Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42893 * 109.47203 * 2 1 4 4 C 1.35979 * 117.00054 * 179.97438 * 3 2 1 5 5 C 1.37693 * 120.02733 * 359.72936 * 4 3 2 6 6 C 1.40853 * 119.66722 * 179.80062 * 5 4 3 7 7 C 1.41122 * 120.12976 * 180.19988 * 6 5 4 8 8 H 1.07996 * 120.00523 * 334.69422 * 7 6 5 9 9 C 1.39838 * 119.99649 * 154.69079 * 7 6 5 10 10 N 1.30921 * 120.00242 * 343.15346 * 9 7 6 11 11 Si 1.86807 * 120.00208 * 163.15442 * 9 7 6 12 12 H 1.48504 * 109.46890 * 59.99692 * 11 9 7 13 13 H 1.48490 * 109.47209 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46921 * 300.00271 * 11 9 7 15 15 C 1.40900 * 119.73340 * 0.46954 * 6 5 4 16 16 C 1.36370 * 120.04912 * 359.77900 * 15 6 5 17 17 C 1.39403 * 120.33704 * 359.97438 * 16 15 6 18 18 N 1.39004 * 119.86858 * 180.02562 * 17 16 15 19 19 N 1.36607 * 119.99739 * 0.02562 * 18 17 16 20 20 H 1.09003 * 109.46969 * 60.00255 * 1 2 3 21 21 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46994 * 300.00239 * 1 2 3 23 23 H 1.08996 * 109.47324 * 120.00331 * 2 1 3 24 24 H 1.09000 * 109.46744 * 240.00119 * 2 1 3 25 25 H 1.07997 * 120.16290 * 0.02562 * 5 4 3 26 26 H 0.97000 * 120.00177 * 180.02562 * 10 9 7 27 27 H 1.08002 * 119.97303 * 179.75174 * 15 6 5 28 28 H 1.08002 * 119.82761 * 179.97438 * 16 15 6 29 29 H 0.97001 * 120.00337 * 180.02562 * 18 17 16 30 30 H 1.00894 * 110.99674 * 56.04947 * 19 18 17 31 31 H 1.00891 * 110.99858 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1937 0.4338 0.0067 6 6 5.5889 0.6271 0.0029 7 6 6.4581 -0.4847 0.0049 8 1 6.1255 -1.4295 0.4087 9 6 7.7501 -0.3630 -0.5161 10 7 8.0507 0.6481 -1.2916 11 14 9.0472 -1.6430 -0.1055 12 1 8.5940 -2.9761 -0.5777 13 1 10.3231 -1.2879 -0.7772 14 1 9.2554 -1.6830 1.3643 15 6 6.1132 1.9349 0.0030 16 6 5.2717 3.0080 0.0021 17 6 3.8905 2.8196 0.0006 18 7 3.0416 3.9203 -0.0009 19 7 3.5614 5.1836 -0.0014 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.7842 -0.5655 0.0107 26 1 8.9467 0.7323 -1.6533 27 1 7.1824 2.0876 0.0042 28 1 5.6774 4.0089 0.0025 29 1 2.0802 3.7915 -0.0016 30 1 4.1861 5.3172 -0.7823 31 1 2.8280 5.8764 -0.0020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307336669.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -14.432932 kcal Electronic energy + Delta-G solvation = -14901.258839 eV Core-core repulsion = 12375.572298 eV Total energy + Delta-G solvation = -2525.686541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68748 -38.43495 -37.25983 -34.94243 -32.62223 -31.54827 -30.17176 -28.68379 -25.82243 -24.53291 -22.60338 -21.73016 -19.68312 -18.81799 -17.65029 -17.30117 -16.87911 -16.80802 -15.77036 -15.66659 -14.96025 -14.44109 -14.16353 -14.01704 -13.51757 -13.28227 -13.00691 -12.88861 -12.75546 -12.44477 -12.08476 -11.85869 -11.77189 -11.39597 -11.29159 -10.85356 -9.68873 -8.99857 -8.53818 -7.81452 -6.03617 1.04680 1.17375 1.40940 1.51947 1.59222 2.26286 2.45339 2.69156 2.81591 3.78850 4.13354 4.22331 4.44065 4.45201 4.48105 4.76767 4.96892 5.00312 5.05775 5.14481 5.27844 5.29244 5.38396 5.70856 5.78886 6.08164 6.12322 6.31606 6.59170 6.75822 6.97108 7.04507 7.30647 7.74621 8.44907 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.008730 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.591256 B = 3206.425990 C = 4164.349984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 O -0.336 6.336 4 C 0.074 3.926 5 C -0.278 4.278 6 C 0.071 3.929 7 C -0.503 4.503 8 H 0.070 0.930 9 C 0.034 3.966 10 N -0.834 5.834 11 Si 0.979 3.021 12 H -0.261 1.261 13 H -0.268 1.268 14 H -0.263 1.263 15 C -0.172 4.172 16 C -0.130 4.130 17 C 0.085 3.915 18 N -0.607 5.607 19 N -0.602 5.602 20 H 0.064 0.936 21 H 0.097 0.903 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.285 0.715 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.401 0.599 30 H 0.324 0.676 31 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 1.623 0.631 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 O -0.251 6.251 4 C 0.026 3.974 5 C -0.299 4.299 6 C 0.068 3.932 7 C -0.533 4.533 8 H 0.089 0.911 9 C -0.179 4.179 10 N -0.461 5.461 11 Si 0.800 3.200 12 H -0.185 1.185 13 H -0.193 1.193 14 H -0.187 1.187 15 C -0.192 4.192 16 C -0.153 4.153 17 C -0.014 4.014 18 N -0.338 5.338 19 N -0.228 5.228 20 H 0.084 0.916 21 H 0.116 0.884 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.125 0.875 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.238 0.762 30 H 0.139 0.861 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.025 1.800 1.179 8.308 hybrid contribution 0.064 -0.548 -0.981 1.126 sum -7.961 1.253 0.198 8.061 Atomic orbital electron populations 1.21748 0.90555 1.03991 1.03200 1.22793 0.96917 0.81875 1.00690 1.85777 1.18997 1.29934 1.90402 1.18170 0.81838 0.92344 1.05073 1.20983 0.93841 0.96129 1.18979 1.17620 0.91291 0.93584 0.90697 1.19572 0.98212 0.97680 1.37868 0.91146 1.26652 1.00825 0.98414 0.91994 1.69919 1.22055 1.30552 1.23587 0.85310 0.76717 0.78467 0.79500 1.18545 1.19288 1.18702 1.20828 0.98836 0.92174 1.07362 1.20013 0.90747 0.98442 1.06082 1.16592 0.89647 0.83444 1.11736 1.42296 1.05426 0.98234 1.87842 1.60112 1.21026 0.92892 1.48791 0.91644 0.88400 0.91496 0.93101 0.93365 0.87480 0.90486 0.87860 0.86455 0.76164 0.86139 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 10.28 71.98 0.74 -2.35 16 2 C 0.05 1.69 5.46 71.98 0.39 2.09 16 3 O -0.34 -13.29 9.36 -93.32 -0.87 -14.16 16 4 C 0.07 3.48 6.70 22.59 0.15 3.63 16 5 C -0.28 -14.25 8.77 22.78 0.20 -14.05 16 6 C 0.07 4.02 5.57 -21.28 -0.12 3.90 16 7 C -0.50 -28.14 9.03 23.37 0.21 -27.93 16 8 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 9 C 0.03 1.80 5.14 85.22 0.44 2.24 16 10 N -0.83 -45.12 10.96 21.81 0.24 -44.88 16 11 Si 0.98 39.58 29.59 68.60 2.03 41.61 16 12 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 13 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 15 C -0.17 -9.44 8.62 22.49 0.19 -9.24 16 16 C -0.13 -6.38 9.27 22.11 0.21 -6.18 16 17 C 0.08 3.90 6.73 38.73 0.26 4.16 16 18 N -0.61 -22.37 6.62 -50.76 -0.34 -22.71 16 19 N -0.60 -18.19 9.57 37.02 0.35 -17.84 16 20 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.66 7.65 -2.39 -0.02 1.64 16 24 H 0.05 1.60 7.67 -2.39 -0.02 1.58 16 25 H 0.11 5.15 6.28 -2.91 -0.02 5.13 16 26 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 27 H 0.10 5.91 6.18 -2.91 -0.02 5.89 16 28 H 0.12 5.23 7.00 -2.91 -0.02 5.21 16 29 H 0.40 13.44 8.16 -215.49 -1.76 11.68 16 30 H 0.32 9.57 8.41 -210.56 -1.77 7.79 16 31 H 0.36 7.94 9.21 -210.56 -1.94 6.01 16 Total: -1.00 -63.86 264.18 -0.20 -64.06 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -4.29 Total: 37.66 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.67 Total: -43.74 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: 0.26 Total: -85.42 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.87 Total: -14.16 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -63.86 -0.20 -64.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307336669.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.625 kcal (2) G-P(sol) polarization free energy of solvation -63.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds