Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47087 * 2 1 4 4 C 1.36022 * 117.00171 * 179.97438 * 3 2 1 5 5 C 1.38537 * 120.03077 * 359.97438 * 4 3 2 6 6 C 1.38871 * 120.57185 * 180.02562 * 5 4 3 7 7 C 1.36439 * 120.63946 * 359.97438 * 6 5 4 8 8 C 1.40778 * 120.04085 * 359.75803 * 7 6 5 9 9 C 1.41076 * 120.27991 * 180.26325 * 8 7 6 10 10 H 1.08001 * 119.99860 * 155.76779 * 9 8 7 11 11 C 1.39915 * 119.99934 * 335.76760 * 9 8 7 12 12 N 1.30890 * 120.00318 * 343.30462 * 11 9 8 13 13 Si 1.86794 * 120.00004 * 163.31052 * 11 9 8 14 14 H 1.48509 * 109.47365 * 89.99444 * 13 11 9 15 15 H 1.48499 * 109.47507 * 209.99653 * 13 11 9 16 16 H 1.48504 * 109.47170 * 329.99807 * 13 11 9 17 17 C 1.39185 * 120.03454 * 180.02562 * 4 3 2 18 18 N 1.38976 * 120.30920 * 359.97438 * 17 4 3 19 19 N 1.45397 * 111.00046 * 324.58924 * 18 17 4 20 20 H 1.09000 * 109.46614 * 59.99897 * 1 2 3 21 21 H 1.08999 * 109.46903 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47302 * 299.99974 * 1 2 3 23 23 H 1.08996 * 109.47611 * 240.00179 * 2 1 3 24 24 H 1.09001 * 109.47330 * 120.00300 * 2 1 3 25 25 H 1.08002 * 119.71743 * 0.04880 * 5 4 3 26 26 H 1.08005 * 119.68103 * 180.02562 * 6 5 4 27 27 H 1.08009 * 119.97493 * 180.02562 * 7 6 5 28 28 H 0.96995 * 120.00487 * 180.02562 * 12 11 9 29 29 H 1.00898 * 111.00404 * 88.54845 * 18 17 4 30 30 H 1.00902 * 111.00105 * 174.24318 * 19 18 17 31 31 H 1.00901 * 111.00200 * 298.19250 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5256 0.0005 5 6 4.1994 0.4274 0.0016 6 6 5.5777 0.5964 0.0027 7 6 6.1251 1.8462 0.0022 8 6 5.2915 2.9806 -0.0045 9 6 5.8520 4.2752 -0.0106 10 1 5.2843 5.1076 -0.3994 11 6 7.1434 4.4807 0.4870 12 7 7.7050 3.5731 1.2447 13 14 8.0661 6.0505 0.0702 14 1 7.7743 7.0836 1.0964 15 1 9.5252 5.7755 0.0456 16 1 7.6323 6.5406 -1.2628 17 6 3.8875 2.8114 0.0011 18 7 3.0475 3.9186 0.0006 19 7 1.8518 3.6652 -0.7869 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 3.7822 -0.5688 0.0012 26 1 6.2228 -0.2699 0.0031 27 1 7.1986 1.9652 0.0027 28 1 8.6001 3.7158 1.5900 29 1 2.8092 4.1922 0.9421 30 1 1.1999 4.4315 -0.7113 31 1 2.0859 3.4834 -1.7514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307531107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = 9.907084 kcal Electronic energy + Delta-G solvation = -15169.841585 eV Core-core repulsion = 12645.210507 eV Total energy + Delta-G solvation = -2524.631079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82958 -36.49597 -34.37449 -33.37317 -31.06635 -29.72962 -28.14638 -25.94445 -24.75329 -22.87628 -20.48262 -19.91850 -17.74799 -16.18281 -15.82624 -15.22085 -15.19091 -14.88626 -14.08140 -13.64535 -13.11517 -12.60946 -12.41517 -12.25143 -12.16420 -11.70804 -11.29506 -11.19011 -10.96149 -10.55842 -10.47213 -10.32309 -9.88597 -9.64828 -9.42254 -9.08028 -7.48053 -6.97813 -6.81369 -6.38467 -4.31763 2.76276 3.06386 3.08712 3.13901 3.26873 3.93634 4.26290 4.64366 4.70657 5.37651 5.52261 5.66311 5.72888 5.92920 6.20414 6.23378 6.35224 6.38404 6.72215 6.99698 7.04508 7.21290 7.39814 7.64379 7.80499 7.86438 7.97524 8.15670 8.51735 8.54919 8.58645 8.82693 8.95982 9.17148 10.17290 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.042760 B = 0.008389 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.654747 B = 3337.019957 C = 3886.920926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.290 6.290 4 C 0.136 3.864 5 C -0.328 4.328 6 C -0.079 4.079 7 C -0.185 4.185 8 C 0.149 3.851 9 C -0.432 4.432 10 H 0.088 0.912 11 C 0.072 3.928 12 N -0.790 5.790 13 Si 0.911 3.089 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.261 1.261 17 C -0.072 4.072 18 N -0.455 5.455 19 N -0.685 5.685 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.280 0.720 29 H 0.332 0.668 30 H 0.328 0.672 31 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -1.919 -1.786 6.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.204 6.204 4 C 0.089 3.911 5 C -0.348 4.348 6 C -0.098 4.098 7 C -0.205 4.205 8 C 0.144 3.856 9 C -0.461 4.461 10 H 0.107 0.893 11 C -0.146 4.146 12 N -0.415 5.415 13 Si 0.736 3.264 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.184 1.184 17 C -0.171 4.171 18 N -0.175 5.175 19 N -0.304 5.304 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.140 0.860 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.832 -2.088 -1.656 6.412 hybrid contribution 0.425 0.472 -0.038 0.636 sum -5.407 -1.616 -1.695 5.892 Atomic orbital electron populations 1.21674 0.94180 1.01290 1.02899 1.22468 0.94535 0.85160 1.00027 1.86326 1.19878 1.25076 1.89078 1.19295 0.80940 0.94267 0.96615 1.20336 0.94291 0.95561 1.24660 1.20209 0.93472 0.96584 0.99565 1.20968 1.00064 0.90968 1.08471 1.17164 0.87707 0.93693 0.87049 1.19537 0.97727 0.95011 1.33834 0.89350 1.26032 0.97584 0.98275 0.92755 1.69877 1.14797 1.34167 1.22649 0.86267 0.78405 0.81536 0.80228 1.19506 1.20237 1.18449 1.18076 0.91796 0.84737 1.22510 1.60415 1.07912 1.33403 1.15750 1.61731 1.09666 1.44528 1.14427 0.91973 0.91791 0.92192 0.93565 0.93676 0.89164 0.89520 0.86025 0.90892 0.84685 0.86173 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.05 0.93 5.46 37.16 0.20 1.14 16 3 O -0.29 -6.15 7.96 -19.81 -0.16 -6.31 16 4 C 0.14 3.27 6.52 -39.12 -0.26 3.01 16 5 C -0.33 -7.72 9.04 -39.24 -0.35 -8.07 16 6 C -0.08 -1.92 9.96 -40.00 -0.40 -2.32 16 7 C -0.18 -4.86 8.64 -39.27 -0.34 -5.20 16 8 C 0.15 3.99 5.59 -106.65 -0.60 3.39 16 9 C -0.43 -11.38 8.69 -37.88 -0.33 -11.71 16 10 H 0.09 2.30 7.58 -52.49 -0.40 1.90 16 11 C 0.07 1.78 5.17 -17.33 -0.09 1.69 16 12 N -0.79 -20.18 10.87 55.55 0.60 -19.58 16 13 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 C -0.07 -1.82 6.18 -83.06 -0.51 -2.33 16 18 N -0.45 -10.11 6.89 32.82 0.23 -9.88 16 19 N -0.68 -12.91 8.02 60.35 0.48 -12.43 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.77 7.66 -51.93 -0.40 0.38 16 24 H 0.04 0.77 7.66 -51.93 -0.40 0.37 16 25 H 0.09 1.91 6.26 -52.49 -0.33 1.58 16 26 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 27 H 0.12 3.27 6.08 -52.48 -0.32 2.95 16 28 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.33 7.21 9.00 -174.66 -1.57 5.64 16 30 H 0.33 5.18 9.24 -174.66 -1.61 3.56 16 31 H 0.34 6.46 9.15 -174.66 -1.60 4.86 16 LS Contribution 263.60 15.07 3.97 3.97 Total: -1.00 -28.13 263.60 -9.64 -37.77 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.45 Total: 14.80 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.29 Total: -21.94 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 1.31 Total: -41.89 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.16 Total: -6.31 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.13 -9.64 -37.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307531107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.678 kcal (2) G-P(sol) polarization free energy of solvation -28.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds