Wall clock time and date at job start Mon Mar 30 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47130 * 2 1 4 4 O 1.42900 * 109.47189 * 240.00137 * 2 1 3 5 5 C 1.52997 * 109.47223 * 120.00325 * 2 1 3 6 6 N 1.46505 * 109.47300 * 184.99810 * 5 2 1 7 7 C 1.38363 * 120.00142 * 179.97438 * 6 5 2 8 8 C 1.39716 * 119.43120 * 359.72691 * 7 6 5 9 9 C 1.36561 * 119.49128 * 179.75956 * 8 7 6 10 10 C 1.41317 * 118.41069 * 0.50699 * 9 8 7 11 11 C 1.41204 * 120.57393 * 179.76509 * 10 9 8 12 12 H 1.07994 * 120.00271 * 203.62122 * 11 10 9 13 13 C 1.39874 * 119.99526 * 23.61537 * 11 10 9 14 14 N 1.30895 * 120.00385 * 17.64292 * 13 11 10 15 15 Si 1.86803 * 119.99785 * 197.64319 * 13 11 10 16 16 H 1.48501 * 109.46995 * 60.00100 * 15 13 11 17 17 H 1.48497 * 109.47184 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47097 * 300.00149 * 15 13 11 19 19 C 1.40755 * 118.86079 * 359.73841 * 10 9 8 20 20 N 1.31489 * 120.36957 * 0.02562 * 19 10 9 21 21 H 1.08998 * 109.47646 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46878 * 300.00027 * 1 2 3 23 23 H 1.09004 * 109.47373 * 59.99777 * 1 2 3 24 24 H 0.96706 * 113.99908 * 299.99957 * 4 2 1 25 25 H 1.09007 * 109.47091 * 304.99508 * 5 2 1 26 26 H 1.09000 * 109.47297 * 64.99811 * 5 2 1 27 27 H 0.96995 * 119.99464 * 0.02562 * 6 5 2 28 28 H 1.08002 * 120.25238 * 0.02562 * 8 7 6 29 29 H 1.08003 * 120.79292 * 180.22392 * 9 8 7 30 30 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 31 31 H 1.08003 * 119.81835 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6180 1.3109 7 6 4.1909 -1.1978 2.3601 8 6 3.4837 -1.8741 3.3574 9 6 4.1647 -2.4510 4.3909 10 6 5.5726 -2.3316 4.4184 11 6 6.3219 -2.9062 5.4683 12 1 7.3005 -2.5179 5.7087 13 6 5.7964 -3.9783 6.1969 14 7 4.7964 -4.6708 5.7134 15 14 6.5218 -4.4218 7.8603 16 1 6.3922 -3.2642 8.7813 17 1 5.7925 -5.5861 8.4238 18 1 7.9569 -4.7672 7.6982 19 6 6.2153 -1.6304 3.3808 20 7 5.5138 -1.0969 2.4050 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7209 -1.5952 -1.2329 25 1 1.6054 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2055 27 1 3.9823 -0.1424 0.6165 28 1 2.4070 -1.9437 3.3090 29 1 3.6396 -2.9820 5.1712 30 1 4.4323 -5.4145 6.2186 31 1 7.2905 -1.5293 3.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307706438.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:14 Heat of formation + Delta-G solvation = -27.923125 kcal Electronic energy + Delta-G solvation = -14531.566290 eV Core-core repulsion = 12005.294771 eV Total energy + Delta-G solvation = -2526.271520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.69549 -37.68422 -34.74001 -33.40459 -31.15192 -30.53789 -29.00032 -26.16334 -24.11494 -22.34770 -21.23414 -20.58363 -17.24641 -16.75502 -16.24406 -15.91784 -15.17935 -14.88353 -13.93682 -13.63842 -13.50664 -13.28984 -12.60719 -12.46923 -12.14468 -11.93379 -11.72006 -11.53630 -11.17957 -11.04708 -10.86466 -10.56293 -10.06282 -9.77432 -9.39435 -8.70699 -8.22279 -7.98202 -6.82098 -6.58849 -4.16677 2.78405 3.01011 3.09028 3.12380 3.31789 3.96441 4.03075 4.45363 4.71919 4.82707 5.05538 5.12444 5.53346 5.58149 5.77313 5.84885 5.91635 6.11289 6.15697 6.51089 6.65284 6.88955 7.19396 7.34897 7.44451 7.60337 7.78664 7.93530 8.29971 8.46644 8.69353 8.86457 8.95016 9.75306 10.25050 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059572 B = 0.005640 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.909527 B = 4963.155474 C = 5262.894189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.101 0.899 4 O -0.561 6.561 5 C 0.113 3.887 6 N -0.741 5.741 7 C 0.278 3.722 8 C -0.205 4.205 9 C -0.094 4.094 10 C 0.029 3.971 11 C -0.458 4.458 12 H 0.077 0.923 13 C 0.074 3.926 14 N -0.807 5.807 15 Si 0.908 3.092 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.012 3.988 20 N -0.522 5.522 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.375 0.625 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.392 0.608 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.279 0.721 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 3.952 -4.871 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.033 3.967 3 H 0.119 0.881 4 O -0.366 6.366 5 C -0.014 4.014 6 N -0.381 5.381 7 C 0.045 3.955 8 C -0.229 4.229 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.489 4.489 12 H 0.096 0.904 13 C -0.142 4.142 14 N -0.434 5.434 15 Si 0.733 3.267 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.146 4.146 20 N -0.238 5.238 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.223 0.777 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.226 0.774 28 H 0.113 0.887 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.471 4.698 -5.498 10.398 hybrid contribution -0.333 -1.225 1.416 1.901 sum -7.804 3.473 -4.082 9.468 Atomic orbital electron populations 1.22424 0.95871 1.02798 1.02861 1.22133 0.92993 0.97070 0.84525 0.88072 1.86579 1.77412 1.29108 1.43547 1.21741 0.82668 0.99616 0.97330 1.43497 1.03547 1.63822 1.27199 1.17783 0.88401 0.99023 0.90263 1.20801 0.98321 1.05607 0.98161 1.21298 0.94349 0.98815 0.97628 1.18354 0.92471 0.93595 0.93228 1.19296 1.03293 1.13204 1.13125 0.90438 1.25847 0.94408 0.94990 0.98939 1.69812 1.21966 1.15056 1.36534 0.86370 0.79907 0.78411 0.82015 1.18970 1.20498 1.19060 1.22208 0.97394 1.03627 0.91416 1.66536 1.05971 1.23494 1.27752 0.92069 0.91306 0.91667 0.77747 0.92556 0.93098 0.77384 0.88665 0.85505 0.91006 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.53 37.15 0.35 -1.25 16 2 C 0.09 1.06 3.62 -26.74 -0.10 0.97 16 3 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 4 O -0.56 -7.03 13.29 -35.23 -0.47 -7.50 16 5 C 0.11 1.64 4.51 -4.04 -0.02 1.62 16 6 N -0.74 -13.98 5.65 -60.35 -0.34 -14.32 16 7 C 0.28 6.52 7.64 -155.13 -1.19 5.33 16 8 C -0.20 -4.86 9.24 -39.64 -0.37 -5.22 16 9 C -0.09 -2.46 8.74 -39.02 -0.34 -2.80 16 10 C 0.03 0.77 5.59 -106.65 -0.60 0.18 16 11 C -0.46 -12.19 9.07 -37.84 -0.34 -12.53 16 12 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 13 C 0.07 1.87 5.17 -17.34 -0.09 1.78 16 14 N -0.81 -20.95 10.92 55.54 0.61 -20.34 16 15 Si 0.91 18.76 29.59 -169.99 -5.03 13.72 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 19 C 0.01 0.30 10.97 -16.75 -0.18 0.12 16 20 N -0.52 -13.21 10.37 -11.78 -0.12 -13.34 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.38 3.58 9.05 45.56 0.41 4.00 16 25 H 0.06 0.81 7.89 -51.93 -0.41 0.40 16 26 H 0.05 0.75 7.91 -51.93 -0.41 0.33 16 27 H 0.39 7.26 8.59 -40.82 -0.35 6.90 16 28 H 0.10 1.99 6.64 -52.49 -0.35 1.64 16 29 H 0.13 3.37 6.19 -52.48 -0.32 3.04 16 30 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 31 H 0.13 3.04 8.06 -52.48 -0.42 2.61 16 LS Contribution 268.33 15.07 4.04 4.04 Total: -1.00 -29.69 268.33 -7.27 -36.96 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -3.10 Total: 12.58 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -2.87 Total: -11.81 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.14 Total: -48.00 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.47 Total: -7.50 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.69 -7.27 -36.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307706438.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.042 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds