Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36120 * 117.00042 * 2 1 4 4 C 1.40841 * 119.84823 * 179.97438 * 3 2 1 5 5 C 1.35867 * 119.65553 * 180.02562 * 4 3 2 6 6 C 1.41431 * 119.36792 * 359.97438 * 5 4 3 7 7 N 1.31803 * 120.15259 * 180.02562 * 6 5 4 8 8 C 1.46505 * 120.00078 * 186.11650 * 7 6 5 9 9 C 1.53002 * 109.46567 * 245.63282 * 8 7 6 10 10 C 1.50706 * 109.46936 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99476 * 359.97438 * 10 9 8 12 12 C 1.37868 * 119.99943 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00326 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00008 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46959 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47321 * 120.00027 * 14 12 10 17 17 H 1.48503 * 109.47211 * 239.99990 * 14 12 10 18 18 N 1.37265 * 119.69164 * 0.28045 * 6 5 4 19 19 H 0.97002 * 119.83280 * 179.70331 * 18 6 5 20 20 C 1.35301 * 119.84797 * 0.02562 * 3 2 1 21 21 H 1.08995 * 109.47693 * 300.00346 * 1 2 3 22 22 H 1.09011 * 109.47173 * 60.00105 * 1 2 3 23 23 H 1.09004 * 109.47296 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.17353 * 0.04229 * 4 3 2 25 25 H 1.08005 * 120.31437 * 180.02562 * 5 4 3 26 26 H 1.08996 * 109.47230 * 125.63291 * 8 7 6 27 27 H 1.08997 * 109.46946 * 5.62594 * 8 7 6 28 28 H 1.09006 * 109.47149 * 299.99266 * 9 8 7 29 29 H 1.08994 * 109.47762 * 59.99763 * 9 8 7 30 30 H 0.97004 * 120.00218 * 179.97438 * 13 12 10 31 31 H 1.08002 * 119.66849 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 3.4536 1.2828 0.0005 5 6 4.0663 2.4955 0.0011 6 6 3.2791 3.6704 0.0005 7 7 3.8573 4.8548 0.0005 8 6 3.0450 6.0666 0.1351 9 6 3.1291 6.8828 -1.1563 10 6 2.2940 8.1297 -1.0177 11 1 1.7568 8.3205 -0.1004 12 6 2.2160 9.0266 -2.0618 13 7 2.8706 8.7945 -3.1785 14 14 1.1803 10.5718 -1.8902 15 1 0.5498 10.5983 -0.5460 16 1 2.0448 11.7679 -2.0546 17 1 0.1235 10.5777 -2.9335 18 7 1.9100 3.5715 0.0053 19 1 1.3681 4.3760 0.0093 20 6 1.3070 2.3456 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 4.0421 0.3773 0.0003 25 1 5.1444 2.5615 0.0011 26 1 3.4182 6.6635 0.9672 27 1 2.0077 5.7896 0.3229 28 1 4.1665 7.1599 -1.3441 29 1 2.7560 6.2859 -1.9884 30 1 2.8153 9.4254 -3.9133 31 1 0.2290 2.2800 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379654858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = 17.693443 kcal Electronic energy + Delta-G solvation = -14364.355635 eV Core-core repulsion = 11840.062198 eV Total energy + Delta-G solvation = -2524.293437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47684 -38.29604 -34.75681 -33.00947 -32.78603 -30.22601 -28.00507 -27.22935 -25.02783 -23.10885 -21.83414 -20.13783 -19.04408 -17.10154 -16.59001 -15.86357 -15.79734 -15.50016 -14.51995 -14.26607 -14.09194 -13.90789 -13.24774 -12.70000 -12.21395 -12.07191 -11.75934 -11.34788 -11.20096 -11.02241 -10.70348 -10.29499 -10.04703 -9.75843 -9.22757 -9.07834 -8.64948 -8.35020 -6.64918 -6.00666 -4.05089 1.10879 2.20233 3.18344 3.29005 3.36361 3.40050 3.52152 3.87241 4.42900 4.65638 4.85913 4.86922 5.00979 5.16382 5.31568 5.34165 5.49379 5.66397 6.03128 6.18473 6.34169 6.44493 6.60576 6.93767 7.04889 7.30862 7.57708 7.69139 7.81843 8.00452 8.37818 8.70560 9.02944 9.59052 11.10096 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.044276 B = 0.005285 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.248467 B = 5296.706436 C = 5658.538964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.000 4.000 4 C -0.060 4.060 5 C -0.110 4.110 6 C 0.364 3.636 7 N -0.582 5.582 8 C 0.058 3.942 9 C 0.030 3.970 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 N -0.630 5.630 19 H 0.418 0.582 20 C 0.033 3.967 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.137 0.863 25 H 0.152 0.848 26 H 0.069 0.931 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.011 0.989 30 H 0.260 0.740 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -16.883 6.601 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C -0.051 4.051 4 C -0.084 4.084 5 C -0.132 4.132 6 C 0.096 3.904 7 N -0.308 5.308 8 C -0.072 4.072 9 C -0.007 4.007 10 C -0.564 4.564 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 N -0.257 5.257 19 H 0.259 0.741 20 C -0.094 4.094 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.155 0.845 25 H 0.170 0.830 26 H 0.087 0.913 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.880 -16.495 6.383 18.107 hybrid contribution -2.055 1.353 -0.044 2.461 sum -5.935 -15.141 6.340 17.455 Atomic orbital electron populations 1.22966 0.79382 1.03677 1.00948 1.86089 1.20337 1.25727 1.90757 1.17797 0.92095 0.83832 1.11410 1.20467 0.91206 0.98456 0.98298 1.20713 1.00307 0.88452 1.03745 1.20085 0.79752 0.95064 0.95501 1.73453 1.34264 0.96736 1.26382 1.22133 0.92643 0.90616 1.01779 1.19095 0.97976 0.93424 0.90239 1.21250 1.29242 1.05686 1.00181 0.92665 1.25020 0.95789 0.98218 0.95301 1.69995 1.42113 1.36523 1.04450 0.86526 0.80126 0.83259 0.78012 1.19755 1.20876 1.21026 1.42676 1.07548 1.07537 1.67902 0.74144 1.21515 0.98137 0.85338 1.04427 0.93100 0.92979 0.88511 0.84491 0.82991 0.91263 0.96815 0.95571 0.97064 0.92988 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.32 -3.57 10.51 -20.12 -0.21 -3.79 16 3 C 0.00 0.00 6.66 -39.64 -0.26 -0.26 16 4 C -0.06 -0.75 10.00 -39.45 -0.39 -1.14 16 5 C -0.11 -1.60 10.00 -39.22 -0.39 -1.99 16 6 C 0.36 6.47 7.47 -156.32 -1.17 5.30 16 7 N -0.58 -12.45 10.57 -60.36 -0.64 -13.09 16 8 C 0.06 1.33 6.22 -4.04 -0.03 1.30 16 9 C 0.03 0.84 5.30 -27.88 -0.15 0.69 16 10 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 11 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.54 13.29 55.43 0.74 -26.80 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 N -0.63 -9.77 5.26 -12.03 -0.06 -9.84 16 19 H 0.42 6.55 6.26 -40.82 -0.26 6.29 16 20 C 0.03 0.41 10.22 -16.47 -0.17 0.24 16 21 H 0.05 0.33 7.64 -51.93 -0.40 -0.07 16 22 H 0.05 0.36 7.64 -51.92 -0.40 -0.04 16 23 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.15 1.96 8.06 -52.48 -0.42 1.54 16 26 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.01 0.29 5.52 -51.93 -0.29 0.00 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.15 1.39 6.14 -52.49 -0.32 1.07 16 LS Contribution 268.65 15.07 4.05 4.05 Total: -1.00 -33.81 268.65 -6.86 -40.67 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.74 Total: 0.58 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.98 Total: -8.62 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.03 Total: -49.72 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.21 Total: -3.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.81 -6.86 -40.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379654858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.365 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds