Wall clock time and date at job start Mon Mar 30 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47183 * 2 1 4 4 C 1.52999 * 109.47570 * 239.99970 * 2 1 3 5 5 O 1.42900 * 109.46522 * 305.00069 * 4 2 1 6 6 N 1.46506 * 109.47187 * 119.99522 * 2 1 3 7 7 C 1.39243 * 119.99898 * 275.00593 * 6 2 1 8 8 C 1.39709 * 120.78585 * 359.97438 * 7 6 2 9 9 C 1.38453 * 119.47361 * 180.02562 * 8 7 6 10 10 N 1.31537 * 121.10386 * 0.02562 * 9 8 7 11 11 C 1.33696 * 121.70319 * 0.02562 * 10 9 8 12 12 C 1.41448 * 119.79811 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00333 * 187.07392 * 12 11 10 14 14 C 1.40007 * 120.00341 * 7.07543 * 12 11 10 15 15 N 1.30742 * 120.00611 * 182.54825 * 14 12 11 16 16 Si 1.86805 * 119.99728 * 2.54021 * 14 12 11 17 17 H 1.48500 * 109.46971 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47204 * 300.00376 * 16 14 12 19 19 H 1.48504 * 109.46850 * 60.00368 * 16 14 12 20 20 C 1.39025 * 120.77999 * 180.29688 * 7 6 2 21 21 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47361 * 300.00221 * 1 2 3 23 23 H 1.09004 * 109.46649 * 60.00411 * 1 2 3 24 24 H 1.08995 * 109.46990 * 64.99768 * 4 2 1 25 25 H 1.08999 * 109.47326 * 185.00045 * 4 2 1 26 26 H 0.96706 * 113.99865 * 180.02562 * 5 4 2 27 27 H 0.96994 * 119.99324 * 95.00165 * 6 2 1 28 28 H 1.07998 * 120.26358 * 0.04838 * 8 7 6 29 29 H 1.07998 * 119.45209 * 180.02562 * 9 8 7 30 30 H 0.97010 * 119.99796 * 354.84253 * 15 14 12 31 31 H 1.08003 * 120.56317 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.4703 -2.0303 -1.3093 6 7 2.0184 -0.6905 1.1963 7 6 2.1512 0.0042 2.3957 8 6 1.8241 1.3600 2.4767 9 6 1.9671 2.0244 3.6830 10 7 2.4065 1.4005 4.7544 11 6 2.7336 0.1044 4.7282 12 6 3.2025 -0.5262 5.9043 13 1 3.5752 -1.5390 5.8622 14 6 3.1835 0.1625 7.1231 15 7 3.6627 -0.4020 8.2006 16 14 2.4735 1.8882 7.2098 17 1 2.5711 2.3943 8.6025 18 1 3.2366 2.7836 6.3036 19 1 1.0487 1.8588 6.7921 20 6 2.6189 -0.6334 3.5392 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 1.7518 -0.1583 -2.1369 25 1 3.1264 -0.7994 -1.2055 26 1 1.7507 -2.5464 -2.0775 27 1 2.2491 -1.6316 1.1527 28 1 1.4622 1.8856 1.6055 29 1 1.7138 3.0723 3.7454 30 1 3.9626 -1.3241 8.1726 31 1 2.8863 -1.6796 3.5142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307136889.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:36 Heat of formation + Delta-G solvation = -62.201537 kcal Electronic energy + Delta-G solvation = -14813.373690 eV Core-core repulsion = 12285.615747 eV Total energy + Delta-G solvation = -2527.757943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61066 -38.79245 -36.65385 -35.50111 -32.97684 -32.15103 -29.68019 -27.35068 -27.26943 -23.74265 -23.11653 -21.32959 -20.30664 -18.59340 -17.75371 -17.41753 -16.44284 -16.10702 -15.77541 -15.45885 -14.72558 -14.67201 -14.41463 -14.34678 -13.97169 -13.60063 -13.40827 -12.81708 -12.46813 -12.16917 -11.99615 -11.82780 -11.54436 -11.36493 -11.22807 -10.93910 -9.82042 -9.57073 -9.17162 -8.52649 -6.80118 0.78426 1.07117 1.65840 1.80391 2.12438 2.52842 2.57967 2.74515 3.41274 3.69114 3.92044 4.06252 4.16403 4.37010 4.54085 4.57514 4.63004 4.73094 4.83030 4.93372 4.96366 5.15233 5.39421 5.41443 5.51242 5.52963 5.64832 6.06916 6.29828 6.65124 6.74653 6.89800 6.93789 7.73659 8.00968 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.053722 B = 0.006908 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.073059 B = 4052.267430 C = 4426.291896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.096 0.904 4 C 0.075 3.925 5 O -0.588 6.588 6 N -0.732 5.732 7 C 0.279 3.721 8 C -0.346 4.346 9 C 0.160 3.840 10 N -0.620 5.620 11 C 0.264 3.736 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.015 3.985 15 N -0.838 5.838 16 Si 1.196 2.804 17 H -0.334 1.334 18 H -0.276 1.276 19 H -0.297 1.297 20 C -0.361 4.361 21 H 0.049 0.951 22 H 0.042 0.958 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.397 0.603 27 H 0.398 0.602 28 H 0.142 0.858 29 H 0.164 0.836 30 H 0.277 0.723 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 2.008 -19.570 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.114 0.886 4 C -0.003 4.003 5 O -0.397 6.397 6 N -0.361 5.361 7 C 0.169 3.831 8 C -0.373 4.373 9 C 0.000 4.000 10 N -0.343 5.343 11 C 0.141 3.859 12 C -0.552 4.552 13 H 0.074 0.926 14 C -0.200 4.200 15 N -0.461 5.461 16 Si 1.029 2.971 17 H -0.269 1.269 18 H -0.204 1.204 19 H -0.225 1.225 20 C -0.387 4.387 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.247 0.753 27 H 0.232 0.768 28 H 0.159 0.841 29 H 0.181 0.819 30 H 0.087 0.913 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.735 3.846 -17.384 18.423 hybrid contribution 0.829 -3.099 -1.882 3.720 sum -3.906 0.747 -19.266 19.673 Atomic orbital electron populations 1.22097 0.95425 1.01925 1.02020 1.21239 0.94634 0.96819 0.83516 0.88586 1.22440 0.96814 0.84277 0.96819 1.86476 1.73226 1.27791 1.52210 1.44647 1.72608 1.12229 1.06659 1.17843 0.88253 0.91570 0.85425 1.21154 1.22079 0.93790 1.00319 1.22597 0.89797 0.99631 0.87953 1.66406 1.26363 1.10139 1.31387 1.18466 0.86947 0.87969 0.92534 1.20698 1.39151 1.01092 0.94220 0.92639 1.28626 0.90748 1.10017 0.90621 1.70690 1.29147 1.14882 1.31418 0.81247 0.76331 0.69567 0.69960 1.26867 1.20350 1.22541 1.21045 1.23285 1.00050 0.94349 0.93203 0.93909 0.89840 0.89531 0.92871 0.75267 0.76771 0.84051 0.81853 0.91286 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.27 71.98 0.67 -2.89 16 2 C 0.14 3.27 2.69 44.99 0.12 3.39 16 3 H 0.10 2.08 6.54 -2.38 -0.02 2.06 16 4 C 0.07 1.21 6.79 71.98 0.49 1.70 16 5 O -0.59 -10.27 12.51 -148.98 -1.86 -12.14 16 6 N -0.73 -23.02 5.22 -318.53 -1.66 -24.69 16 7 C 0.28 11.32 6.67 38.51 0.26 11.58 16 8 C -0.35 -13.09 8.97 22.68 0.20 -12.89 16 9 C 0.16 6.73 11.17 84.79 0.95 7.68 16 10 N -0.62 -32.06 4.55 -189.37 -0.86 -32.92 16 11 C 0.26 14.64 6.39 40.18 0.26 14.90 16 12 C -0.52 -31.06 9.58 23.49 0.23 -30.84 16 13 H 0.06 3.41 8.05 -2.91 -0.02 3.39 16 14 C 0.01 0.87 5.52 85.28 0.47 1.34 16 15 N -0.84 -49.46 13.65 21.83 0.30 -49.16 16 16 Si 1.20 60.92 25.56 68.60 1.75 62.67 16 17 H -0.33 -16.61 7.11 99.48 0.71 -15.90 16 18 H -0.28 -13.68 6.67 99.48 0.66 -13.02 16 19 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 20 C -0.36 -17.76 9.72 22.99 0.22 -17.53 16 21 H 0.05 1.27 7.56 -2.39 -0.02 1.25 16 22 H 0.04 1.13 7.82 -2.39 -0.02 1.11 16 23 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.40 3.12 9.12 -74.05 -0.68 2.44 16 27 H 0.40 12.41 8.41 -92.71 -0.78 11.63 16 28 H 0.14 4.24 6.33 -2.91 -0.02 4.22 16 29 H 0.16 5.53 8.06 -2.91 -0.02 5.51 16 30 H 0.28 15.89 8.72 -92.70 -0.81 15.08 16 31 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -69.79 262.22 1.14 -68.66 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.39 Total: 11.15 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.86 Total: -23.56 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -2.23 Total: -106.77 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.86 Total: -12.14 kcal Atomic # 14 Polarization: 60.92 SS G_CDS: 1.75 Total: 62.67 kcal Total: -69.79 1.14 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307136889.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.454 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds