Wall clock time and date at job start Mon Mar 30 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 116.99952 * 2 1 4 4 C 1.38916 * 119.68384 * 179.97438 * 3 2 1 5 5 C 1.38382 * 119.11149 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.75754 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47252 * 20.00256 * 6 5 4 8 8 C 1.52995 * 109.47460 * 259.99618 * 6 5 4 9 9 N 1.46504 * 109.46700 * 139.99807 * 6 5 4 10 10 C 1.36943 * 119.99781 * 205.00239 * 9 6 5 11 11 H 1.08002 * 119.99788 * 359.97438 * 10 9 6 12 12 C 1.38811 * 119.99622 * 180.27904 * 10 9 6 13 13 N 1.31614 * 120.00467 * 359.72375 * 12 10 9 14 14 Si 1.86801 * 119.99700 * 179.72266 * 12 10 9 15 15 H 1.48501 * 109.46896 * 89.99850 * 14 12 10 16 16 H 1.48499 * 109.47039 * 210.00011 * 14 12 10 17 17 H 1.48501 * 109.47275 * 329.99811 * 14 12 10 18 18 C 1.38826 * 118.48399 * 0.26883 * 5 4 3 19 19 C 1.38051 * 119.28772 * 359.48479 * 18 5 4 20 20 N 1.31962 * 120.83604 * 0.53012 * 19 18 5 21 21 H 1.08997 * 109.47302 * 299.99843 * 1 2 3 22 22 H 1.09006 * 109.46914 * 60.00213 * 1 2 3 23 23 H 1.09000 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.07998 * 120.44528 * 359.97184 * 4 3 2 25 25 H 1.09007 * 109.46569 * 60.00114 * 8 6 5 26 26 H 1.09001 * 109.47135 * 179.97438 * 8 6 5 27 27 H 1.08999 * 109.47409 * 300.00542 * 8 6 5 28 28 H 0.97000 * 120.00410 * 25.00565 * 9 6 5 29 29 H 0.96995 * 120.00147 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.35680 * 179.72372 * 18 5 4 31 31 H 1.07998 * 119.57990 * 180.24677 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 0.0011 6 6 5.5512 2.6270 0.0022 7 1 5.9867 1.6915 -0.3490 8 6 6.0398 2.9153 1.4231 9 7 5.9588 3.7190 -0.8853 10 6 7.2050 3.7109 -1.4530 11 1 7.8874 2.8998 -1.2461 12 6 7.5933 4.7485 -2.2893 13 7 6.7619 5.7373 -2.5410 14 14 9.2960 4.7414 -3.0576 15 1 9.2465 4.0377 -4.3643 16 1 9.7512 6.1396 -3.2652 17 1 10.2439 4.0414 -2.1539 18 6 3.2504 3.6491 0.0068 19 6 1.8770 3.5097 0.0009 20 7 1.3185 2.3140 0.0004 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 4.0228 0.3696 0.0014 25 1 5.7364 2.1028 2.0835 26 1 7.1267 2.9971 1.4240 27 1 5.6042 3.8507 1.7744 28 1 5.3461 4.4477 -1.0708 29 1 7.0332 6.4621 -3.1257 30 1 3.6993 4.6315 0.0118 31 1 1.2517 4.3902 0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308714582.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:15 Heat of formation + Delta-G solvation = 6.838022 kcal Electronic energy + Delta-G solvation = -14708.912407 eV Core-core repulsion = 12184.148243 eV Total energy + Delta-G solvation = -2524.764163 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35404 -37.92175 -35.67116 -32.70938 -30.82346 -30.16278 -28.34393 -27.09635 -24.37242 -23.11608 -22.78702 -20.20132 -17.86989 -17.04940 -16.67324 -15.83194 -15.50245 -14.73768 -14.36027 -14.01139 -13.49183 -13.28227 -13.21427 -12.54352 -12.33240 -12.00105 -11.57022 -11.41767 -11.03270 -10.88007 -10.80034 -10.56721 -10.11774 -9.77534 -9.35085 -9.25240 -8.92519 -8.22012 -7.05121 -5.82079 -3.11584 1.48350 1.64113 3.25704 3.41582 3.46825 3.48247 4.10320 4.53616 4.58983 5.14599 5.27354 5.33324 5.34502 5.44294 5.51543 5.60274 5.64085 5.76975 6.01243 6.07636 6.21131 6.28495 6.45458 6.60036 6.72257 6.85556 7.03880 7.45476 7.65635 8.11865 8.35689 9.47494 10.00960 10.36757 11.40502 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.046730 B = 0.006133 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.048774 B = 4564.309160 C = 4650.737137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.313 6.313 3 C 0.310 3.690 4 C -0.188 4.188 5 C 0.009 3.991 6 C 0.205 3.795 7 H 0.062 0.938 8 C -0.159 4.159 9 N -0.720 5.720 10 C -0.242 4.242 11 H 0.073 0.927 12 C -0.011 4.011 13 N -0.932 5.932 14 Si 0.909 3.091 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.281 1.281 18 C -0.191 4.191 19 C 0.131 3.869 20 N -0.551 5.551 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.137 0.863 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.386 0.614 29 H 0.256 0.744 30 H 0.141 0.859 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 -7.536 6.497 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.220 6.220 3 C 0.131 3.869 4 C -0.209 4.209 5 C 0.000 4.000 6 C 0.096 3.904 7 H 0.080 0.920 8 C -0.220 4.220 9 N -0.362 5.362 10 C -0.373 4.373 11 H 0.091 0.909 12 C -0.207 4.207 13 N -0.579 5.579 14 Si 0.739 3.261 15 H -0.217 1.217 16 H -0.217 1.217 17 H -0.207 1.207 18 C -0.211 4.211 19 C -0.023 4.023 20 N -0.276 5.276 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.155 0.845 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.221 0.779 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.321 -7.898 6.422 14.496 hybrid contribution 1.321 0.552 -0.579 1.544 sum -9.000 -7.346 5.842 13.004 Atomic orbital electron populations 1.22763 0.77917 1.02344 1.02232 1.86212 1.22380 1.25046 1.88406 1.19738 0.89271 0.84492 0.93356 1.20891 0.91611 0.99150 1.09292 1.20712 0.97921 0.91556 0.89781 1.19245 0.85896 0.93876 0.91418 0.92039 1.22415 1.02011 1.00260 0.97296 1.42492 1.16140 1.23493 1.54117 1.19243 0.90955 1.05362 1.21753 0.90937 1.24745 0.98342 0.97142 1.00459 1.69653 1.35385 1.11896 1.41012 0.86170 0.83828 0.76765 0.79300 1.21660 1.21732 1.20667 1.21916 0.94239 1.00366 1.04617 1.22295 0.92892 0.93311 0.93815 1.67221 1.40994 0.98862 1.20501 0.92613 0.92549 0.89111 0.84503 0.94165 0.91995 0.93124 0.77894 0.93392 0.84149 0.82698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.69 10.48 -18.74 -0.20 -4.88 16 3 C 0.31 5.15 7.49 -17.12 -0.13 5.02 16 4 C -0.19 -3.17 9.71 -39.28 -0.38 -3.55 16 5 C 0.01 0.16 4.97 -104.35 -0.52 -0.36 16 6 C 0.21 4.08 3.13 -69.08 -0.22 3.87 16 7 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 8 C -0.16 -2.84 9.47 37.16 0.35 -2.49 16 9 N -0.72 -17.69 5.08 -54.55 -0.28 -17.96 16 10 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 13 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 14 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.19 -3.28 9.14 -39.43 -0.36 -3.64 16 19 C 0.13 2.04 11.18 -17.56 -0.20 1.84 16 20 N -0.55 -9.02 9.22 -13.33 -0.12 -9.14 16 21 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 22 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.39 9.95 6.16 -40.82 -0.25 9.70 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.14 2.45 7.03 -52.49 -0.37 2.08 16 31 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 271.80 15.07 4.10 4.10 Total: -1.00 -30.51 271.80 -5.40 -35.91 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.96 Total: 6.78 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.65 Total: -4.91 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.32 Total: -54.04 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.20 Total: -4.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.51 -5.40 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308714582.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.751 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds