Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47242 * 54.50967 * 3 2 1 5 5 C 1.52998 * 109.47363 * 174.51068 * 3 2 1 6 6 C 1.50703 * 109.46827 * 294.26740 * 5 3 2 7 7 H 1.07994 * 120.00214 * 354.92663 * 6 5 3 8 8 C 1.37885 * 119.99795 * 174.92656 * 6 5 3 9 9 N 1.31519 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99825 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47520 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47284 * 120.00041 * 10 8 6 13 13 H 1.48505 * 109.47139 * 239.99539 * 10 8 6 14 14 N 1.46500 * 109.47469 * 294.51186 * 3 2 1 15 15 C 1.34129 * 125.70352 * 324.71932 * 14 3 2 16 16 C 1.38457 * 107.36937 * 179.84860 * 15 14 3 17 17 C 1.46666 * 126.47361 * 180.13677 * 16 15 14 18 18 O 1.21311 * 120.00166 * 0.30048 * 17 16 15 19 19 C 1.41555 * 107.04435 * 0.40461 * 16 15 14 20 20 N 1.30364 * 107.98890 * 359.75117 * 19 16 15 21 21 H 1.08999 * 109.47803 * 175.09092 * 1 2 3 22 22 H 1.09002 * 109.46928 * 55.08183 * 1 2 3 23 23 H 1.09008 * 109.46393 * 295.08950 * 1 2 3 24 24 H 1.08995 * 109.47069 * 120.00824 * 2 1 3 25 25 H 1.09005 * 109.46631 * 240.00240 * 2 1 3 26 26 H 1.08995 * 109.47076 * 54.26374 * 5 3 2 27 27 H 1.08998 * 109.47657 * 174.27017 * 5 3 2 28 28 H 0.96998 * 119.99956 * 180.02562 * 9 8 6 29 29 H 1.08000 * 126.31380 * 359.97438 * 15 14 3 30 30 H 1.08001 * 119.99749 * 180.29600 * 17 16 15 31 31 H 1.08003 * 126.00233 * 179.77069 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5987 1.9839 0.8368 5 6 3.5638 1.4445 0.1380 6 6 3.9464 0.9029 1.4913 7 1 3.1800 0.6655 2.2142 8 6 5.2749 0.7104 1.8064 9 7 6.2081 0.9991 0.9258 10 14 5.7490 0.0384 3.4835 11 1 4.5223 -0.2043 4.2845 12 1 6.4905 -1.2371 3.3142 13 1 6.6113 1.0228 4.1855 14 7 1.6627 2.0939 -1.2567 15 6 1.6052 1.5019 -2.4589 16 6 1.2057 2.4615 -3.3735 17 6 1.0049 2.2639 -4.8129 18 8 1.1873 1.1708 -5.3064 19 6 1.0336 3.6706 -2.6579 20 7 1.3076 3.4391 -1.4046 21 1 -0.3635 -1.0238 -0.0879 22 1 -0.3633 0.5883 -0.8427 23 1 -0.3632 0.4358 0.9308 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 4.0000 0.8186 -0.6404 27 1 3.9365 2.4637 0.0360 28 1 7.1426 0.8633 1.1473 29 1 1.8275 0.4670 -2.6735 30 1 0.6946 3.0916 -5.4334 31 1 0.7286 4.6183 -3.0766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328578495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 20.887710 kcal Electronic energy + Delta-G solvation = -14817.903264 eV Core-core repulsion = 12293.748341 eV Total energy + Delta-G solvation = -2524.154923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.03092 -38.23650 -36.03772 -32.83862 -30.89445 -30.09506 -29.24349 -25.48502 -23.83072 -22.37939 -21.55260 -20.09702 -19.36189 -17.14556 -16.26416 -15.29921 -15.08244 -14.67099 -14.44496 -14.31996 -13.64598 -13.29264 -13.01965 -12.83349 -12.43255 -12.31388 -11.44333 -11.10749 -11.01745 -10.76091 -10.71295 -10.64719 -10.11518 -10.04006 -9.49775 -9.36554 -9.06761 -8.55147 -8.26227 -6.18958 -4.24351 1.62876 2.43985 2.84995 3.21047 3.29502 3.32117 3.51735 4.31282 4.53510 5.03523 5.06898 5.17416 5.25728 5.40132 5.49778 5.57377 5.67781 5.94064 6.03970 6.14787 6.18470 6.38569 6.43264 6.63895 6.78697 7.20300 7.38295 7.46405 7.76556 7.77411 8.01643 8.10742 8.80230 9.40862 10.92199 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.006851 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.841874 B = 4085.985577 C = 4292.099492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.150 3.850 4 H 0.097 0.903 5 C 0.018 3.982 6 C -0.525 4.525 7 H 0.062 0.938 8 C 0.062 3.938 9 N -0.888 5.888 10 Si 0.897 3.103 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.283 1.283 14 N -0.325 5.325 15 C 0.137 3.863 16 C -0.369 4.369 17 C 0.418 3.582 18 O -0.494 6.494 19 C 0.078 3.922 20 N -0.300 5.300 21 H 0.055 0.945 22 H 0.047 0.953 23 H 0.054 0.946 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.179 0.821 30 H 0.096 0.904 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 1.682 -5.317 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.115 0.885 5 C -0.020 4.020 6 C -0.563 4.563 7 H 0.080 0.920 8 C -0.141 4.141 9 N -0.526 5.526 10 Si 0.725 3.275 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.209 1.209 14 N -0.100 5.100 15 C -0.018 4.018 16 C -0.382 4.382 17 C 0.279 3.721 18 O -0.370 6.370 19 C -0.109 4.109 20 N -0.120 5.120 21 H 0.074 0.926 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.196 0.804 30 H 0.113 0.887 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.863 1.564 -4.252 10.854 hybrid contribution 0.435 -0.500 0.152 0.680 sum -9.429 1.064 -4.100 10.336 Atomic orbital electron populations 1.21863 0.96402 1.01368 1.01606 1.21918 0.94791 0.95204 1.04669 1.22120 1.00430 0.91872 0.80470 0.88508 1.19520 0.85513 0.98465 0.98493 1.21009 0.92268 1.44251 0.98815 0.91977 1.25007 0.96508 0.95258 0.97337 1.69977 1.00526 1.47575 1.34556 0.86452 0.78693 0.78680 0.83709 1.19549 1.20839 1.20853 1.49333 1.46048 1.06520 1.08134 1.23182 0.93923 0.99517 0.85189 1.21309 1.24143 0.94921 0.97807 1.22914 0.71547 0.90511 0.87117 1.90504 1.40983 1.29294 1.76171 1.24021 0.97956 0.98270 0.90701 1.77132 1.20917 0.94496 1.19410 0.92626 0.93423 0.92683 0.87867 0.91662 0.95401 0.95812 0.92691 0.80411 0.88741 0.79666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.82 37.16 0.36 -1.82 16 2 C -0.13 -2.13 4.99 -26.73 -0.13 -2.26 16 3 C 0.15 2.93 2.70 -67.94 -0.18 2.75 16 4 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 5 C 0.02 0.44 4.76 -27.88 -0.13 0.31 16 6 C -0.52 -13.68 8.23 -34.44 -0.28 -13.96 16 7 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 8 C 0.06 1.67 5.46 -17.81 -0.10 1.58 16 9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 N -0.32 -5.99 3.02 -54.24 -0.16 -6.16 16 15 C 0.14 2.32 9.71 -16.47 -0.16 2.16 16 16 C -0.37 -5.53 6.12 -105.15 -0.64 -6.17 16 17 C 0.42 5.49 11.70 34.13 0.40 5.89 16 18 O -0.49 -8.34 17.72 5.53 0.10 -8.24 16 19 C 0.08 1.13 12.03 -16.91 -0.20 0.92 16 20 N -0.30 -5.45 12.49 30.91 0.39 -5.06 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.69 7.08 -51.93 -0.37 0.33 16 23 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.10 1.81 6.97 -51.93 -0.36 1.44 16 25 H 0.06 1.05 6.85 -51.93 -0.36 0.70 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.18 2.81 7.10 -52.49 -0.37 2.43 16 30 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.19 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -30.94 273.37 -4.86 -35.79 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.94 Total: -0.46 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.07 Total: -10.61 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.96 Total: -36.17 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.10 Total: -8.24 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.94 -4.86 -35.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds