Wall clock time and date at job start Mon Mar 30 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34955 * 126.03528 * 2 1 4 4 C 1.35319 * 107.74422 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.03762 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.86704 * 339.55021 * 5 4 3 7 7 C 1.54097 * 110.00349 * 100.63983 * 5 4 3 8 8 C 1.54818 * 104.18808 * 121.52512 * 7 5 4 9 9 C 1.55000 * 102.09030 * 20.87976 * 8 7 5 10 10 H 1.08997 * 110.62057 * 81.47966 * 9 8 7 11 11 C 1.50700 * 110.61448 * 204.48157 * 9 8 7 12 12 H 1.07999 * 120.00266 * 355.51477 * 11 9 8 13 13 C 1.37877 * 119.99965 * 175.52711 * 11 9 8 14 14 N 1.31514 * 120.00230 * 179.97438 * 13 11 9 15 15 Si 1.86802 * 119.99866 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.46823 * 90.00521 * 15 13 11 17 17 H 1.48504 * 109.47006 * 210.00472 * 15 13 11 18 18 H 1.48500 * 109.47327 * 330.00178 * 15 13 11 19 19 O 1.43745 * 109.87689 * 218.54592 * 5 4 3 20 20 C 1.39864 * 107.92107 * 0.26417 * 4 3 2 21 21 N 1.30839 * 108.20390 * 359.55750 * 20 4 3 22 22 H 1.09004 * 109.47580 * 89.99858 * 1 2 3 23 23 H 1.09003 * 109.47122 * 209.99774 * 1 2 3 24 24 H 1.09000 * 109.47546 * 329.99601 * 1 2 3 25 25 H 1.07996 * 126.12739 * 0.02562 * 3 2 1 26 26 H 1.09004 * 110.48577 * 240.19793 * 7 5 4 27 27 H 1.08997 * 110.49107 * 2.84684 * 7 5 4 28 28 H 1.08996 * 110.90598 * 139.07645 * 8 7 5 29 29 H 1.09001 * 110.90139 * 262.64748 * 8 7 5 30 30 H 0.97001 * 120.00439 * 180.02562 * 14 13 11 31 31 H 1.08002 * 125.89947 * 179.73782 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7679 1.5454 -0.0002 6 1 4.5086 2.5420 -0.3577 7 6 5.3523 1.6346 1.4228 8 6 6.7996 1.1057 1.2725 9 6 7.0564 1.2895 -0.2450 10 1 7.3379 2.3193 -0.4648 11 6 8.1192 0.3338 -0.7228 12 1 8.6338 -0.2993 -0.0152 13 6 8.4348 0.2679 -2.0633 14 7 9.3626 -0.5657 -2.4803 15 14 7.5445 1.3627 -3.2874 16 1 8.2805 2.6444 -3.4317 17 1 7.4767 0.6798 -4.6043 18 1 6.1686 1.6343 -2.7992 19 8 5.7813 0.9721 -0.8432 20 6 3.5346 -0.7320 -0.0071 21 7 2.2891 -1.1327 -0.0007 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.9280 2.1194 0.0004 26 1 5.3579 2.6683 1.7688 27 1 4.7853 1.0049 2.1083 28 1 7.4955 1.7045 1.8600 29 1 6.8605 0.0543 1.5534 30 1 9.5849 -0.6118 -3.4234 31 1 4.4054 -1.3709 -0.0131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307173532.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:30 Heat of formation + Delta-G solvation = 14.780895 kcal Electronic energy + Delta-G solvation = -15143.571293 eV Core-core repulsion = 12619.151558 eV Total energy + Delta-G solvation = -2524.419734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13243 -39.80178 -34.86589 -34.09520 -32.73066 -32.11921 -29.88563 -27.67391 -25.86044 -23.06958 -22.12936 -21.66102 -20.86279 -18.98871 -17.86313 -17.12595 -16.47753 -16.20004 -15.82204 -15.29252 -15.01734 -14.68481 -14.24407 -13.78666 -13.59037 -13.56622 -13.22355 -12.83691 -12.53253 -12.20714 -11.99706 -11.87394 -11.59576 -11.26304 -11.18833 -10.71239 -10.31041 -10.07792 -9.22997 -8.31700 -6.43596 0.96147 1.38778 1.42860 1.72133 1.75397 1.82378 2.46241 2.99567 3.55044 3.83491 4.01285 4.08575 4.23229 4.28889 4.44478 4.47875 4.55521 4.64424 4.71908 4.79691 4.90795 5.03338 5.13071 5.24812 5.41813 5.52050 5.59002 5.67691 6.21073 6.25557 6.51309 6.73011 6.79866 7.32777 8.82662 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036110 B = 0.008401 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.224632 B = 3332.049178 C = 3597.935367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 C 0.073 3.927 4 C -0.250 4.250 5 C 0.137 3.863 6 H 0.077 0.923 7 C -0.129 4.129 8 C -0.133 4.133 9 C 0.168 3.832 10 H 0.034 0.966 11 C -0.526 4.526 12 H 0.040 0.960 13 C 0.024 3.976 14 N -0.943 5.943 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.299 1.299 18 H -0.210 1.210 19 O -0.393 6.393 20 C 0.054 3.946 21 N -0.338 5.338 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.218 0.782 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.266 0.734 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 8.375 6.509 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.162 5.162 3 C -0.074 4.074 4 C -0.262 4.262 5 C 0.078 3.922 6 H 0.095 0.905 7 C -0.167 4.167 8 C -0.170 4.170 9 C 0.112 3.888 10 H 0.051 0.949 11 C -0.564 4.564 12 H 0.058 0.942 13 C -0.175 4.175 14 N -0.583 5.583 15 Si 0.759 3.241 16 H -0.198 1.198 17 H -0.225 1.225 18 H -0.132 1.132 19 O -0.314 6.314 20 C -0.131 4.131 21 N -0.160 5.160 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.140 0.860 25 H 0.235 0.765 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.867 7.173 6.204 22.015 hybrid contribution 1.056 0.396 -0.668 1.310 sum -18.811 7.569 5.536 21.019 Atomic orbital electron populations 1.22213 0.71618 1.06145 1.04539 1.48846 1.08008 1.03190 1.56194 1.22742 0.89418 0.94840 1.00427 1.20270 0.95037 0.93807 1.17080 1.20931 0.86252 0.94261 0.90771 0.90536 1.22896 0.94822 1.02545 0.96440 1.22932 0.96825 1.00680 0.96612 1.20954 0.82170 0.94783 0.90878 0.94855 1.21250 1.17999 1.23495 0.93614 0.94209 1.25953 0.94454 0.96264 1.00784 1.70064 1.33127 1.38762 1.16331 0.85990 0.82905 0.78446 0.76794 1.19768 1.22549 1.13194 1.89224 1.15999 1.77871 1.48303 1.23667 0.94634 0.95870 0.98930 1.77261 1.01975 1.09989 1.26820 0.89822 0.89312 0.86006 0.76547 0.88555 0.90884 0.90158 0.93240 0.92523 0.81941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 11.47 127.77 1.47 2.71 16 2 N -0.38 -9.58 4.01 -369.57 -1.48 -11.06 16 3 C 0.07 1.76 11.40 83.54 0.95 2.71 16 4 C -0.25 -8.22 4.92 -20.14 -0.10 -8.32 16 5 C 0.14 4.74 3.86 30.22 0.12 4.85 16 6 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 7 C -0.13 -3.95 6.64 31.59 0.21 -3.74 16 8 C -0.13 -5.15 6.55 31.90 0.21 -4.94 16 9 C 0.17 7.98 2.54 30.53 0.08 8.06 16 10 H 0.03 1.54 7.69 -2.39 -0.02 1.53 16 11 C -0.53 -31.16 9.41 25.60 0.24 -30.91 16 12 H 0.04 2.58 8.02 -2.91 -0.02 2.55 16 13 C 0.02 1.48 5.47 84.65 0.46 1.94 16 14 N -0.94 -60.93 13.96 21.45 0.30 -60.63 16 15 Si 0.93 46.64 27.11 68.60 1.86 48.50 16 16 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 17 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 18 H -0.21 -9.99 5.37 99.48 0.53 -9.46 16 19 O -0.39 -18.27 7.68 -148.98 -1.14 -19.42 16 20 C 0.05 2.01 11.70 85.23 1.00 3.01 16 21 N -0.34 -11.65 12.58 -57.02 -0.72 -12.36 16 22 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 26 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.13 7.70 -2.39 -0.02 2.11 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.05 2.08 8.05 -2.39 -0.02 2.06 16 30 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.16 6.60 8.06 -2.91 -0.02 6.57 16 Total: -1.00 -76.69 263.63 4.38 -72.31 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.93 Total: 7.28 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.63 Total: -24.61 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.90 Total: -84.06 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.14 Total: -19.42 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.86 Total: 48.50 kcal Total: -76.69 4.38 -72.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307173532.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.092 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds