Wall clock time and date at job start Mon Mar 30 2020 02:43:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52991 * 109.47500 * 2 1
4 4 H 1.09004 * 109.47242 * 54.50967 * 3 2 1
5 5 C 1.52998 * 109.47363 * 174.51068 * 3 2 1
6 6 C 1.50703 * 109.46827 * 294.26740 * 5 3 2
7 7 H 1.07994 * 120.00214 * 354.92663 * 6 5 3
8 8 C 1.37885 * 119.99795 * 174.92656 * 6 5 3
9 9 N 1.31519 * 119.99952 * 359.97438 * 8 6 5
10 10 Si 1.86795 * 119.99825 * 180.02562 * 8 6 5
11 11 H 1.48494 * 109.47520 * 359.97438 * 10 8 6
12 12 H 1.48505 * 109.47284 * 120.00041 * 10 8 6
13 13 H 1.48505 * 109.47139 * 239.99539 * 10 8 6
14 14 N 1.46500 * 109.47469 * 294.51186 * 3 2 1
15 15 C 1.34129 * 125.70352 * 324.71932 * 14 3 2
16 16 C 1.38457 * 107.36937 * 179.84860 * 15 14 3
17 17 C 1.46666 * 126.47361 * 180.13677 * 16 15 14
18 18 O 1.21311 * 120.00166 * 0.30048 * 17 16 15
19 19 C 1.41555 * 107.04435 * 0.40461 * 16 15 14
20 20 N 1.30364 * 107.98890 * 359.75117 * 19 16 15
21 21 H 1.08999 * 109.47803 * 175.09092 * 1 2 3
22 22 H 1.09002 * 109.46928 * 55.08183 * 1 2 3
23 23 H 1.09008 * 109.46393 * 295.08950 * 1 2 3
24 24 H 1.08995 * 109.47069 * 120.00824 * 2 1 3
25 25 H 1.09005 * 109.46631 * 240.00240 * 2 1 3
26 26 H 1.08995 * 109.47076 * 54.26374 * 5 3 2
27 27 H 1.08998 * 109.47657 * 174.27017 * 5 3 2
28 28 H 0.96998 * 119.99956 * 180.02562 * 9 8 6
29 29 H 1.08000 * 126.31380 * 359.97438 * 15 14 3
30 30 H 1.08001 * 119.99749 * 180.29600 * 17 16 15
31 31 H 1.08003 * 126.00233 * 179.77069 * 19 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5987 1.9839 0.8368
5 6 3.5638 1.4445 0.1380
6 6 3.9464 0.9029 1.4913
7 1 3.1800 0.6655 2.2142
8 6 5.2749 0.7104 1.8064
9 7 6.2081 0.9991 0.9258
10 14 5.7490 0.0384 3.4835
11 1 4.5223 -0.2043 4.2845
12 1 6.4905 -1.2371 3.3142
13 1 6.6113 1.0228 4.1855
14 7 1.6627 2.0939 -1.2567
15 6 1.6052 1.5019 -2.4589
16 6 1.2057 2.4615 -3.3735
17 6 1.0049 2.2639 -4.8129
18 8 1.1873 1.1708 -5.3064
19 6 1.0336 3.6706 -2.6579
20 7 1.3076 3.4391 -1.4046
21 1 -0.3635 -1.0238 -0.0879
22 1 -0.3633 0.5883 -0.8427
23 1 -0.3632 0.4358 0.9308
24 1 1.8933 -0.5139 0.8899
25 1 1.8933 -0.5138 -0.8901
26 1 4.0000 0.8186 -0.6404
27 1 3.9365 2.4637 0.0360
28 1 7.1426 0.8633 1.1473
29 1 1.8275 0.4670 -2.6735
30 1 0.6946 3.0916 -5.4334
31 1 0.7286 4.6183 -3.0766
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000328578495.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:33
Heat of formation + Delta-G solvation = 1.176694 kcal
Electronic energy + Delta-G solvation = -14818.757998 eV
Core-core repulsion = 12293.748341 eV
Total energy + Delta-G solvation = -2525.009657 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 222.111 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.31609 -39.42469 -37.56042 -34.80471 -32.16187 -31.42963 -30.93357 -27.17510
-25.12205 -24.06698 -22.84697 -21.37226 -20.73190 -18.84568 -17.89538 -16.77398
-16.45766 -16.07922 -15.85025 -15.64189 -14.92318 -14.77501 -14.47089 -14.25985
-14.18281 -13.60953 -13.09318 -12.89009 -12.66237 -12.36349 -12.19429 -11.94490
-11.74049 -11.66693 -11.40700 -10.65911 -10.58814 -10.47151 -9.57655 -8.27588
-6.40163 0.43514 1.23384 1.39844 1.40287 1.50542 1.54870 2.37828
2.40467 3.07440 3.43718 3.78051 3.81027 4.02234 4.12881 4.16858
4.43836 4.46737 4.56979 4.68521 4.81595 5.02484 5.06198 5.10084
5.25190 5.33346 5.37992 5.62883 5.69907 5.90536 6.11002 6.68568
6.74042 6.80715 7.30067 8.84996
Molecular weight = 222.11amu
Principal moments of inertia in cm(-1)
A = 0.036128 B = 0.006851 C = 0.006522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.841874 B = 4085.985577 C = 4292.099492
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.121 4.121
3 C 0.164 3.836
4 H 0.090 0.910
5 C 0.029 3.971
6 C -0.533 4.533
7 H 0.075 0.925
8 C 0.003 3.997
9 N -0.933 5.933
10 Si 0.969 3.031
11 H -0.255 1.255
12 H -0.278 1.278
13 H -0.283 1.283
14 N -0.343 5.343
15 C 0.117 3.883
16 C -0.369 4.369
17 C 0.429 3.571
18 O -0.533 6.533
19 C 0.098 3.902
20 N -0.343 5.343
21 H 0.077 0.923
22 H 0.042 0.958
23 H 0.059 0.941
24 H 0.094 0.906
25 H 0.065 0.935
26 H 0.000 1.000
27 H -0.018 1.018
28 H 0.265 0.735
29 H 0.180 0.820
30 H 0.159 0.841
31 H 0.237 0.763
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.903 1.913 -5.538 13.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.159 4.159
3 C 0.063 3.937
4 H 0.108 0.892
5 C -0.008 4.008
6 C -0.571 4.571
7 H 0.093 0.907
8 C -0.195 4.195
9 N -0.572 5.572
10 Si 0.793 3.207
11 H -0.178 1.178
12 H -0.204 1.204
13 H -0.209 1.209
14 N -0.119 5.119
15 C -0.037 4.037
16 C -0.382 4.382
17 C 0.293 3.707
18 O -0.411 6.411
19 C -0.090 4.090
20 N -0.162 5.162
21 H 0.096 0.904
22 H 0.061 0.939
23 H 0.078 0.922
24 H 0.113 0.887
25 H 0.084 0.916
26 H 0.018 0.982
27 H 0.000 1.000
28 H 0.073 0.927
29 H 0.197 0.803
30 H 0.175 0.825
31 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges -11.528 1.799 -4.477 12.497
hybrid contribution 0.928 -0.486 0.100 1.052
sum -10.600 1.314 -4.377 11.543
Atomic orbital electron populations
1.21755 0.93874 1.02740 1.01639 1.21836 0.96868 0.92989 1.04232
1.21690 0.96713 0.93822 0.81430 0.89169 1.19279 0.89273 0.95036
0.97259 1.21433 0.92729 1.43366 0.99577 0.90675 1.25985 0.96605
0.95591 1.01363 1.70123 1.00922 1.49253 1.36946 0.85330 0.78733
0.77784 0.78814 1.17823 1.20412 1.20866 1.49114 1.47753 1.07026
1.07974 1.23511 0.94509 1.00338 0.85379 1.21788 1.22882 0.94562
0.98938 1.23689 0.69646 0.91173 0.86235 1.90510 1.42698 1.31430
1.76449 1.24826 0.95220 0.99702 0.89218 1.77100 1.22950 0.94396
1.21797 0.90402 0.93915 0.92179 0.88713 0.91632 0.98188 1.00015
0.92670 0.80341 0.82462 0.74734
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.84 9.82 71.98 0.71 -3.13 16
2 C -0.12 -4.04 4.99 30.59 0.15 -3.89 16
3 C 0.16 6.58 2.70 44.99 0.12 6.70 16
4 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16
5 C 0.03 1.51 4.76 29.85 0.14 1.66 16
6 C -0.53 -28.39 8.23 25.60 0.21 -28.18 16
7 H 0.08 3.72 7.33 -2.91 -0.02 3.70 16
8 C 0.00 0.17 5.46 84.66 0.46 0.63 16
9 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16
10 Si 0.97 42.48 29.54 68.60 2.03 44.50 16
11 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16
12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16
13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16
14 N -0.34 -12.83 3.02 -325.51 -0.98 -13.81 16
15 C 0.12 3.94 9.71 84.39 0.82 4.76 16
16 C -0.37 -10.32 6.12 -20.21 -0.12 -10.45 16
17 C 0.43 9.89 11.70 70.02 0.82 10.71 16
18 O -0.53 -17.06 17.72 -3.12 -0.06 -17.11 16
19 C 0.10 2.56 12.03 85.73 1.03 3.59 16
20 N -0.34 -12.26 12.49 -56.14 -0.70 -12.96 16
21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16
22 H 0.04 1.19 7.08 -2.39 -0.02 1.17 16
23 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16
24 H 0.09 3.31 6.97 -2.39 -0.02 3.29 16
25 H 0.07 2.15 6.85 -2.38 -0.02 2.14 16
26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16
27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16
28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16
29 H 0.18 5.79 7.10 -2.91 -0.02 5.77 16
30 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16
31 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16
Total: -1.00 -69.86 273.37 6.03 -63.83
By element:
Atomic # 1 Polarization: 7.46 SS G_CDS: 1.11 Total: 8.57 kcal
Atomic # 6 Polarization: -21.95 SS G_CDS: 4.34 Total: -17.61 kcal
Atomic # 7 Polarization: -80.79 SS G_CDS: -1.40 Total: -82.19 kcal
Atomic # 8 Polarization: -17.06 SS G_CDS: -0.06 Total: -17.11 kcal
Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -69.86 6.03 -63.83 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000328578495.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal
(2) G-P(sol) polarization free energy of solvation -69.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.852 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.177 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds