Wall clock time and date at job start Mon Mar 30 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35682 * 117.00164 * 2 1 4 4 C 1.38918 * 119.68399 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.11367 * 179.97438 * 4 3 2 6 6 C 1.50696 * 120.75939 * 180.27438 * 5 4 3 7 7 H 1.08998 * 109.47207 * 339.71885 * 6 5 4 8 8 C 1.52997 * 109.47069 * 99.72258 * 6 5 4 9 9 N 1.46507 * 109.46882 * 219.71734 * 6 5 4 10 10 C 1.36934 * 119.99396 * 154.99668 * 9 6 5 11 11 H 1.07999 * 120.00858 * 0.02562 * 10 9 6 12 12 C 1.38820 * 119.99646 * 180.02562 * 10 9 6 13 13 N 1.31625 * 119.99806 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99993 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47319 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46789 * 120.00042 * 14 12 10 17 17 H 1.48497 * 109.46833 * 240.00026 * 14 12 10 18 18 C 1.38835 * 118.47905 * 359.97438 * 5 4 3 19 19 C 1.38040 * 119.29432 * 0.02562 * 18 5 4 20 20 N 1.31976 * 120.83318 * 359.97438 * 19 18 5 21 21 H 1.08997 * 109.46674 * 60.00490 * 1 2 3 22 22 H 1.08998 * 109.47007 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47251 * 300.00706 * 1 2 3 24 24 H 1.08004 * 120.44387 * 359.97438 * 4 3 2 25 25 H 1.09008 * 109.47323 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.47396 * 299.99456 * 8 6 5 27 27 H 1.09002 * 109.47866 * 59.99542 * 8 6 5 28 28 H 0.96994 * 120.00222 * 335.00371 * 9 6 5 29 29 H 0.96994 * 119.99634 * 179.97438 * 13 12 10 30 30 H 1.07998 * 120.35161 * 179.97438 * 18 5 4 31 31 H 1.08000 * 119.58580 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0486 2.5131 -0.0011 6 6 5.5513 2.6268 -0.0079 7 1 5.9880 1.6924 0.3445 8 6 6.0348 2.9109 -1.4314 9 7 5.9621 3.7215 0.8749 10 6 7.2102 3.7150 1.4382 11 1 7.8919 2.9032 1.2314 12 6 7.5994 4.7519 2.2751 13 7 6.7684 5.7410 2.5276 14 14 9.3022 4.7435 3.0430 15 1 10.0374 3.5304 2.6036 16 1 10.0452 5.9550 2.6125 17 1 9.1779 4.7387 4.5227 18 6 3.2505 3.6491 -0.0016 19 6 1.8772 3.5097 -0.0010 20 7 1.3186 2.3140 -0.0005 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 4.0229 0.3694 -0.0005 25 1 7.1218 2.9927 -1.4364 26 1 5.7292 2.0965 -2.0883 27 1 5.5981 3.8453 -1.7839 28 1 5.3501 4.4507 1.0605 29 1 7.0402 6.4653 3.1126 30 1 3.6994 4.6314 -0.0016 31 1 1.2519 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308714581.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:13 Heat of formation + Delta-G solvation = -14.466570 kcal Electronic energy + Delta-G solvation = -14709.790590 eV Core-core repulsion = 12184.102590 eV Total energy + Delta-G solvation = -2525.688000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.61336 -39.15840 -37.27473 -34.52831 -32.37985 -31.50393 -30.04539 -28.10856 -26.18699 -24.44009 -24.31760 -21.64367 -19.57005 -18.59989 -17.97371 -16.95019 -16.87930 -16.53977 -15.79787 -15.47256 -14.88417 -14.86946 -14.60830 -14.06780 -13.84979 -13.22263 -13.12233 -12.83198 -12.68778 -12.50354 -12.23037 -12.10602 -11.91254 -11.71010 -11.07990 -10.63941 -10.52490 -9.46930 -9.05556 -7.94501 -5.23518 0.20432 0.30301 1.49557 1.49748 1.59716 2.13812 2.56721 2.81412 3.37572 3.40787 3.80156 3.89623 4.12194 4.18915 4.31374 4.46648 4.49159 4.57067 4.68753 4.77664 4.79735 4.90048 5.03342 5.12407 5.39179 5.45499 5.51956 5.60316 6.26884 6.27520 6.85174 7.34502 8.05489 8.31046 9.29259 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046782 B = 0.006132 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.376047 B = 4565.053466 C = 4652.552107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.306 3.694 4 C -0.194 4.194 5 C -0.003 4.003 6 C 0.202 3.798 7 H 0.061 0.939 8 C -0.149 4.149 9 N -0.733 5.733 10 C -0.240 4.240 11 H 0.079 0.921 12 C -0.073 4.073 13 N -0.969 5.969 14 Si 0.972 3.028 15 H -0.265 1.265 16 H -0.294 1.294 17 H -0.296 1.296 18 C -0.204 4.204 19 C 0.138 3.862 20 N -0.554 5.554 21 H 0.058 0.942 22 H 0.124 0.876 23 H 0.053 0.947 24 H 0.150 0.850 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.377 0.623 29 H 0.251 0.749 30 H 0.132 0.868 31 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -8.821 -7.024 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.127 3.873 4 C -0.215 4.215 5 C -0.012 4.012 6 C 0.094 3.906 7 H 0.079 0.921 8 C -0.209 4.209 9 N -0.374 5.374 10 C -0.371 4.371 11 H 0.097 0.903 12 C -0.265 4.265 13 N -0.619 5.619 14 Si 0.801 3.199 15 H -0.189 1.189 16 H -0.221 1.221 17 H -0.223 1.223 18 C -0.224 4.224 19 C -0.016 4.016 20 N -0.279 5.279 21 H 0.077 0.923 22 H 0.142 0.858 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.210 0.790 29 H 0.060 0.940 30 H 0.150 0.850 31 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.922 -9.253 -6.982 15.926 hybrid contribution 1.365 0.850 0.689 1.750 sum -9.556 -8.403 -6.293 14.196 Atomic orbital electron populations 1.23055 0.75866 1.04618 1.02208 1.86208 1.24400 1.24147 1.88017 1.19899 0.89426 0.85149 0.92817 1.20993 0.92163 0.99101 1.09238 1.20543 0.96830 0.92540 0.91236 1.19387 0.87426 0.92231 0.91575 0.92078 1.22250 1.01106 1.01208 0.96306 1.42660 1.15152 1.24383 1.55245 1.19669 0.91834 1.04944 1.20684 0.90273 1.25525 1.01879 0.97324 1.01788 1.69816 1.37086 1.12730 1.42317 0.85098 0.79862 0.77491 0.77459 1.18921 1.22091 1.22318 1.21932 0.95128 0.99779 1.05607 1.22752 0.92547 0.94157 0.92143 1.67334 1.40968 0.99024 1.20527 0.92338 0.85791 0.92813 0.83184 0.93075 0.91270 0.93501 0.78982 0.94015 0.85032 0.79530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.38 113.37 1.18 1.91 16 2 O -0.32 -8.90 10.48 -90.00 -0.94 -9.84 16 3 C 0.31 9.62 7.49 84.79 0.63 10.26 16 4 C -0.19 -6.26 9.71 22.47 0.22 -6.04 16 5 C 0.00 -0.11 4.98 -19.69 -0.10 -0.21 16 6 C 0.20 7.91 3.13 44.24 0.14 8.05 16 7 H 0.06 2.38 7.98 -2.39 -0.02 2.37 16 8 C -0.15 -5.13 9.47 71.98 0.68 -4.45 16 9 N -0.73 -36.19 5.08 -326.50 -1.66 -37.85 16 10 C -0.24 -13.02 9.93 84.04 0.83 -12.19 16 11 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 12 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 13 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 14 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 17 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 18 C -0.20 -6.89 9.15 22.37 0.20 -6.69 16 19 C 0.14 4.07 11.18 84.62 0.95 5.01 16 20 N -0.55 -17.06 9.22 -308.95 -2.85 -19.91 16 21 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 22 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 24 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 25 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.38 19.78 6.14 -92.71 -0.57 19.22 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.13 4.65 7.00 -2.91 -0.02 4.63 16 31 H 0.19 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.27 271.77 2.62 -61.65 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.56 Total: 24.55 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.20 Total: -7.99 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -4.22 Total: -115.97 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.94 Total: -9.84 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -64.27 2.62 -61.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714581.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.187 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds