Wall clock time and date at job start Mon Mar 30 2020 02:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46848 * 2 1 4 4 C 1.53001 * 109.47020 * 119.99606 * 2 1 3 5 5 H 1.08991 * 109.46989 * 59.87875 * 4 2 1 6 6 C 1.50699 * 109.46702 * 179.87762 * 4 2 1 7 7 H 1.08001 * 120.00218 * 115.12137 * 6 4 2 8 8 C 1.37883 * 120.00172 * 295.39968 * 6 4 2 9 9 N 1.31513 * 119.99950 * 353.15316 * 8 6 4 10 10 Si 1.86796 * 120.00052 * 173.15812 * 8 6 4 11 11 H 1.48501 * 109.47367 * 89.99584 * 10 8 6 12 12 H 1.48502 * 109.47053 * 209.99773 * 10 8 6 13 13 H 1.48506 * 109.47258 * 329.99811 * 10 8 6 14 14 N 1.46491 * 109.47338 * 299.87633 * 4 2 1 15 15 C 1.34132 * 125.70583 * 275.00502 * 14 4 2 16 16 C 1.38454 * 107.36663 * 180.02562 * 15 14 4 17 17 C 1.46671 * 126.47155 * 179.97438 * 16 15 14 18 18 O 1.21317 * 119.99696 * 179.97438 * 17 16 15 19 19 C 1.41549 * 107.05512 * 359.97438 * 16 15 14 20 20 N 1.30376 * 107.97636 * 359.72470 * 19 16 15 21 21 H 1.08996 * 109.47532 * 65.48275 * 1 2 3 22 22 H 1.09004 * 109.46735 * 185.47841 * 1 2 3 23 23 H 1.09000 * 109.47242 * 305.47767 * 1 2 3 24 24 H 1.08993 * 109.47151 * 240.00149 * 2 1 3 25 25 H 1.09000 * 109.47051 * 180.02562 * 3 2 1 26 26 H 1.09006 * 109.46721 * 300.00140 * 3 2 1 27 27 H 1.08998 * 109.47279 * 59.99409 * 3 2 1 28 28 H 0.96998 * 119.99879 * 180.02562 * 9 8 6 29 29 H 1.07992 * 126.31517 * 0.02562 * 15 14 4 30 30 H 1.08001 * 120.00499 * 359.97438 * 17 16 15 31 31 H 1.08001 * 126.01483 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6749 -1.7481 1.2504 6 6 3.5470 -0.7238 1.2477 7 1 4.0887 -0.1893 2.0140 8 6 4.2342 -1.4038 0.2646 9 7 3.5815 -2.1595 -0.5912 10 14 6.0924 -1.2517 0.1484 11 1 6.7283 -2.3077 0.9764 12 1 6.5145 -1.4107 -1.2664 13 1 6.5116 0.0844 0.6429 14 7 1.5541 -0.0288 2.4454 15 6 2.1368 1.0294 3.0283 16 6 1.3644 1.3749 4.1242 17 6 1.6209 2.4750 5.0596 18 8 0.8619 2.6737 5.9850 19 6 0.2804 0.4658 4.1712 20 7 0.4014 -0.3569 3.1671 21 1 -0.3634 0.4264 -0.9349 22 1 -0.3633 -1.0230 0.0981 23 1 -0.3634 0.5964 0.8369 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6765 1.9564 0.8899 28 1 4.0650 -2.6382 -1.2825 29 1 3.0415 1.5212 2.7029 30 1 2.4853 3.1082 4.9247 31 1 -0.5103 0.4578 4.9069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328578282.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:43 Heat of formation + Delta-G solvation = 7.587104 kcal Electronic energy + Delta-G solvation = -15314.568745 eV Core-core repulsion = 12789.837065 eV Total energy + Delta-G solvation = -2524.731681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.16018 -39.35271 -37.66401 -34.25309 -32.56623 -31.45690 -28.85967 -27.93821 -25.71975 -24.31476 -22.24870 -21.30930 -20.36124 -18.53828 -17.63977 -16.71911 -16.52815 -16.13164 -15.69026 -15.29089 -14.93824 -14.52868 -14.41510 -14.15804 -13.67573 -13.29176 -12.95570 -12.85198 -12.81722 -12.24025 -12.03633 -11.83912 -11.80104 -11.52587 -11.17341 -10.61859 -10.49056 -10.27485 -9.39874 -8.27953 -6.41849 0.59628 1.34141 1.45212 1.48068 1.56638 1.84117 2.40605 2.48026 3.06248 3.70549 3.90443 4.13579 4.25010 4.29127 4.39771 4.65729 4.73034 4.80692 4.89421 5.02220 5.04622 5.14607 5.26522 5.35644 5.55772 5.60304 5.62360 5.79624 5.93237 6.21261 6.67977 6.78934 6.96518 7.28174 8.80212 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.009442 C = 0.008111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.433599 B = 2964.908437 C = 3451.472048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.127 4.127 4 C 0.289 3.711 5 H 0.020 0.980 6 C -0.548 4.548 7 H 0.078 0.922 8 C 0.033 3.967 9 N -0.910 5.910 10 Si 0.963 3.037 11 H -0.283 1.283 12 H -0.284 1.284 13 H -0.253 1.253 14 N -0.322 5.322 15 C 0.142 3.858 16 C -0.382 4.382 17 C 0.431 3.569 18 O -0.530 6.530 19 C 0.077 3.923 20 N -0.349 5.349 21 H 0.060 0.940 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.204 0.796 30 H 0.145 0.855 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.748 7.856 1.960 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C -0.184 4.184 4 C 0.190 3.810 5 H 0.038 0.962 6 C -0.586 4.586 7 H 0.096 0.904 8 C -0.170 4.170 9 N -0.547 5.547 10 Si 0.787 3.213 11 H -0.209 1.209 12 H -0.210 1.210 13 H -0.176 1.176 14 N -0.097 5.097 15 C -0.015 4.015 16 C -0.395 4.395 17 C 0.295 3.705 18 O -0.408 6.408 19 C -0.109 4.109 20 N -0.169 5.169 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.220 0.780 30 H 0.161 0.839 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.124 6.719 1.528 6.892 hybrid contribution 1.016 -0.090 -0.030 1.021 sum 0.892 6.628 1.498 6.854 Atomic orbital electron populations 1.21734 0.96321 1.00171 1.00678 1.21350 0.93854 0.97392 0.99044 1.21693 1.01672 0.94501 1.00558 1.19144 0.93935 0.90518 0.77415 0.96181 1.21377 0.89229 1.34630 1.13376 0.90415 1.25591 1.03093 0.93466 0.94805 1.70041 1.37993 1.28543 1.18111 0.85470 0.79174 0.79347 0.77281 1.20924 1.20974 1.17638 1.49335 1.16352 1.22266 1.21743 1.23596 0.97881 0.88507 0.91470 1.21648 1.02934 1.09202 1.05722 1.23443 0.87075 0.81074 0.78935 1.90470 1.49427 1.69471 1.31461 1.24321 0.98670 0.92219 0.95718 1.77087 1.05006 1.25714 1.09063 0.92115 0.94810 0.94139 0.90405 0.92002 0.92815 0.93417 0.92168 0.77964 0.83860 0.78857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 8.88 71.98 0.64 -4.40 16 2 C -0.10 -4.01 2.63 -10.79 -0.03 -4.03 16 3 C -0.13 -4.44 8.43 71.98 0.61 -3.83 16 4 C 0.29 13.27 2.39 44.25 0.11 13.37 16 5 H 0.02 1.11 8.12 -2.39 -0.02 1.09 16 6 C -0.55 -25.54 7.01 25.60 0.18 -25.36 16 7 H 0.08 3.41 6.59 -2.91 -0.02 3.39 16 8 C 0.03 1.57 5.24 84.66 0.44 2.01 16 9 N -0.91 -46.94 11.98 21.45 0.26 -46.68 16 10 Si 0.96 37.93 29.54 68.60 2.03 39.95 16 11 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.25 -9.22 7.11 99.48 0.71 -8.51 16 14 N -0.32 -13.22 2.74 -329.10 -0.90 -14.12 16 15 C 0.14 4.78 8.07 84.39 0.68 5.46 16 16 C -0.38 -12.27 6.12 -20.21 -0.12 -12.39 16 17 C 0.43 11.48 11.69 70.02 0.82 12.30 16 18 O -0.53 -17.85 17.74 -3.15 -0.06 -17.91 16 19 C 0.08 2.77 11.84 85.73 1.01 3.78 16 20 N -0.35 -14.51 11.97 -56.13 -0.67 -15.18 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.03 1.35 8.14 -2.38 -0.02 1.34 16 23 H 0.04 1.55 7.38 -2.39 -0.02 1.53 16 24 H 0.08 3.66 6.72 -2.39 -0.02 3.64 16 25 H 0.06 2.21 7.22 -2.39 -0.02 2.20 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.05 1.56 6.13 -2.39 -0.01 1.55 16 28 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.20 5.63 7.45 -2.91 -0.02 5.60 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.19 6.03 8.06 -2.91 -0.02 6.00 16 Total: -1.00 -57.98 266.04 6.11 -51.87 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.12 Total: 15.16 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.34 Total: -13.09 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.32 Total: -75.99 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.95 kcal Total: -57.98 6.11 -51.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578282.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.458 kcal (2) G-P(sol) polarization free energy of solvation -57.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds