Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.75939 * 180.27438 * 5 4 3 7 7 H 1.08998 * 109.47207 * 339.71885 * 6 5 4 8 8 C 1.52997 * 109.47069 * 99.72258 * 6 5 4 9 9 N 1.46507 * 109.46882 * 219.71734 * 6 5 4 10 10 C 1.36934 * 119.99396 * 154.99668 * 9 6 5 11 11 H 1.07999 * 120.00858 * 0.02562 * 10 9 6 12 12 C 1.38820 * 119.99646 * 180.02562 * 10 9 6 13 13 N 1.31625 * 119.99806 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99993 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47319 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46789 * 120.00042 * 14 12 10 17 17 H 1.48497 * 109.46833 * 240.00026 * 14 12 10 18 18 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 19 19 C 1.38040 * 119.29432 * 0.02562 * 18 5 4 20 20 N 1.31976 * 120.83318 * 359.97438 * 19 18 5 21 21 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 22 22 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 24 24 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 25 25 H 1.09008 * 109.47323 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.47396 * 299.99456 * 8 6 5 27 27 H 1.09002 * 109.47866 * 59.99542 * 8 6 5 28 28 H 0.96994 * 120.00222 * 335.00371 * 9 6 5 29 29 H 0.96994 * 119.99634 * 179.97438 * 13 12 10 30 30 H 1.07998 * 120.35161 * 179.97438 * 18 5 4 31 31 H 1.08000 * 119.58580 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 5.5513 2.6268 -0.0079 7 1 5.9880 1.6924 0.3445 8 6 6.0348 2.9109 -1.4314 9 7 5.9621 3.7215 0.8749 10 6 7.2102 3.7150 1.4382 11 1 7.8919 2.9032 1.2314 12 6 7.5994 4.7519 2.2751 13 7 6.7684 5.7410 2.5276 14 14 9.3022 4.7435 3.0430 15 1 10.0374 3.5304 2.6036 16 1 10.0452 5.9550 2.6125 17 1 9.1779 4.7387 4.5227 18 6 3.2505 3.6491 -0.0016 19 6 1.8772 3.5097 -0.0010 20 7 1.3186 2.3140 -0.0005 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 4.0229 0.3694 -0.0005 25 1 7.1218 2.9927 -1.4364 26 1 5.7292 2.0965 -2.0883 27 1 5.5981 3.8453 -1.7839 28 1 5.3501 4.4507 1.0605 29 1 7.0402 6.4653 3.1126 30 1 3.6994 4.6314 -0.0016 31 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308714581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = 6.797737 kcal Electronic energy + Delta-G solvation = -14708.868500 eV Core-core repulsion = 12184.102590 eV Total energy + Delta-G solvation = -2524.765910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35457 -37.92259 -35.67324 -32.71015 -30.82363 -30.16415 -28.34676 -27.09696 -24.37593 -23.11570 -22.78914 -20.20328 -17.87159 -17.05182 -16.67495 -15.83260 -15.50187 -14.73954 -14.36288 -14.00995 -13.49176 -13.28392 -13.21614 -12.54829 -12.33582 -12.00081 -11.57104 -11.41702 -11.03399 -10.89448 -10.80186 -10.57187 -10.08419 -9.77914 -9.35541 -9.25222 -8.93115 -8.22147 -7.05217 -5.82444 -3.11848 1.48249 1.64026 3.25601 3.41026 3.46851 3.48914 4.10227 4.53433 4.58901 5.14468 5.27275 5.33251 5.34411 5.44183 5.51413 5.60228 5.63994 5.76700 6.01152 6.07510 6.20959 6.28393 6.45275 6.59959 6.72124 6.85427 7.03648 7.45395 7.65995 8.11770 8.35371 9.47255 10.00732 10.36530 11.40229 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046782 B = 0.006132 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.376047 B = 4565.053466 C = 4652.552107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.313 6.313 3 C 0.310 3.690 4 C -0.188 4.188 5 C 0.009 3.991 6 C 0.205 3.795 7 H 0.062 0.938 8 C -0.159 4.159 9 N -0.720 5.720 10 C -0.241 4.241 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.931 5.931 14 Si 0.908 3.092 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.291 1.291 18 C -0.191 4.191 19 C 0.131 3.869 20 N -0.551 5.551 21 H 0.055 0.945 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.137 0.863 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.141 0.859 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -7.593 -6.464 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.220 6.220 3 C 0.131 3.869 4 C -0.209 4.209 5 C 0.000 4.000 6 C 0.096 3.904 7 H 0.080 0.920 8 C -0.220 4.220 9 N -0.363 5.363 10 C -0.372 4.372 11 H 0.091 0.909 12 C -0.207 4.207 13 N -0.579 5.579 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.218 1.218 18 C -0.211 4.211 19 C -0.023 4.023 20 N -0.276 5.276 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.221 0.779 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.350 -7.967 -6.386 14.538 hybrid contribution 1.318 0.566 0.579 1.547 sum -9.031 -7.400 -5.807 13.040 Atomic orbital electron populations 1.22762 0.77916 1.02344 1.02233 1.86213 1.22380 1.25048 1.88407 1.19737 0.89270 0.84493 0.93355 1.20892 0.91611 0.99150 1.09294 1.20713 0.97915 0.91556 0.89785 1.19246 0.85896 0.93849 0.91452 0.92030 1.22415 1.02014 1.00261 0.97284 1.42498 1.15952 1.23284 1.54526 1.19290 0.90834 1.05376 1.21728 0.90875 1.24754 0.98347 0.97203 1.00440 1.69669 1.35288 1.11927 1.41055 0.86099 0.83793 0.77294 0.78889 1.20469 1.21807 1.21824 1.21915 0.94238 1.00375 1.04604 1.22296 0.92891 0.93311 0.93825 1.67224 1.40992 0.98861 1.20501 0.92612 0.89109 0.92550 0.84501 0.91990 0.94160 0.93122 0.77894 0.93445 0.84142 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.68 10.48 -18.75 -0.20 -4.88 16 3 C 0.31 5.15 7.49 -17.12 -0.13 5.02 16 4 C -0.19 -3.17 9.71 -39.28 -0.38 -3.55 16 5 C 0.01 0.16 4.98 -104.35 -0.52 -0.36 16 6 C 0.21 4.08 3.13 -69.08 -0.22 3.86 16 7 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 8 C -0.16 -2.83 9.47 37.16 0.35 -2.48 16 9 N -0.72 -17.68 5.08 -54.55 -0.28 -17.96 16 10 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 11 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 12 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 13 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 14 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 18 C -0.19 -3.28 9.15 -39.43 -0.36 -3.64 16 19 C 0.13 2.03 11.18 -17.56 -0.20 1.84 16 20 N -0.55 -9.02 9.22 -13.33 -0.12 -9.14 16 21 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 25 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.39 9.94 6.14 -40.82 -0.25 9.69 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.14 2.45 7.00 -52.49 -0.37 2.09 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 271.77 15.07 4.10 4.10 Total: -1.00 -30.53 271.77 -5.40 -35.93 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -3.96 Total: 6.74 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.65 Total: -4.90 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.32 Total: -54.03 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.53 -5.40 -35.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.732 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds