Wall clock time and date at job start Mon Mar 30 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47096 * 2 1 4 4 C 1.50705 * 109.47368 * 120.00547 * 2 1 3 5 5 H 1.07995 * 120.00049 * 119.99289 * 4 2 1 6 6 C 1.37877 * 119.99611 * 299.99968 * 4 2 1 7 7 N 1.31516 * 120.00156 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99888 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47679 * 89.99531 * 8 6 4 10 10 H 1.48504 * 109.47365 * 209.99517 * 8 6 4 11 11 H 1.48502 * 109.47413 * 329.99277 * 8 6 4 12 12 N 1.46903 * 109.46628 * 239.99894 * 2 1 3 13 13 C 1.46902 * 110.99806 * 85.00261 * 12 2 1 14 14 C 1.50691 * 109.47243 * 179.97438 * 13 12 2 15 15 C 1.38085 * 119.58646 * 95.02210 * 14 13 12 16 16 C 1.38784 * 119.29420 * 179.97438 * 15 14 13 17 17 C 1.38424 * 118.48103 * 359.74525 * 16 15 14 18 18 C 1.38879 * 119.11183 * 0.49490 * 17 16 15 19 19 O 1.35677 * 119.68343 * 179.77049 * 18 17 16 20 20 N 1.31942 * 119.58389 * 274.99779 * 14 13 12 21 21 H 1.09005 * 109.46795 * 299.99232 * 1 2 3 22 22 H 1.08996 * 109.47255 * 59.99900 * 1 2 3 23 23 H 1.09003 * 109.47493 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 25 25 H 1.00904 * 110.99758 * 208.94936 * 12 2 1 26 26 H 1.09000 * 109.47357 * 59.99285 * 13 12 2 27 27 H 1.09001 * 109.46766 * 299.99666 * 13 12 2 28 28 H 1.08008 * 120.35502 * 359.95265 * 15 14 13 29 29 H 1.07999 * 120.76320 * 180.02562 * 16 15 14 30 30 H 1.07998 * 120.44483 * 180.24926 * 17 16 15 31 31 H 0.96700 * 114.00259 * 269.72871 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5444 4.4118 10 1 1.3446 -0.9492 5.1123 11 1 2.4880 -2.5656 3.7121 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5883 -0.5215 -3.5558 15 6 1.6861 -1.0595 -4.4521 16 6 2.1587 -1.7431 -5.5636 17 6 3.5274 -1.8562 -5.7362 18 6 4.3763 -1.2943 -4.7916 19 8 5.7199 -1.4024 -4.9469 20 7 3.8877 -0.6502 -3.7447 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.7096 1.1616 3.4845 25 1 2.9173 -1.1205 -1.0288 26 1 2.7587 1.0462 -2.1183 27 1 1.0869 0.6163 -2.5525 28 1 0.6239 -0.9498 -4.2897 29 1 1.4743 -2.1730 -6.2799 30 1 3.9298 -2.3780 -6.5919 31 1 6.1019 -2.1876 -4.5315 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379628868.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:57 Heat of formation + Delta-G solvation = -32.717076 kcal Electronic energy + Delta-G solvation = -14523.757741 eV Core-core repulsion = 11997.278340 eV Total energy + Delta-G solvation = -2526.479401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40790 -38.42011 -37.41541 -34.73529 -33.41541 -32.02043 -29.88522 -27.43863 -26.31597 -24.20868 -22.96283 -21.73380 -19.64276 -18.58374 -17.55852 -17.20643 -16.93213 -16.42329 -15.94113 -15.57542 -15.03763 -14.50790 -14.03521 -13.83252 -13.53473 -13.14835 -12.98407 -12.80793 -12.71756 -12.55727 -12.23854 -12.17087 -11.94748 -10.93294 -10.83824 -10.59295 -10.35970 -9.79166 -9.14356 -8.14447 -6.28726 0.05496 0.30840 1.41900 1.42308 1.53415 2.40006 2.51990 2.84957 3.14175 3.51955 3.86502 3.87511 4.16067 4.21351 4.51269 4.55431 4.69478 4.78775 4.85152 5.09036 5.16354 5.19965 5.26752 5.46252 5.63042 5.65848 5.84803 6.21476 6.38844 6.64975 6.68279 6.92108 7.02569 7.41253 8.91272 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041277 B = 0.005938 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.177527 B = 4714.058393 C = 5139.790622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.030 1.030 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.109 3.891 14 C 0.144 3.856 15 C -0.166 4.166 16 C -0.051 4.051 17 C -0.184 4.184 18 C 0.289 3.711 19 O -0.495 6.495 20 N -0.541 5.541 21 H 0.057 0.943 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.264 0.736 25 H 0.329 0.671 26 H 0.019 0.981 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.181 0.819 30 H 0.170 0.830 31 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 -6.346 -15.784 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.013 1.013 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.193 1.193 12 N -0.304 5.304 13 C -0.021 4.021 14 C 0.007 3.993 15 C -0.186 4.186 16 C -0.077 4.077 17 C -0.204 4.204 18 C 0.110 3.890 19 O -0.305 6.305 20 N -0.262 5.262 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.146 0.854 26 H 0.037 0.963 27 H 0.111 0.889 28 H 0.173 0.827 29 H 0.198 0.802 30 H 0.188 0.812 31 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 2.168 -5.612 -15.546 16.670 hybrid contribution 0.790 -0.220 1.066 1.345 sum 2.957 -5.832 -14.480 15.888 Atomic orbital electron populations 1.21532 0.96937 0.99175 0.99421 1.18989 0.93263 0.90746 0.86462 1.01282 1.21553 1.31841 1.12756 0.91710 0.92617 1.25720 0.95103 0.95702 1.01980 1.70016 1.37305 1.23933 1.24270 0.85475 0.78002 0.78989 0.78657 1.20275 1.20501 1.19309 1.60781 1.31999 1.32509 1.05065 1.20838 0.99955 0.92897 0.88412 1.20898 0.87339 0.95593 0.95426 1.22206 1.01992 0.99296 0.95137 1.21958 0.95315 0.94118 0.96262 1.22376 0.94066 1.02235 1.01768 1.19502 0.85193 0.93896 0.90424 1.84713 1.16642 1.51720 1.77452 1.66825 1.17229 1.18276 1.23828 0.92397 0.95240 0.95016 0.92719 0.85408 0.96253 0.88875 0.82733 0.80178 0.81223 0.72296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.58 9.19 71.98 0.66 -4.92 16 2 C 0.21 11.20 2.60 44.17 0.11 11.31 16 3 H -0.03 -1.77 7.80 -2.39 -0.02 -1.78 16 4 C -0.54 -30.51 8.59 25.60 0.22 -30.29 16 5 H 0.06 3.11 7.62 -2.91 -0.02 3.09 16 6 C 0.01 0.81 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.25 11.32 21.45 0.24 -53.01 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.11 16 9 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.67 -30.03 6.29 -499.46 -3.14 -33.17 16 13 C 0.11 4.17 5.79 85.55 0.50 4.67 16 14 C 0.14 4.79 6.29 42.50 0.27 5.06 16 15 C -0.17 -4.18 9.71 22.36 0.22 -3.96 16 16 C -0.05 -0.96 10.17 22.45 0.23 -0.73 16 17 C -0.18 -3.69 10.04 22.47 0.23 -3.46 16 18 C 0.29 7.98 7.74 84.78 0.66 8.64 16 19 O -0.50 -11.90 13.56 -89.95 -1.22 -13.12 16 20 N -0.54 -18.78 10.30 -296.99 -3.06 -21.84 16 21 H 0.06 3.16 6.07 -2.38 -0.01 3.14 16 22 H 0.03 1.27 7.45 -2.39 -0.02 1.25 16 23 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.33 15.21 8.22 -89.69 -0.74 14.47 16 26 H 0.02 0.81 8.06 -2.39 -0.02 0.79 16 27 H 0.09 3.29 7.33 -2.39 -0.02 3.27 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.42 5.91 9.06 -74.06 -0.67 5.24 16 Total: -1.00 -68.32 270.00 -1.87 -70.20 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.26 Total: 17.26 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 3.54 Total: -12.42 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.96 Total: -108.02 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.22 Total: -13.12 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -68.32 -1.87 -70.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379628868.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.479 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds