Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46971 * 2 1 4 4 H 1.09003 * 109.47052 * 54.81015 * 3 2 1 5 5 C 1.50697 * 109.47138 * 174.80896 * 3 2 1 6 6 H 1.08007 * 119.99748 * 114.55212 * 5 3 2 7 7 C 1.37874 * 120.00175 * 294.55676 * 5 3 2 8 8 N 1.31520 * 120.00060 * 350.48173 * 7 5 3 9 9 Si 1.86800 * 120.00121 * 170.48529 * 7 5 3 10 10 H 1.48497 * 109.46966 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46999 * 119.99843 * 9 7 5 12 12 H 1.48501 * 109.47080 * 239.99833 * 9 7 5 13 13 C 1.50695 * 109.47007 * 294.81234 * 3 2 1 14 14 O 1.21348 * 119.99866 * 270.00060 * 13 3 2 15 15 C 1.46505 * 120.00410 * 89.99902 * 13 3 2 16 16 C 1.37846 * 126.37450 * 180.32100 * 15 13 3 17 17 N 1.35207 * 106.67798 * 180.11826 * 16 15 13 18 18 C 1.46501 * 126.07056 * 179.84810 * 17 16 15 19 19 C 1.35906 * 107.85911 * 359.58917 * 17 16 15 20 20 N 1.30071 * 109.31073 * 0.26265 * 19 17 16 21 21 H 1.08993 * 109.46935 * 306.16839 * 1 2 3 22 22 H 1.08998 * 109.46718 * 66.17342 * 1 2 3 23 23 H 1.09002 * 109.46859 * 186.16987 * 1 2 3 24 24 H 1.08999 * 109.47150 * 239.99642 * 2 1 3 25 25 H 1.08997 * 109.46904 * 119.99906 * 2 1 3 26 26 H 0.96999 * 119.99971 * 180.02562 * 8 7 5 27 27 H 1.08003 * 126.66521 * 359.97438 * 16 15 13 28 28 H 1.08989 * 109.47061 * 269.71926 * 18 17 16 29 29 H 1.09000 * 109.46847 * 29.72436 * 18 17 16 30 30 H 1.09001 * 109.46636 * 149.71388 * 18 17 16 31 31 H 1.08001 * 125.33867 * 180.22497 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9825 0.8399 5 6 3.5415 1.4445 0.1285 6 1 4.1526 1.8080 -0.6844 7 6 4.1352 0.9821 1.2839 8 7 3.3987 0.7160 2.3406 9 14 5.9854 0.7338 1.3484 10 1 6.5803 1.1021 0.0386 11 1 6.5632 1.5920 2.4138 12 1 6.2837 -0.6906 1.6441 13 6 1.6453 2.1148 -1.2896 14 8 2.3858 2.0675 -2.2499 15 6 0.3677 2.8255 -1.3842 16 6 -0.1248 3.4777 -2.4942 17 7 -1.3243 3.9924 -2.1415 18 6 -2.2150 4.7733 -3.0035 19 6 -1.5595 3.6519 -0.8470 20 7 -0.5558 2.9588 -0.3953 21 1 -0.3633 0.6065 0.8296 22 1 -0.3633 0.4151 -0.9401 23 1 -0.3633 -1.0217 0.1105 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.8164 0.3911 3.1535 27 1 0.3553 3.5631 -3.4579 28 1 -1.9776 5.8326 -2.9067 29 1 -2.0805 4.4640 -4.0400 30 1 -3.2496 4.6039 -2.7052 31 1 -2.4412 3.9161 -0.2819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379640400.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = 16.084500 kcal Electronic energy + Delta-G solvation = -15083.945634 eV Core-core repulsion = 12559.582429 eV Total energy + Delta-G solvation = -2524.363206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.73098 -38.04003 -34.21498 -33.76185 -31.48219 -29.37897 -27.72100 -27.06249 -24.00443 -22.40785 -21.02965 -20.24390 -18.35279 -16.85728 -16.12054 -15.67498 -14.92862 -14.50460 -13.99113 -13.75073 -13.57340 -13.16533 -12.88764 -12.63039 -12.50846 -12.01513 -11.36228 -11.24143 -10.77339 -10.49096 -10.08281 -9.90950 -9.79971 -9.59626 -9.43678 -8.80293 -8.28868 -8.21516 -8.15110 -5.90952 -3.90775 1.89907 2.78101 2.81897 3.39939 3.47336 3.55201 4.15373 4.52991 4.57468 4.78308 4.91017 4.96217 5.15057 5.37460 5.43238 5.67197 6.26043 6.37497 6.41996 6.58533 6.73775 6.90587 7.05570 7.26763 7.30234 7.41602 7.80306 7.88284 8.07955 8.21852 8.44765 8.89081 9.14514 9.70864 11.18515 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.044406 B = 0.007593 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.395856 B = 3686.939422 C = 3924.233537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C 0.019 3.981 4 H 0.067 0.933 5 C -0.509 4.509 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.444 3.556 14 O -0.478 6.478 15 C -0.067 4.067 16 C 0.004 3.996 17 N -0.465 5.465 18 C 0.073 3.927 19 C 0.164 3.836 20 N -0.431 5.431 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.028 0.972 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.259 0.741 27 H 0.182 0.818 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 6.486 -7.987 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C 0.000 4.000 4 H 0.085 0.915 5 C -0.547 4.547 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C 0.322 3.678 14 O -0.352 6.352 15 C -0.195 4.195 16 C -0.134 4.134 17 N -0.149 5.149 18 C -0.070 4.070 19 C -0.119 4.119 20 N -0.149 5.149 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.199 0.801 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.338 6.139 -7.585 15.730 hybrid contribution 0.629 0.320 -0.667 0.971 sum -11.709 6.458 -8.252 15.713 Atomic orbital electron populations 1.21849 0.98247 0.98949 1.00879 1.21349 0.92432 0.98086 1.01607 1.19074 0.97079 0.93051 0.90818 0.91541 1.21153 0.90251 1.42170 1.01097 0.91686 1.24925 0.98015 0.95644 0.95246 1.70005 1.35181 1.45378 1.02016 0.86561 0.85924 0.77746 0.77997 1.19638 1.21189 1.20968 1.22334 0.80183 0.74336 0.90947 1.90378 1.51128 1.53345 1.40374 1.22295 0.99615 1.07151 0.90403 1.23144 0.87592 1.01084 1.01538 1.45286 1.16252 1.40824 1.12519 1.22042 0.93983 0.96009 0.94948 1.25256 1.01678 1.02151 0.82851 1.70784 1.00641 1.14376 1.29096 0.92142 0.94858 0.95246 0.94681 0.90001 0.93119 0.80136 0.90535 0.89741 0.89422 0.77824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.69 37.16 0.32 -2.72 16 2 C -0.10 -2.43 5.28 -26.73 -0.14 -2.57 16 3 C 0.02 0.51 1.82 -92.93 -0.17 0.34 16 4 H 0.07 1.93 7.87 -51.93 -0.41 1.52 16 5 C -0.51 -15.08 8.27 -34.44 -0.28 -15.36 16 6 H 0.06 1.99 7.10 -52.48 -0.37 1.62 16 7 C 0.06 1.83 5.16 -17.82 -0.09 1.74 16 8 N -0.89 -26.29 12.16 55.43 0.67 -25.62 16 9 Si 0.89 22.36 29.55 -169.99 -5.02 17.33 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.44 10.96 5.70 -30.98 -0.18 10.78 16 14 O -0.48 -12.51 16.47 5.50 0.09 -12.42 16 15 C -0.07 -1.37 5.66 -82.85 -0.47 -1.84 16 16 C 0.00 0.06 11.33 -16.21 -0.18 -0.12 16 17 N -0.47 -5.74 3.12 -125.41 -0.39 -6.13 16 18 C 0.07 0.47 11.14 59.85 0.67 1.14 16 19 C 0.16 2.27 12.53 -89.94 -1.13 1.14 16 20 N -0.43 -8.26 9.78 -10.90 -0.11 -8.37 16 21 H 0.06 1.32 7.89 -51.93 -0.41 0.91 16 22 H 0.03 0.69 6.54 -51.93 -0.34 0.35 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 2.22 6.80 -51.93 -0.35 1.87 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.18 2.51 8.06 -52.48 -0.42 2.08 16 28 H 0.08 0.41 8.14 -51.94 -0.42 -0.01 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.21 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -34.69 269.32 -6.33 -41.02 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.98 Total: -2.42 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.65 Total: -7.47 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.18 Total: -40.11 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.69 -6.33 -41.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379640400.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.108 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds