Wall clock time and date at job start Mon Mar 30 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47183 * 2 1 4 4 C 1.52999 * 109.47570 * 239.99970 * 2 1 3 5 5 O 1.42900 * 109.46522 * 305.00069 * 4 2 1 6 6 N 1.46506 * 109.47187 * 119.99522 * 2 1 3 7 7 C 1.39243 * 119.99898 * 275.00593 * 6 2 1 8 8 C 1.39709 * 120.78585 * 359.97438 * 7 6 2 9 9 C 1.38453 * 119.47361 * 180.02562 * 8 7 6 10 10 N 1.31537 * 121.10386 * 0.02562 * 9 8 7 11 11 C 1.33696 * 121.70319 * 0.02562 * 10 9 8 12 12 C 1.41448 * 119.79811 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00333 * 187.07392 * 12 11 10 14 14 C 1.40007 * 120.00341 * 7.07543 * 12 11 10 15 15 N 1.30742 * 120.00611 * 182.54825 * 14 12 11 16 16 Si 1.86805 * 119.99728 * 2.54021 * 14 12 11 17 17 H 1.48500 * 109.46971 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47204 * 300.00376 * 16 14 12 19 19 H 1.48504 * 109.46850 * 60.00368 * 16 14 12 20 20 C 1.39025 * 120.77999 * 180.29688 * 7 6 2 21 21 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47361 * 300.00221 * 1 2 3 23 23 H 1.09004 * 109.46649 * 60.00411 * 1 2 3 24 24 H 1.08995 * 109.46990 * 64.99768 * 4 2 1 25 25 H 1.08999 * 109.47326 * 185.00045 * 4 2 1 26 26 H 0.96706 * 113.99865 * 180.02562 * 5 4 2 27 27 H 0.96994 * 119.99324 * 95.00165 * 6 2 1 28 28 H 1.07998 * 120.26358 * 0.04838 * 8 7 6 29 29 H 1.07998 * 119.45209 * 180.02562 * 9 8 7 30 30 H 0.97010 * 119.99796 * 354.84253 * 15 14 12 31 31 H 1.08003 * 120.56317 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4703 -2.0303 -1.3093 6 7 2.0184 -0.6905 1.1963 7 6 2.1512 0.0042 2.3957 8 6 1.8241 1.3600 2.4767 9 6 1.9671 2.0244 3.6830 10 7 2.4065 1.4005 4.7544 11 6 2.7336 0.1044 4.7282 12 6 3.2025 -0.5262 5.9043 13 1 3.5752 -1.5390 5.8622 14 6 3.1835 0.1625 7.1231 15 7 3.6627 -0.4020 8.2006 16 14 2.4735 1.8882 7.2098 17 1 2.5711 2.3943 8.6025 18 1 3.2366 2.7836 6.3036 19 1 1.0487 1.8588 6.7921 20 6 2.6189 -0.6334 3.5392 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.7518 -0.1583 -2.1369 25 1 3.1264 -0.7994 -1.2055 26 1 1.7507 -2.5464 -2.0775 27 1 2.2491 -1.6316 1.1527 28 1 1.4622 1.8856 1.6055 29 1 1.7138 3.0723 3.7454 30 1 3.9626 -1.3241 8.1726 31 1 2.8863 -1.6796 3.5142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307136889.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:36 Heat of formation + Delta-G solvation = -38.024721 kcal Electronic energy + Delta-G solvation = -14812.325305 eV Core-core repulsion = 12285.615747 eV Total energy + Delta-G solvation = -2526.709558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.90931 -37.62658 -35.38507 -33.53069 -31.57287 -30.23298 -28.12375 -26.35554 -25.38345 -21.96069 -21.56551 -19.85996 -18.39845 -17.62879 -16.19049 -15.93315 -14.94645 -14.46214 -14.30686 -14.03284 -13.36511 -13.08925 -12.80210 -12.56973 -12.34816 -12.00081 -11.95567 -11.52381 -10.87400 -10.66885 -10.43829 -10.19829 -10.07232 -9.71969 -9.47484 -9.18018 -7.87165 -7.56167 -7.11919 -6.92602 -4.69690 2.68926 2.91723 3.71730 3.80417 3.89095 4.14022 4.16810 4.57434 4.76728 4.87453 5.06586 5.21937 5.48052 5.62894 5.71789 5.78325 5.86762 6.07628 6.24009 6.41147 6.49518 6.70994 6.91358 7.24615 7.36994 7.40643 7.43748 7.55776 8.12115 8.19109 8.33704 8.55053 8.78605 9.66242 10.11635 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.053722 B = 0.006908 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.073059 B = 4052.267430 C = 4426.291896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.087 0.913 4 C 0.068 3.932 5 O -0.568 6.568 6 N -0.742 5.742 7 C 0.270 3.730 8 C -0.368 4.368 9 C 0.176 3.824 10 N -0.596 5.596 11 C 0.277 3.723 12 C -0.478 4.478 13 H 0.078 0.922 14 C 0.044 3.956 15 N -0.811 5.811 16 Si 1.159 2.841 17 H -0.337 1.337 18 H -0.280 1.280 19 H -0.295 1.295 20 C -0.337 4.337 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.376 0.624 27 H 0.396 0.604 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.281 0.719 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 0.467 -16.093 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.105 0.895 4 C -0.010 4.010 5 O -0.373 6.373 6 N -0.374 5.374 7 C 0.164 3.836 8 C -0.396 4.396 9 C 0.014 3.986 10 N -0.317 5.317 11 C 0.155 3.845 12 C -0.509 4.509 13 H 0.096 0.904 14 C -0.176 4.176 15 N -0.433 5.433 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.208 1.208 19 H -0.223 1.223 20 C -0.364 4.364 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.223 0.777 27 H 0.230 0.770 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.668 2.323 -13.828 14.493 hybrid contribution 0.599 -2.602 -2.568 3.705 sum -3.068 -0.279 -16.396 16.683 Atomic orbital electron populations 1.22168 0.95871 1.02589 1.01456 1.20841 0.94339 0.96118 0.83827 0.89487 1.22521 0.96832 0.84074 0.97587 1.86533 1.72864 1.27377 1.50481 1.44433 1.74059 1.12026 1.06880 1.17747 0.89999 0.91039 0.84857 1.20713 1.25048 0.94264 0.99599 1.21875 0.90599 0.97843 0.88265 1.66472 1.25195 1.10582 1.29435 1.18366 0.86865 0.87040 0.92217 1.20731 1.36015 1.01406 0.92797 0.90420 1.27838 0.90867 1.08137 0.90805 1.70667 1.26706 1.14780 1.31102 0.81738 0.77042 0.71712 0.70038 1.27080 1.20754 1.22304 1.20986 1.21840 1.00012 0.93543 0.91900 0.92009 0.92891 0.92761 0.93171 0.77748 0.77012 0.88008 0.85674 0.90827 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.27 37.16 0.34 -1.83 16 2 C 0.15 2.11 2.69 -67.93 -0.18 1.93 16 3 H 0.09 1.18 6.54 -51.92 -0.34 0.84 16 4 C 0.07 0.71 6.79 37.16 0.25 0.96 16 5 O -0.57 -6.00 12.51 -35.23 -0.44 -6.44 16 6 N -0.74 -12.75 5.22 -52.03 -0.27 -13.03 16 7 C 0.27 5.79 6.67 -83.65 -0.56 5.23 16 8 C -0.37 -7.68 8.97 -38.95 -0.35 -8.03 16 9 C 0.18 3.99 11.17 -17.60 -0.20 3.79 16 10 N -0.60 -15.67 4.55 -11.21 -0.05 -15.72 16 11 C 0.28 7.57 6.39 -85.02 -0.54 7.03 16 12 C -0.48 -13.66 9.58 -37.70 -0.36 -14.03 16 13 H 0.08 2.22 8.05 -52.48 -0.42 1.80 16 14 C 0.04 1.24 5.52 -17.35 -0.10 1.15 16 15 N -0.81 -22.97 13.65 55.55 0.76 -22.21 16 16 Si 1.16 29.64 25.56 -169.99 -4.34 25.29 16 17 H -0.34 -8.47 7.11 56.52 0.40 -8.07 16 18 H -0.28 -7.09 6.67 56.52 0.38 -6.72 16 19 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 20 C -0.34 -8.29 9.72 -38.47 -0.37 -8.66 16 21 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 22 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.38 2.17 9.12 45.56 0.42 2.58 16 27 H 0.40 6.60 8.41 -40.82 -0.34 6.26 16 28 H 0.10 1.82 6.33 -52.49 -0.33 1.49 16 29 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.28 7.62 8.72 -40.82 -0.36 7.26 16 31 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 262.22 15.07 3.95 3.95 Total: -1.00 -31.54 262.22 -5.57 -37.11 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.11 Total: 3.50 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.06 Total: -12.45 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.44 Total: -50.96 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.44 Total: -6.44 kcal Atomic # 14 Polarization: 29.64 SS G_CDS: -4.34 Total: 25.29 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.54 -5.57 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307136889.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.915 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds