Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47500 * 2 1 4 4 H 1.09004 * 109.47242 * 54.50967 * 3 2 1 5 5 C 1.52998 * 109.47363 * 174.51068 * 3 2 1 6 6 C 1.50703 * 109.46827 * 294.26740 * 5 3 2 7 7 H 1.07994 * 120.00214 * 354.92663 * 6 5 3 8 8 C 1.37885 * 119.99795 * 174.92656 * 6 5 3 9 9 N 1.31519 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99825 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47520 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47284 * 120.00041 * 10 8 6 13 13 H 1.48505 * 109.47139 * 239.99539 * 10 8 6 14 14 N 1.46500 * 109.47469 * 294.51186 * 3 2 1 15 15 C 1.34129 * 125.70352 * 324.71932 * 14 3 2 16 16 C 1.38457 * 107.36937 * 179.84860 * 15 14 3 17 17 C 1.46666 * 126.47361 * 180.13677 * 16 15 14 18 18 O 1.21311 * 120.00166 * 0.30048 * 17 16 15 19 19 C 1.41555 * 107.04435 * 0.40461 * 16 15 14 20 20 N 1.30364 * 107.98890 * 359.75117 * 19 16 15 21 21 H 1.08999 * 109.47803 * 175.09092 * 1 2 3 22 22 H 1.09002 * 109.46928 * 55.08183 * 1 2 3 23 23 H 1.09008 * 109.46393 * 295.08950 * 1 2 3 24 24 H 1.08995 * 109.47069 * 120.00824 * 2 1 3 25 25 H 1.09005 * 109.46631 * 240.00240 * 2 1 3 26 26 H 1.08995 * 109.47076 * 54.26374 * 5 3 2 27 27 H 1.08998 * 109.47657 * 174.27017 * 5 3 2 28 28 H 0.96998 * 119.99956 * 180.02562 * 9 8 6 29 29 H 1.08000 * 126.31380 * 359.97438 * 15 14 3 30 30 H 1.08001 * 119.99749 * 180.29600 * 17 16 15 31 31 H 1.08003 * 126.00233 * 179.77069 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5987 1.9839 0.8368 5 6 3.5638 1.4445 0.1380 6 6 3.9464 0.9029 1.4913 7 1 3.1800 0.6655 2.2142 8 6 5.2749 0.7104 1.8064 9 7 6.2081 0.9991 0.9258 10 14 5.7490 0.0384 3.4835 11 1 4.5223 -0.2043 4.2845 12 1 6.4905 -1.2371 3.3142 13 1 6.6113 1.0228 4.1855 14 7 1.6627 2.0939 -1.2567 15 6 1.6052 1.5019 -2.4589 16 6 1.2057 2.4615 -3.3735 17 6 1.0049 2.2639 -4.8129 18 8 1.1873 1.1708 -5.3064 19 6 1.0336 3.6706 -2.6579 20 7 1.3076 3.4391 -1.4046 21 1 -0.3635 -1.0238 -0.0879 22 1 -0.3633 0.5883 -0.8427 23 1 -0.3632 0.4358 0.9308 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 4.0000 0.8186 -0.6404 27 1 3.9365 2.4637 0.0360 28 1 7.1426 0.8633 1.1473 29 1 1.8275 0.4670 -2.6735 30 1 0.6946 3.0916 -5.4334 31 1 0.7286 4.6183 -3.0766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328578495.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = 1.176694 kcal Electronic energy + Delta-G solvation = -14818.757998 eV Core-core repulsion = 12293.748341 eV Total energy + Delta-G solvation = -2525.009657 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.31609 -39.42469 -37.56042 -34.80471 -32.16187 -31.42963 -30.93357 -27.17510 -25.12205 -24.06698 -22.84697 -21.37226 -20.73190 -18.84568 -17.89538 -16.77398 -16.45766 -16.07922 -15.85025 -15.64189 -14.92318 -14.77501 -14.47089 -14.25985 -14.18281 -13.60953 -13.09318 -12.89009 -12.66237 -12.36349 -12.19429 -11.94490 -11.74049 -11.66693 -11.40700 -10.65911 -10.58814 -10.47151 -9.57655 -8.27588 -6.40163 0.43514 1.23384 1.39844 1.40287 1.50542 1.54870 2.37828 2.40467 3.07440 3.43718 3.78051 3.81027 4.02234 4.12881 4.16858 4.43836 4.46737 4.56979 4.68521 4.81595 5.02484 5.06198 5.10084 5.25190 5.33346 5.37992 5.62883 5.69907 5.90536 6.11002 6.68568 6.74042 6.80715 7.30067 8.84996 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.006851 C = 0.006522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.841874 B = 4085.985577 C = 4292.099492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.164 3.836 4 H 0.090 0.910 5 C 0.029 3.971 6 C -0.533 4.533 7 H 0.075 0.925 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.969 3.031 11 H -0.255 1.255 12 H -0.278 1.278 13 H -0.283 1.283 14 N -0.343 5.343 15 C 0.117 3.883 16 C -0.369 4.369 17 C 0.429 3.571 18 O -0.533 6.533 19 C 0.098 3.902 20 N -0.343 5.343 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.000 1.000 27 H -0.018 1.018 28 H 0.265 0.735 29 H 0.180 0.820 30 H 0.159 0.841 31 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 1.913 -5.538 13.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.063 3.937 4 H 0.108 0.892 5 C -0.008 4.008 6 C -0.571 4.571 7 H 0.093 0.907 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.793 3.207 11 H -0.178 1.178 12 H -0.204 1.204 13 H -0.209 1.209 14 N -0.119 5.119 15 C -0.037 4.037 16 C -0.382 4.382 17 C 0.293 3.707 18 O -0.411 6.411 19 C -0.090 4.090 20 N -0.162 5.162 21 H 0.096 0.904 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.018 0.982 27 H 0.000 1.000 28 H 0.073 0.927 29 H 0.197 0.803 30 H 0.175 0.825 31 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.528 1.799 -4.477 12.497 hybrid contribution 0.928 -0.486 0.100 1.052 sum -10.600 1.314 -4.377 11.543 Atomic orbital electron populations 1.21755 0.93874 1.02740 1.01639 1.21836 0.96868 0.92989 1.04232 1.21690 0.96713 0.93822 0.81430 0.89169 1.19279 0.89273 0.95036 0.97259 1.21433 0.92729 1.43366 0.99577 0.90675 1.25985 0.96605 0.95591 1.01363 1.70123 1.00922 1.49253 1.36946 0.85330 0.78733 0.77784 0.78814 1.17823 1.20412 1.20866 1.49114 1.47753 1.07026 1.07974 1.23511 0.94509 1.00338 0.85379 1.21788 1.22882 0.94562 0.98938 1.23689 0.69646 0.91173 0.86235 1.90510 1.42698 1.31430 1.76449 1.24826 0.95220 0.99702 0.89218 1.77100 1.22950 0.94396 1.21797 0.90402 0.93915 0.92179 0.88713 0.91632 0.98188 1.00015 0.92670 0.80341 0.82462 0.74734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.82 71.98 0.71 -3.13 16 2 C -0.12 -4.04 4.99 30.59 0.15 -3.89 16 3 C 0.16 6.58 2.70 44.99 0.12 6.70 16 4 H 0.09 3.68 8.14 -2.39 -0.02 3.66 16 5 C 0.03 1.51 4.76 29.85 0.14 1.66 16 6 C -0.53 -28.39 8.23 25.60 0.21 -28.18 16 7 H 0.08 3.72 7.33 -2.91 -0.02 3.70 16 8 C 0.00 0.17 5.46 84.66 0.46 0.63 16 9 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 10 Si 0.97 42.48 29.54 68.60 2.03 44.50 16 11 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 14 N -0.34 -12.83 3.02 -325.51 -0.98 -13.81 16 15 C 0.12 3.94 9.71 84.39 0.82 4.76 16 16 C -0.37 -10.32 6.12 -20.21 -0.12 -10.45 16 17 C 0.43 9.89 11.70 70.02 0.82 10.71 16 18 O -0.53 -17.06 17.72 -3.12 -0.06 -17.11 16 19 C 0.10 2.56 12.03 85.73 1.03 3.59 16 20 N -0.34 -12.26 12.49 -56.14 -0.70 -12.96 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 1.19 7.08 -2.39 -0.02 1.17 16 23 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.09 3.31 6.97 -2.39 -0.02 3.29 16 25 H 0.07 2.15 6.85 -2.38 -0.02 2.14 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 27 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.18 5.79 7.10 -2.91 -0.02 5.77 16 30 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.24 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -69.86 273.37 6.03 -63.83 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.11 Total: 8.57 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.34 Total: -17.61 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.40 Total: -82.19 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.86 6.03 -63.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578495.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.009 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds