Wall clock time and date at job start Mon Mar 30 2020 03:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46943 * 2 1 4 4 C 1.35705 * 116.99758 * 184.82570 * 3 2 1 5 5 C 1.38181 * 120.15810 * 354.66382 * 4 3 2 6 6 C 1.38569 * 120.38619 * 179.97438 * 5 4 3 7 7 C 1.38381 * 120.70056 * 0.02562 * 6 5 4 8 8 C 1.38505 * 120.30480 * 359.73856 * 7 6 5 9 9 N 1.38883 * 120.20154 * 180.28376 * 8 7 6 10 10 N 1.36607 * 119.99765 * 0.21214 * 9 8 7 11 11 C 1.41266 * 120.15642 * 174.68015 * 4 3 2 12 12 C 1.40906 * 120.33683 * 359.95657 * 11 4 3 13 13 H 1.08007 * 119.99940 * 226.04276 * 12 11 4 14 14 C 1.39905 * 120.00369 * 46.05469 * 12 11 4 15 15 N 1.30935 * 119.99952 * 199.72484 * 14 12 11 16 16 Si 1.86796 * 119.99739 * 19.43630 * 14 12 11 17 17 H 1.48497 * 109.47562 * 266.00411 * 16 14 12 18 18 H 1.48499 * 109.47406 * 26.00651 * 16 14 12 19 19 H 1.48507 * 109.46915 * 146.00507 * 16 14 12 20 20 H 1.09010 * 109.46855 * 184.77649 * 1 2 3 21 21 H 1.08997 * 109.47170 * 304.77547 * 1 2 3 22 22 H 1.08996 * 109.46925 * 64.78046 * 1 2 3 23 23 H 1.09000 * 109.47206 * 239.99753 * 2 1 3 24 24 H 1.08999 * 109.46922 * 119.99603 * 2 1 3 25 25 H 1.08002 * 119.81064 * 0.02562 * 5 4 3 26 26 H 1.07994 * 119.65149 * 180.02562 * 6 5 4 27 27 H 1.08007 * 119.84630 * 180.02562 * 7 6 5 28 28 H 0.96994 * 120.00157 * 180.21481 * 9 8 7 29 29 H 1.00894 * 110.99740 * 180.02562 * 10 9 8 30 30 H 1.00903 * 110.99522 * 303.95198 * 10 9 8 31 31 H 0.96998 * 120.00097 * 359.71204 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3476 1.5265 -0.1017 5 6 4.1967 0.4364 -0.0885 6 6 5.5670 0.6139 -0.1926 7 6 6.1082 1.8820 -0.3108 8 6 5.2835 2.9946 -0.3320 9 7 5.8286 4.2659 -0.4567 10 7 7.1816 4.4215 -0.5630 11 6 3.8826 2.8285 -0.2213 12 6 3.0295 3.9498 -0.2369 13 1 3.1728 4.7273 -0.9728 14 6 1.9968 4.0563 0.7010 15 7 0.9861 4.8571 0.4739 16 14 2.0561 3.0499 2.2736 17 1 1.3011 1.7858 2.0812 18 1 3.4687 2.7368 2.6081 19 1 1.4456 3.8272 3.3820 20 1 -0.3633 -1.0242 0.0856 21 1 -0.3633 0.5861 0.8441 22 1 -0.3633 0.4379 -0.9297 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7898 -0.5599 0.0027 26 1 6.2195 -0.2465 -0.1813 27 1 7.1782 2.0044 -0.3914 28 1 5.2486 5.0433 -0.4681 29 1 7.4280 5.3964 -0.6460 30 1 7.6572 3.9938 0.2174 31 1 0.9554 5.3797 -0.3427 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307312722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:10 Heat of formation + Delta-G solvation = 8.989478 kcal Electronic energy + Delta-G solvation = -15482.518853 eV Core-core repulsion = 12957.847984 eV Total energy + Delta-G solvation = -2524.670869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.01129 -37.25085 -34.88321 -33.37424 -31.09670 -30.33046 -28.49135 -26.33790 -24.36354 -22.79851 -20.78238 -19.89475 -18.12794 -17.25066 -16.77229 -15.48737 -15.41463 -14.50190 -14.25723 -13.75854 -13.59549 -13.09278 -12.44331 -12.19748 -12.09886 -11.83951 -11.72500 -11.15452 -10.78367 -10.59540 -10.35939 -10.08979 -9.99420 -9.58816 -9.11162 -8.69853 -8.23855 -7.19231 -6.75392 -6.19670 -4.13622 2.70595 2.82729 3.41503 3.52690 3.67099 3.93635 4.36360 4.53978 4.84151 5.37672 5.52877 5.64185 5.74142 5.81401 6.00676 6.05009 6.28793 6.34566 6.40609 6.53893 6.82390 6.85405 7.08296 7.41329 7.57215 7.72115 7.81159 7.98262 8.23009 8.53367 8.67879 8.97011 9.07415 9.24098 10.45903 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.024570 B = 0.014074 C = 0.010267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.324833 B = 1988.986877 C = 2726.519289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.294 6.294 4 C 0.058 3.942 5 C -0.224 4.224 6 C -0.142 4.142 7 C -0.194 4.194 8 C 0.169 3.831 9 N -0.596 5.596 10 N -0.602 5.602 11 C 0.027 3.973 12 C -0.549 4.549 13 H 0.067 0.933 14 C 0.066 3.934 15 N -0.846 5.846 16 Si 1.063 2.937 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.298 1.298 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.404 0.596 29 H 0.342 0.658 30 H 0.318 0.682 31 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -5.317 1.147 6.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.209 6.209 4 C 0.012 3.988 5 C -0.245 4.245 6 C -0.162 4.162 7 C -0.218 4.218 8 C 0.068 3.932 9 N -0.324 5.324 10 N -0.225 5.225 11 C 0.020 3.980 12 C -0.580 4.580 13 H 0.085 0.915 14 C -0.149 4.149 15 N -0.472 5.472 16 Si 0.891 3.109 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.226 1.226 20 H 0.084 0.916 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.243 0.757 29 H 0.154 0.846 30 H 0.133 0.867 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.220 -5.853 1.839 6.929 hybrid contribution 0.796 1.016 -0.667 1.453 sum 4.016 -4.836 1.172 6.395 Atomic orbital electron populations 1.21758 0.94029 1.01430 1.03456 1.22467 0.94971 0.84498 0.99967 1.86163 1.20266 1.25782 1.88661 1.18898 0.81506 0.93276 1.05099 1.20624 0.94304 0.96470 1.13084 1.20067 0.93682 0.95508 1.06914 1.20073 0.97835 0.91656 1.12235 1.17595 0.91293 0.83229 1.01111 1.42840 0.98514 1.06340 1.84730 1.60221 0.95211 1.20383 1.46653 1.16547 0.89433 0.91179 1.00821 1.19736 1.14916 1.06227 1.17155 0.91476 1.26694 0.89739 0.95995 1.02515 1.70588 1.26232 1.22273 1.28110 0.83672 0.77151 0.76515 0.73555 1.18722 1.20537 1.22565 0.91612 0.91568 0.91937 0.93204 0.93525 0.88236 0.88507 0.87968 0.75720 0.84608 0.86738 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 37.16 0.38 -2.04 16 2 C 0.06 1.07 5.21 37.16 0.19 1.26 16 3 O -0.29 -7.10 5.81 -18.82 -0.11 -7.20 16 4 C 0.06 1.44 5.20 -38.45 -0.20 1.24 16 5 C -0.22 -4.95 9.02 -39.48 -0.36 -5.30 16 6 C -0.14 -2.99 10.03 -39.41 -0.40 -3.39 16 7 C -0.19 -4.24 9.33 -39.43 -0.37 -4.61 16 8 C 0.17 4.01 6.72 -83.32 -0.56 3.45 16 9 N -0.60 -12.30 6.56 32.69 0.21 -12.09 16 10 N -0.60 -9.78 9.59 60.35 0.58 -9.20 16 11 C 0.03 0.70 4.62 -106.49 -0.49 0.21 16 12 C -0.55 -15.17 8.16 -37.95 -0.31 -15.48 16 13 H 0.07 1.92 7.65 -52.48 -0.40 1.52 16 14 C 0.07 1.85 4.91 -17.31 -0.08 1.77 16 15 N -0.85 -24.24 13.66 55.55 0.76 -23.48 16 16 Si 1.06 26.39 25.26 -169.99 -4.29 22.10 16 17 H -0.26 -6.17 6.05 56.52 0.34 -5.83 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 20 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 21 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.05 0.86 7.62 -51.93 -0.40 0.47 16 24 H 0.05 0.82 7.71 -51.93 -0.40 0.42 16 25 H 0.10 1.92 6.30 -52.49 -0.33 1.59 16 26 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.10 2.01 7.00 -52.48 -0.37 1.64 16 28 H 0.40 8.39 7.47 -185.16 -1.38 7.01 16 29 H 0.34 4.39 9.21 -181.37 -1.67 2.72 16 30 H 0.32 4.78 8.41 -181.36 -1.53 3.26 16 31 H 0.28 7.79 8.72 -40.82 -0.36 7.44 16 LS Contribution 257.18 15.07 3.88 3.88 Total: -1.00 -30.49 257.18 -8.54 -39.03 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.38 Total: 9.86 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.19 Total: -22.89 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 1.55 Total: -44.77 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.11 Total: -7.20 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -4.29 Total: 22.10 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.49 -8.54 -39.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.018 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds