Wall clock time and date at job start Mon Mar 30 2020 02:43:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52991 * 109.47500 * 2 1
4 4 H 1.09004 * 109.47242 * 54.50967 * 3 2 1
5 5 C 1.52998 * 109.47363 * 174.51068 * 3 2 1
6 6 C 1.50703 * 109.46827 * 294.26740 * 5 3 2
7 7 H 1.07994 * 120.00214 * 354.92663 * 6 5 3
8 8 C 1.37885 * 119.99795 * 174.92656 * 6 5 3
9 9 N 1.31519 * 119.99952 * 359.97438 * 8 6 5
10 10 Si 1.86795 * 119.99825 * 180.02562 * 8 6 5
11 11 H 1.48494 * 109.47520 * 359.97438 * 10 8 6
12 12 H 1.48505 * 109.47284 * 120.00041 * 10 8 6
13 13 H 1.48505 * 109.47139 * 239.99539 * 10 8 6
14 14 N 1.46500 * 109.47469 * 294.51186 * 3 2 1
15 15 C 1.34129 * 125.70352 * 324.71932 * 14 3 2
16 16 C 1.38457 * 107.36937 * 179.84860 * 15 14 3
17 17 C 1.46666 * 126.47361 * 180.13677 * 16 15 14
18 18 O 1.21311 * 120.00166 * 0.30048 * 17 16 15
19 19 C 1.41555 * 107.04435 * 0.40461 * 16 15 14
20 20 N 1.30364 * 107.98890 * 359.75117 * 19 16 15
21 21 H 1.08999 * 109.47803 * 175.09092 * 1 2 3
22 22 H 1.09002 * 109.46928 * 55.08183 * 1 2 3
23 23 H 1.09008 * 109.46393 * 295.08950 * 1 2 3
24 24 H 1.08995 * 109.47069 * 120.00824 * 2 1 3
25 25 H 1.09005 * 109.46631 * 240.00240 * 2 1 3
26 26 H 1.08995 * 109.47076 * 54.26374 * 5 3 2
27 27 H 1.08998 * 109.47657 * 174.27017 * 5 3 2
28 28 H 0.96998 * 119.99956 * 180.02562 * 9 8 6
29 29 H 1.08000 * 126.31380 * 359.97438 * 15 14 3
30 30 H 1.08001 * 119.99749 * 180.29600 * 17 16 15
31 31 H 1.08003 * 126.00233 * 179.77069 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5987 1.9839 0.8368
5 6 3.5638 1.4445 0.1380
6 6 3.9464 0.9029 1.4913
7 1 3.1800 0.6655 2.2142
8 6 5.2749 0.7104 1.8064
9 7 6.2081 0.9991 0.9258
10 14 5.7490 0.0384 3.4835
11 1 4.5223 -0.2043 4.2845
12 1 6.4905 -1.2371 3.3142
13 1 6.6113 1.0228 4.1855
14 7 1.6627 2.0939 -1.2567
15 6 1.6052 1.5019 -2.4589
16 6 1.2057 2.4615 -3.3735
17 6 1.0049 2.2639 -4.8129
18 8 1.1873 1.1708 -5.3064
19 6 1.0336 3.6706 -2.6579
20 7 1.3076 3.4391 -1.4046
21 1 -0.3635 -1.0238 -0.0879
22 1 -0.3633 0.5883 -0.8427
23 1 -0.3632 0.4358 0.9308
24 1 1.8933 -0.5139 0.8899
25 1 1.8933 -0.5138 -0.8901
26 1 4.0000 0.8186 -0.6404
27 1 3.9365 2.4637 0.0360
28 1 7.1426 0.8633 1.1473
29 1 1.8275 0.4670 -2.6735
30 1 0.6946 3.0916 -5.4334
31 1 0.7286 4.6183 -3.0766
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000328578495.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:34
Heat of formation + Delta-G solvation = 20.887710 kcal
Electronic energy + Delta-G solvation = -14817.903264 eV
Core-core repulsion = 12293.748341 eV
Total energy + Delta-G solvation = -2524.154923 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-41.03092 -38.23650 -36.03772 -32.83862 -30.89445 -30.09506 -29.24349 -25.48502
-23.83072 -22.37939 -21.55260 -20.09702 -19.36189 -17.14556 -16.26416 -15.29921
-15.08244 -14.67099 -14.44496 -14.31996 -13.64598 -13.29264 -13.01965 -12.83349
-12.43255 -12.31388 -11.44333 -11.10749 -11.01745 -10.76091 -10.71295 -10.64719
-10.11518 -10.04006 -9.49775 -9.36554 -9.06761 -8.55147 -8.26227 -6.18958
-4.24351 1.62876 2.43985 2.84995 3.21047 3.29502 3.32117 3.51735
4.31282 4.53510 5.03523 5.06898 5.17416 5.25728 5.40132 5.49778
5.57377 5.67781 5.94064 6.03970 6.14787 6.18470 6.38569 6.43264
6.63895 6.78697 7.20300 7.38295 7.46405 7.76556 7.77411 8.01643
8.10742 8.80230 9.40862 10.92199
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.036128 B = 0.006851 C = 0.006522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.841874 B = 4085.985577 C = 4292.099492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.127 4.127
3 C 0.150 3.850
4 H 0.097 0.903
5 C 0.018 3.982
6 C -0.525 4.525
7 H 0.062 0.938
8 C 0.062 3.938
9 N -0.888 5.888
10 Si 0.897 3.103
11 H -0.271 1.271
12 H -0.282 1.282
13 H -0.283 1.283
14 N -0.325 5.325
15 C 0.137 3.863
16 C -0.369 4.369
17 C 0.418 3.582
18 O -0.494 6.494
19 C 0.078 3.922
20 N -0.300 5.300
21 H 0.055 0.945
22 H 0.047 0.953
23 H 0.054 0.946
24 H 0.103 0.897
25 H 0.065 0.935
26 H 0.028 0.972
27 H 0.024 0.976
28 H 0.263 0.737
29 H 0.179 0.821
30 H 0.096 0.904
31 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.264 1.682 -5.317 11.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.166 4.166
3 C 0.051 3.949
4 H 0.115 0.885
5 C -0.020 4.020
6 C -0.563 4.563
7 H 0.080 0.920
8 C -0.141 4.141
9 N -0.526 5.526
10 Si 0.725 3.275
11 H -0.195 1.195
12 H -0.208 1.208
13 H -0.209 1.209
14 N -0.100 5.100
15 C -0.018 4.018
16 C -0.382 4.382
17 C 0.279 3.721
18 O -0.370 6.370
19 C -0.109 4.109
20 N -0.120 5.120
21 H 0.074 0.926
22 H 0.066 0.934
23 H 0.073 0.927
24 H 0.121 0.879
25 H 0.083 0.917
26 H 0.046 0.954
27 H 0.042 0.958
28 H 0.073 0.927
29 H 0.196 0.804
30 H 0.113 0.887
31 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges -9.863 1.564 -4.252 10.854
hybrid contribution 0.435 -0.500 0.152 0.680
sum -9.429 1.064 -4.100 10.336
Atomic orbital electron populations
1.21863 0.96402 1.01368 1.01606 1.21918 0.94791 0.95204 1.04669
1.22120 1.00430 0.91872 0.80470 0.88508 1.19520 0.85513 0.98465
0.98493 1.21009 0.92268 1.44251 0.98815 0.91977 1.25007 0.96508
0.95258 0.97337 1.69977 1.00526 1.47575 1.34556 0.86452 0.78693
0.78680 0.83709 1.19549 1.20839 1.20853 1.49333 1.46048 1.06520
1.08134 1.23182 0.93923 0.99517 0.85189 1.21309 1.24143 0.94921
0.97807 1.22914 0.71547 0.90511 0.87117 1.90504 1.40983 1.29294
1.76171 1.24021 0.97956 0.98270 0.90701 1.77132 1.20917 0.94496
1.19410 0.92626 0.93423 0.92683 0.87867 0.91662 0.95401 0.95812
0.92691 0.80411 0.88741 0.79666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.19 9.82 37.16 0.36 -1.82 16
2 C -0.13 -2.13 4.99 -26.73 -0.13 -2.26 16
3 C 0.15 2.93 2.70 -67.94 -0.18 2.75 16
4 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16
5 C 0.02 0.44 4.76 -27.88 -0.13 0.31 16
6 C -0.52 -13.68 8.23 -34.44 -0.28 -13.96 16
7 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16
8 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16
9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16
10 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16
11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
14 N -0.32 -5.99 3.02 -54.24 -0.16 -6.16 16
15 C 0.14 2.32 9.71 -16.47 -0.16 2.16 16
16 C -0.37 -5.53 6.12 -105.15 -0.64 -6.17 16
17 C 0.42 5.49 11.70 34.13 0.40 5.89 16
18 O -0.49 -8.34 17.72 5.53 0.10 -8.24 16
19 C 0.08 1.13 12.03 -16.91 -0.20 0.92 16
20 N -0.30 -5.45 12.49 30.91 0.39 -5.06 16
21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
22 H 0.05 0.69 7.08 -51.93 -0.37 0.33 16
23 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16
24 H 0.10 1.81 6.97 -51.93 -0.36 1.44 16
25 H 0.06 1.05 6.85 -51.93 -0.36 0.70 16
26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
27 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16
28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
29 H 0.18 2.81 7.10 -52.49 -0.37 2.43 16
30 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16
31 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16
LS Contribution 273.37 15.07 4.12 4.12
Total: -1.00 -30.94 273.37 -4.86 -35.79
By element:
Atomic # 1 Polarization: 3.47 SS G_CDS: -3.94 Total: -0.46 kcal
Atomic # 6 Polarization: -9.54 SS G_CDS: -1.07 Total: -10.61 kcal
Atomic # 7 Polarization: -37.13 SS G_CDS: 0.96 Total: -36.17 kcal
Atomic # 8 Polarization: -8.34 SS G_CDS: 0.10 Total: -8.24 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -30.94 -4.86 -35.79 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000328578495.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal
(2) G-P(sol) polarization free energy of solvation -30.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds