Wall clock time and date at job start Mon Mar 30 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47143 * 2 1 4 4 C 1.50705 * 109.46914 * 240.00314 * 2 1 3 5 5 H 1.07996 * 119.99796 * 240.00239 * 4 2 1 6 6 C 1.37875 * 120.00111 * 59.99850 * 4 2 1 7 7 N 1.31517 * 119.99721 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47176 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46767 * 120.00359 * 8 6 4 11 11 H 1.48503 * 109.47183 * 240.00428 * 8 6 4 12 12 N 1.46896 * 109.47084 * 120.00584 * 2 1 3 13 13 C 1.46901 * 110.99787 * 274.99732 * 12 2 1 14 14 C 1.50701 * 109.46971 * 179.97438 * 13 12 2 15 15 C 1.38093 * 119.57911 * 95.00491 * 14 13 12 16 16 C 1.38782 * 119.28607 * 180.02562 * 15 14 13 17 17 C 1.38423 * 118.48510 * 359.97438 * 16 15 14 18 18 C 1.38872 * 119.11479 * 0.02562 * 17 16 15 19 19 O 1.35677 * 119.68503 * 180.02562 * 18 17 16 20 20 N 1.31933 * 119.58506 * 275.29127 * 14 13 12 21 21 H 1.09000 * 109.47139 * 59.99593 * 1 2 3 22 22 H 1.09001 * 109.46841 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46769 * 299.99934 * 1 2 3 24 24 H 0.97002 * 119.99637 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99968 * 38.94970 * 12 2 1 26 26 H 1.09001 * 109.47266 * 60.00345 * 13 12 2 27 27 H 1.08997 * 109.47107 * 299.99885 * 13 12 2 28 28 H 1.07997 * 120.36190 * 0.03714 * 15 14 13 29 29 H 1.07998 * 120.76087 * 179.97438 * 16 15 14 30 30 H 1.08000 * 120.44337 * 180.02562 * 17 16 15 31 31 H 0.96700 * 114.00259 * 89.99862 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6040 10 1 1.1677 -1.5864 -4.8166 11 1 3.1473 -0.1856 -4.8161 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2224 2.3468 14 6 2.5874 -0.5221 3.5559 15 6 3.9319 -0.4828 3.8683 16 6 4.3904 -1.1711 4.9828 17 6 3.4755 -1.8762 5.7458 18 6 2.1380 -1.8715 5.3722 19 8 1.2314 -2.5583 6.1119 20 7 1.7402 -1.2078 4.2993 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1620 -3.4843 25 1 1.4495 -1.4980 1.4099 26 1 1.0872 0.6161 2.5526 27 1 2.7590 1.0460 2.1182 28 1 4.6194 0.0776 3.2521 29 1 5.4369 -1.1570 5.2489 30 1 3.7976 -2.4226 6.6199 31 1 0.8319 -2.0406 6.8244 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379628867.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:55 Heat of formation + Delta-G solvation = -31.673444 kcal Electronic energy + Delta-G solvation = -14520.797533 eV Core-core repulsion = 11994.363388 eV Total energy + Delta-G solvation = -2526.434146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40498 -38.44789 -37.47241 -34.71169 -33.41393 -32.05639 -29.78171 -27.27737 -26.31959 -24.21611 -22.92225 -22.12873 -19.63005 -18.43851 -17.54501 -17.19224 -16.79472 -16.57046 -15.90822 -15.52367 -14.89342 -14.52872 -14.03868 -13.80552 -13.55141 -13.22200 -12.97432 -12.86716 -12.65940 -12.60791 -12.35639 -12.17981 -11.92276 -11.08450 -10.84101 -10.48983 -10.35683 -9.79668 -9.04087 -8.09667 -6.20861 0.05715 0.30901 1.43135 1.44677 1.57384 2.44371 2.58857 2.75319 3.18763 3.57833 3.86670 3.87504 4.16459 4.21593 4.50425 4.55914 4.68039 4.72601 4.81293 4.89031 5.07255 5.16798 5.27480 5.37027 5.65070 5.67667 5.78934 6.24046 6.57842 6.66959 6.69305 6.91611 7.02601 7.48734 8.96347 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045796 B = 0.005682 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.258899 B = 4926.400424 C = 5114.064065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.109 3.891 14 C 0.145 3.855 15 C -0.168 4.168 16 C -0.052 4.052 17 C -0.184 4.184 18 C 0.290 3.710 19 O -0.494 6.494 20 N -0.538 5.538 21 H 0.065 0.935 22 H 0.026 0.974 23 H 0.023 0.977 24 H 0.262 0.738 25 H 0.327 0.673 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.152 0.848 29 H 0.179 0.821 30 H 0.170 0.830 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -2.234 16.879 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.030 0.970 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.307 5.307 13 C -0.021 4.021 14 C 0.008 3.992 15 C -0.188 4.188 16 C -0.077 4.077 17 C -0.205 4.205 18 C 0.111 3.889 19 O -0.304 6.304 20 N -0.259 5.259 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.170 0.830 29 H 0.197 0.803 30 H 0.187 0.813 31 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 5.747 -2.535 16.036 17.222 hybrid contribution -0.519 0.206 -0.272 0.621 sum 5.228 -2.329 15.764 16.771 Atomic orbital electron populations 1.22248 1.00220 0.99025 1.00087 1.18997 0.89931 0.93156 0.87177 0.96978 1.21436 1.30496 1.12454 0.90968 0.92860 1.25718 0.95411 0.95881 1.01869 1.70014 1.37990 1.24214 1.24019 0.85433 0.78039 0.78567 0.79101 1.19480 1.20689 1.20408 1.60801 1.57745 1.09172 1.02953 1.20831 0.99395 0.94642 0.87239 1.20922 0.90762 0.93630 0.93924 1.22210 0.95488 1.02017 0.99090 1.21945 1.01763 0.92163 0.91870 1.22374 0.92261 1.02344 1.03533 1.19488 0.88569 0.91181 0.89703 1.84745 1.58896 1.38920 1.47866 1.66823 1.42309 1.09339 1.07385 0.91591 0.95447 0.95823 0.92914 0.85644 0.95319 0.89214 0.83002 0.80348 0.81255 0.72279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.91 8.94 71.98 0.64 -7.27 16 2 C 0.22 11.25 2.57 44.17 0.11 11.36 16 3 H 0.01 0.69 7.80 -2.39 -0.02 0.67 16 4 C -0.51 -29.27 8.84 25.60 0.23 -29.04 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.52 5.30 84.65 0.45 0.97 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.68 -30.45 6.22 -499.45 -3.11 -33.56 16 13 C 0.11 4.10 5.79 85.56 0.50 4.60 16 14 C 0.14 4.76 6.29 42.51 0.27 5.03 16 15 C -0.17 -4.31 9.71 22.37 0.22 -4.10 16 16 C -0.05 -0.99 10.17 22.44 0.23 -0.76 16 17 C -0.18 -3.69 10.04 22.47 0.23 -3.47 16 18 C 0.29 7.85 7.74 84.78 0.66 8.50 16 19 O -0.49 -11.51 13.56 -89.95 -1.22 -12.73 16 20 N -0.54 -18.21 10.30 -296.97 -3.06 -21.27 16 21 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 22 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 23 H 0.02 1.06 7.45 -2.39 -0.02 1.05 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.33 14.99 8.46 -89.69 -0.76 14.23 16 26 H 0.03 1.13 7.44 -2.39 -0.02 1.11 16 27 H 0.09 3.19 7.95 -2.39 -0.02 3.17 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 30 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.42 5.12 9.06 -74.06 -0.67 4.44 16 Total: -1.00 -68.27 270.33 -1.87 -70.14 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -0.28 Total: 18.41 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.52 Total: -14.18 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -5.92 Total: -108.20 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.22 Total: -12.73 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.27 -1.87 -70.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379628867.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.466 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds