Wall clock time and date at job start Mon Mar 30 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47130 * 2 1 4 4 O 1.42900 * 109.47189 * 240.00137 * 2 1 3 5 5 C 1.52997 * 109.47223 * 120.00325 * 2 1 3 6 6 N 1.46505 * 109.47300 * 184.99810 * 5 2 1 7 7 C 1.38363 * 120.00142 * 179.97438 * 6 5 2 8 8 C 1.39716 * 119.43120 * 359.72691 * 7 6 5 9 9 C 1.36561 * 119.49128 * 179.75956 * 8 7 6 10 10 C 1.41317 * 118.41069 * 0.50699 * 9 8 7 11 11 C 1.41204 * 120.57393 * 179.76509 * 10 9 8 12 12 H 1.07994 * 120.00271 * 203.62122 * 11 10 9 13 13 C 1.39874 * 119.99526 * 23.61537 * 11 10 9 14 14 N 1.30895 * 120.00385 * 17.64292 * 13 11 10 15 15 Si 1.86803 * 119.99785 * 197.64319 * 13 11 10 16 16 H 1.48501 * 109.46995 * 60.00100 * 15 13 11 17 17 H 1.48497 * 109.47184 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47097 * 300.00149 * 15 13 11 19 19 C 1.40755 * 118.86079 * 359.73841 * 10 9 8 20 20 N 1.31489 * 120.36957 * 0.02562 * 19 10 9 21 21 H 1.08998 * 109.47646 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46878 * 300.00027 * 1 2 3 23 23 H 1.09004 * 109.47373 * 59.99777 * 1 2 3 24 24 H 0.96706 * 113.99908 * 299.99957 * 4 2 1 25 25 H 1.09007 * 109.47091 * 304.99508 * 5 2 1 26 26 H 1.09000 * 109.47297 * 64.99811 * 5 2 1 27 27 H 0.96995 * 119.99464 * 0.02562 * 6 5 2 28 28 H 1.08002 * 120.25238 * 0.02562 * 8 7 6 29 29 H 1.08003 * 120.79292 * 180.22392 * 9 8 7 30 30 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 31 31 H 1.08003 * 119.81835 * 179.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5001 -0.6180 1.3109 7 6 4.1909 -1.1978 2.3601 8 6 3.4837 -1.8741 3.3574 9 6 4.1647 -2.4510 4.3909 10 6 5.5726 -2.3316 4.4184 11 6 6.3219 -2.9062 5.4683 12 1 7.3005 -2.5179 5.7087 13 6 5.7964 -3.9783 6.1969 14 7 4.7964 -4.6708 5.7134 15 14 6.5218 -4.4218 7.8603 16 1 6.3922 -3.2642 8.7813 17 1 5.7925 -5.5861 8.4238 18 1 7.9569 -4.7672 7.6982 19 6 6.2153 -1.6304 3.3808 20 7 5.5138 -1.0969 2.4050 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.7209 -1.5952 -1.2329 25 1 1.6054 -0.2618 2.1370 26 1 1.7516 -1.7716 1.2055 27 1 3.9823 -0.1424 0.6165 28 1 2.4070 -1.9437 3.3090 29 1 3.6396 -2.9820 5.1712 30 1 4.4323 -5.4145 6.2186 31 1 7.2905 -1.5293 3.3866 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307706438.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:14 Heat of formation + Delta-G solvation = -49.196636 kcal Electronic energy + Delta-G solvation = -14532.488779 eV Core-core repulsion = 12005.294771 eV Total energy + Delta-G solvation = -2527.194008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45107 -38.85535 -36.39808 -35.10624 -32.56497 -32.16934 -30.72173 -27.62415 -25.75730 -23.98692 -22.68114 -22.24872 -19.19531 -18.23099 -17.66892 -16.99453 -16.84413 -16.48206 -15.52040 -15.02199 -15.01381 -14.82672 -14.18683 -13.75915 -13.54617 -13.47343 -13.26005 -12.94671 -12.76419 -12.74618 -12.23931 -11.80419 -11.62947 -11.22054 -11.03973 -10.47106 -10.18012 -9.93204 -8.68423 -8.41911 -6.13518 0.88123 1.11896 1.41881 1.52659 1.59063 2.24897 2.62262 2.81287 3.53216 3.77843 3.82237 4.14867 4.20363 4.26285 4.63843 4.65203 4.68907 4.77477 4.89212 4.97159 5.17532 5.26708 5.29599 5.40127 5.56977 5.86917 5.97320 6.48082 6.61926 6.80031 6.83854 6.91914 7.13152 7.84193 8.38867 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.059572 B = 0.005640 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.909527 B = 4963.155474 C = 5262.894189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 H 0.100 0.900 4 O -0.577 6.577 5 C 0.107 3.893 6 N -0.733 5.733 7 C 0.281 3.719 8 C -0.206 4.206 9 C -0.109 4.109 10 C -0.002 4.002 11 C -0.493 4.493 12 H 0.078 0.922 13 C 0.034 3.966 14 N -0.837 5.837 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.269 1.269 18 H -0.261 1.261 19 C -0.004 4.004 20 N -0.539 5.539 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.387 0.613 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.395 0.605 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.287 0.713 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 4.050 -4.860 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.042 3.958 3 H 0.118 0.882 4 O -0.385 6.385 5 C -0.018 4.018 6 N -0.372 5.372 7 C 0.046 3.954 8 C -0.230 4.230 9 C -0.136 4.136 10 C -0.007 4.007 11 C -0.524 4.524 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.464 5.464 15 Si 0.804 3.196 16 H -0.186 1.186 17 H -0.193 1.193 18 H -0.185 1.185 19 C -0.161 4.161 20 N -0.256 5.256 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.237 0.763 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.229 0.771 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.637 4.806 -5.523 11.322 hybrid contribution -0.068 -1.211 1.274 1.759 sum -8.705 3.595 -4.249 10.332 Atomic orbital electron populations 1.22357 0.93374 1.03707 1.03742 1.22088 0.94712 0.96337 0.82702 0.88188 1.86555 1.77943 1.30259 1.43735 1.22058 0.79933 1.00441 0.99389 1.43688 1.05287 1.62570 1.25681 1.18170 0.88163 0.98008 0.91013 1.21024 0.99740 1.04886 0.97398 1.21338 0.94325 0.99512 0.98380 1.18656 0.93250 0.94696 0.94080 1.19554 1.03882 1.14514 1.14430 0.90406 1.26692 0.94667 0.94243 1.02283 1.69858 1.23022 1.15524 1.38014 0.85234 0.79201 0.78333 0.76809 1.18600 1.19336 1.18502 1.22376 0.98025 1.04094 0.91640 1.66613 1.06955 1.24234 1.27755 0.91189 0.90410 0.90806 0.76343 0.91855 0.92749 0.77109 0.85841 0.86460 0.90234 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.53 71.98 0.69 -1.84 16 2 C 0.10 2.07 3.62 30.59 0.11 2.18 16 3 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 4 O -0.58 -13.19 13.29 -148.98 -1.98 -15.17 16 5 C 0.11 2.85 4.51 86.38 0.39 3.24 16 6 N -0.73 -26.57 5.65 -344.84 -1.95 -28.52 16 7 C 0.28 13.01 7.64 133.32 1.02 14.03 16 8 C -0.21 -9.67 9.24 22.23 0.21 -9.46 16 9 C -0.11 -5.75 8.74 22.64 0.20 -5.56 16 10 C 0.00 -0.09 5.59 -21.18 -0.12 -0.21 16 11 C -0.49 -26.80 9.07 23.40 0.21 -26.58 16 12 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 13 C 0.03 1.74 5.17 85.23 0.44 2.18 16 14 N -0.84 -43.75 10.92 21.82 0.24 -43.51 16 15 Si 0.98 38.25 29.59 68.60 2.03 40.28 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.27 -9.88 7.11 99.48 0.71 -9.18 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 C 0.00 -0.23 10.97 85.36 0.94 0.71 16 20 N -0.54 -27.38 10.37 -191.19 -1.98 -29.37 16 21 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.39 6.53 9.05 -74.05 -0.67 5.86 16 25 H 0.06 1.65 7.89 -2.38 -0.02 1.63 16 26 H 0.05 1.45 7.91 -2.39 -0.02 1.43 16 27 H 0.39 14.05 8.59 -92.71 -0.80 13.25 16 28 H 0.12 4.95 6.64 -2.91 -0.02 4.93 16 29 H 0.12 6.35 6.19 -2.91 -0.02 6.33 16 30 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 31 H 0.13 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -63.48 268.33 0.12 -63.36 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.31 Total: 34.23 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.08 Total: -21.31 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -3.69 Total: -101.40 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.98 Total: -15.17 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -63.48 0.12 -63.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307706438.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.164 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds