884 0.90455 0.90867 0.91071 0.76272 0.92326 0.91771 0.76836 0.86025 0.84515 0.91165 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.53 71.98 0.69 -1.71 16 2 C 0.10 1.95 3.62 30.59 0.11 2.06 16 3 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 4 O -0.58 -12.64 13.29 -148.98 -1.98 -14.62 16 5 C 0.10 2.55 4.58 86.38 0.40 2.95 16 6 N -0.74 -25.78 5.67 -338.98 -1.92 -27.70 16 7 C 0.26 11.83 6.69 38.51 0.26 12.09 16 8 C -0.37 -16.50 9.40 22.68 0.21 -16.29 16 9 C 0.13 6.59 11.17 84.79 0.95 7.54 16 10 N -0.55 -32.09 7.86 -189.37 -1.49 -33.57 16 11 C 0.25 14.74 6.55 40.18 0.26 15.01 16 12 C -0.47 -27.37 9.14 23.50 0.21 -27.15 16 13 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 14 C 0.03 1.34 5.50 85.29 0.47 1.81 16 15 N -0.76 -42.63 11.46 21.83 0.25 -42.38 16 16 Si 0.99 39.73 29.56 68.60 2.03 41.76 16 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 C -0.37 -19.47 9.72 22.99 0.22 -19.25 16 21 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.39 6.10 9.05 -74.05 -0.67 5.43 16 25 H 0.06 1.48 7.99 -2.38 -0.02 1.46 16 26 H 0.06 1.63 7.99 -2.39 -0.02 1.61 16 27 H 0.40 13.26 8.50 -92.71 -0.79 12.47 16 28 H 0.12 4.61 6.87 -2.91 -0.02 4.59 16 29 H 0.14 6.05 8.06 -2.91 -0.02 6.03 16 30 H 0.28 14.01 8.29 -92.71 -0.77 13.25 16 31 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -69.20 270.27 0.36 -68.84 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.31 Total: 30.64 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 3.78 Total: -22.96 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -3.16 Total: -103.66 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.98 Total: -14.62 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -69.20 0.36 -68.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307078643.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.555 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds