Wall clock time and date at job start Mon Mar 30 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03518 * 2 1 4 4 C 1.35315 * 107.74580 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.04388 * 179.73639 * 4 3 2 6 6 H 1.09000 * 110.33093 * 27.25616 * 5 4 3 7 7 C 1.54486 * 110.37453 * 265.00350 * 5 4 3 8 8 C 1.54507 * 104.06431 * 217.18764 * 7 5 4 9 9 C 1.54479 * 104.06162 * 359.97438 * 8 7 5 10 10 H 1.08999 * 110.37550 * 265.14419 * 9 8 7 11 11 C 1.50701 * 110.37380 * 142.80977 * 9 8 7 12 12 H 1.08005 * 119.99532 * 359.97438 * 11 9 8 13 13 C 1.37877 * 120.00681 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99339 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00434 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46875 * 60.00199 * 15 13 11 17 17 H 1.48496 * 109.47411 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47290 * 300.00678 * 15 13 11 19 19 O 1.44423 * 110.37639 * 149.61965 * 5 4 3 20 20 C 1.39870 * 107.92072 * 0.02562 * 4 3 2 21 21 N 1.30839 * 108.20307 * 359.97438 * 20 4 3 22 22 H 1.08992 * 109.47485 * 89.99681 * 1 2 3 23 23 H 1.09007 * 109.46799 * 209.99867 * 1 2 3 24 24 H 1.08995 * 109.47116 * 329.99333 * 1 2 3 25 25 H 1.07999 * 126.13213 * 0.02562 * 3 2 1 26 26 H 1.08992 * 110.51149 * 335.83797 * 7 5 4 27 27 H 1.09002 * 110.50968 * 98.54365 * 7 5 4 28 28 H 1.08992 * 110.51387 * 118.64382 * 8 7 5 29 29 H 1.08998 * 110.51015 * 241.35954 * 8 7 5 30 30 H 0.97001 * 119.99836 * 179.97438 * 14 13 11 31 31 H 1.08001 * 125.90246 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7679 1.5452 -0.0064 6 1 4.5467 2.5061 0.4582 7 6 5.2758 1.7504 -1.4509 8 6 6.8146 1.7512 -1.3113 9 6 7.0543 1.5470 0.2011 10 1 7.1856 2.5084 0.6977 11 6 8.2584 0.6695 0.4276 12 1 8.8123 0.2844 -0.4158 13 6 8.6531 0.3583 1.7115 14 7 7.9783 0.8269 2.7385 15 14 10.1451 -0.7299 1.9923 16 1 11.3441 -0.0900 1.3936 17 1 10.3572 -0.9127 3.4506 18 1 9.9200 -2.0525 1.3556 19 8 5.8587 0.8923 0.6790 20 6 3.5346 -0.7321 -0.0015 21 7 2.2891 -1.1328 -0.0010 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.9281 2.1193 0.0004 26 1 4.9507 0.9298 -2.0902 27 1 4.9277 2.7047 -1.8461 28 1 7.2502 0.9309 -1.8815 29 1 7.2272 2.7059 -1.6375 30 1 8.2557 0.6077 3.6418 31 1 4.4054 -1.3711 -0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307173534.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:32 Heat of formation + Delta-G solvation = 10.049109 kcal Electronic energy + Delta-G solvation = -14997.054909 eV Core-core repulsion = 12472.429989 eV Total energy + Delta-G solvation = -2524.624920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.11212 -39.59416 -34.85537 -34.04471 -32.56599 -31.96670 -29.59234 -27.62699 -25.87475 -23.32236 -22.03953 -21.61210 -20.82990 -18.76557 -17.71186 -16.83207 -16.43682 -16.18667 -15.72198 -15.53956 -15.05881 -14.25609 -14.11603 -13.73481 -13.56971 -13.49038 -13.21534 -12.78798 -12.42664 -12.25320 -12.16944 -11.90741 -11.63064 -11.19059 -11.00225 -10.68432 -10.30112 -10.02103 -9.21898 -8.13600 -6.33332 0.95292 1.41899 1.45539 1.52792 1.74779 1.82869 2.42934 3.09943 3.57686 3.91645 4.10373 4.14125 4.23580 4.34570 4.46111 4.49119 4.57802 4.72148 4.74691 4.88423 4.96267 5.06705 5.14543 5.29914 5.43253 5.57649 5.67212 5.77696 6.20467 6.20945 6.60945 6.74732 7.00068 7.41944 8.94990 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040985 B = 0.007188 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.018023 B = 3894.589336 C = 4240.577222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.379 5.379 3 C 0.071 3.929 4 C -0.244 4.244 5 C 0.134 3.866 6 H 0.058 0.942 7 C -0.127 4.127 8 C -0.140 4.140 9 C 0.196 3.804 10 H -0.004 1.004 11 C -0.550 4.550 12 H 0.065 0.935 13 C 0.021 3.979 14 N -0.905 5.905 15 Si 0.962 3.038 16 H -0.261 1.261 17 H -0.283 1.283 18 H -0.272 1.272 19 O -0.382 6.382 20 C 0.055 3.945 21 N -0.334 5.334 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.216 0.784 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.261 0.739 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 2.809 -6.884 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.161 5.161 3 C -0.076 4.076 4 C -0.255 4.255 5 C 0.075 3.925 6 H 0.076 0.924 7 C -0.165 4.165 8 C -0.177 4.177 9 C 0.141 3.859 10 H 0.013 0.987 11 C -0.588 4.588 12 H 0.083 0.917 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.786 3.214 16 H -0.186 1.186 17 H -0.209 1.209 18 H -0.197 1.197 19 O -0.302 6.302 20 C -0.130 4.130 21 N -0.157 5.157 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.136 0.864 25 H 0.232 0.768 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.504 1.627 -6.545 15.995 hybrid contribution 1.516 0.182 0.414 1.582 sum -12.987 1.809 -6.131 14.475 Atomic orbital electron populations 1.22225 0.71482 1.05983 1.04802 1.48827 1.08016 1.03075 1.56202 1.22660 0.89388 0.94846 1.00702 1.20071 0.94634 0.93902 1.16897 1.21045 0.86134 0.93118 0.92234 0.92435 1.22853 0.94716 1.02486 0.96469 1.22924 0.95967 1.01308 0.97551 1.20418 0.84205 0.91965 0.89347 0.98675 1.21465 1.10975 1.33677 0.92656 0.91695 1.25972 0.99429 0.96672 0.95963 1.70168 1.40562 1.44805 0.98722 0.85580 0.79529 0.79280 0.77039 1.18600 1.20871 1.19676 1.89429 1.15505 1.59115 1.66158 1.23653 0.94703 0.95672 0.98977 1.77236 1.01795 1.09860 1.26813 0.89146 0.89385 0.86417 0.76753 0.91676 0.88890 0.92395 0.90815 0.92981 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.47 127.77 1.47 2.86 16 2 N -0.38 -10.36 4.01 -369.57 -1.48 -11.84 16 3 C 0.07 1.95 11.40 83.54 0.95 2.91 16 4 C -0.24 -8.98 5.10 -20.15 -0.10 -9.08 16 5 C 0.13 5.49 3.75 30.35 0.11 5.60 16 6 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 7 C -0.13 -4.51 6.62 31.61 0.21 -4.30 16 8 C -0.14 -5.84 6.62 31.61 0.21 -5.63 16 9 C 0.20 10.54 3.06 30.35 0.09 10.64 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C -0.55 -32.01 8.77 25.60 0.22 -31.79 16 12 H 0.06 3.62 7.57 -2.91 -0.02 3.60 16 13 C 0.02 1.25 5.43 84.65 0.46 1.71 16 14 N -0.90 -56.28 13.07 21.45 0.28 -56.00 16 15 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 O -0.38 -20.75 10.43 -148.98 -1.55 -22.30 16 20 C 0.05 2.18 11.61 85.24 0.99 3.17 16 21 N -0.33 -12.11 12.58 -57.02 -0.72 -12.83 16 22 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.22 3.73 8.06 -2.91 -0.02 3.70 16 26 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.06 2.45 7.71 -2.39 -0.02 2.43 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.17 7.02 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -74.94 269.35 4.27 -70.66 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.11 Total: 9.04 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 4.61 Total: -23.91 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -1.92 Total: -80.67 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.55 Total: -22.30 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.94 4.27 -70.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307173534.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.714 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds