Wall clock time and date at job start Mon Mar 30 2020 03:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36120 * 117.00042 * 2 1 4 4 C 1.40841 * 119.84823 * 179.97438 * 3 2 1 5 5 C 1.35867 * 119.65553 * 180.02562 * 4 3 2 6 6 C 1.41431 * 119.36792 * 359.97438 * 5 4 3 7 7 N 1.31803 * 120.15259 * 180.02562 * 6 5 4 8 8 C 1.46505 * 120.00078 * 186.11650 * 7 6 5 9 9 C 1.53002 * 109.46567 * 245.63282 * 8 7 6 10 10 C 1.50706 * 109.46936 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99476 * 359.97438 * 10 9 8 12 12 C 1.37868 * 119.99943 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00326 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00008 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46959 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47321 * 120.00027 * 14 12 10 17 17 H 1.48503 * 109.47211 * 239.99990 * 14 12 10 18 18 N 1.37265 * 119.69164 * 0.28045 * 6 5 4 19 19 H 0.97002 * 119.83280 * 179.70331 * 18 6 5 20 20 C 1.35301 * 119.84797 * 0.02562 * 3 2 1 21 21 H 1.08995 * 109.47693 * 300.00346 * 1 2 3 22 22 H 1.09011 * 109.47173 * 60.00105 * 1 2 3 23 23 H 1.09004 * 109.47296 * 179.97438 * 1 2 3 24 24 H 1.07994 * 120.17353 * 0.04229 * 4 3 2 25 25 H 1.08005 * 120.31437 * 180.02562 * 5 4 3 26 26 H 1.08996 * 109.47230 * 125.63291 * 8 7 6 27 27 H 1.08997 * 109.46946 * 5.62594 * 8 7 6 28 28 H 1.09006 * 109.47149 * 299.99266 * 9 8 7 29 29 H 1.08994 * 109.47762 * 59.99763 * 9 8 7 30 30 H 0.97004 * 120.00218 * 179.97438 * 13 12 10 31 31 H 1.08002 * 119.66849 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0469 1.2128 0.0000 4 6 3.4536 1.2828 0.0005 5 6 4.0663 2.4955 0.0011 6 6 3.2791 3.6704 0.0005 7 7 3.8573 4.8548 0.0005 8 6 3.0450 6.0666 0.1351 9 6 3.1291 6.8828 -1.1563 10 6 2.2940 8.1297 -1.0177 11 1 1.7568 8.3205 -0.1004 12 6 2.2160 9.0266 -2.0618 13 7 2.8706 8.7945 -3.1785 14 14 1.1803 10.5718 -1.8902 15 1 0.5498 10.5983 -0.5460 16 1 2.0448 11.7679 -2.0546 17 1 0.1235 10.5777 -2.9335 18 7 1.9100 3.5715 0.0053 19 1 1.3681 4.3760 0.0093 20 6 1.3070 2.3456 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 4.0421 0.3773 0.0003 25 1 5.1444 2.5615 0.0011 26 1 3.4182 6.6635 0.9672 27 1 2.0077 5.7896 0.3229 28 1 4.1665 7.1599 -1.3441 29 1 2.7560 6.2859 -1.9884 30 1 2.8153 9.4254 -3.9133 31 1 0.2290 2.2800 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379654858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:40 Heat of formation + Delta-G solvation = -6.648793 kcal Electronic energy + Delta-G solvation = -14365.411193 eV Core-core repulsion = 11840.062198 eV Total energy + Delta-G solvation = -2525.348995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.60735 -39.33019 -36.41270 -34.79195 -34.11452 -31.99223 -29.24449 -28.16412 -26.77653 -24.54126 -23.23282 -21.85159 -20.11629 -18.65726 -18.15800 -17.22249 -16.69691 -16.64868 -16.53373 -15.42773 -15.25333 -15.07004 -14.77886 -14.42349 -13.83990 -13.46706 -13.00871 -12.88994 -12.66248 -12.40021 -12.23926 -12.06918 -11.84159 -11.38559 -11.14769 -10.65017 -10.37558 -10.15052 -8.25973 -7.91649 -6.38963 0.00272 1.00602 1.37342 1.39330 1.52699 2.07542 2.37220 2.56547 2.67176 3.07917 3.54904 3.79028 3.97624 4.21336 4.39415 4.48585 4.48947 4.60338 4.70621 4.84288 4.98097 5.09378 5.17232 5.36275 5.41786 5.53977 5.75371 5.80283 6.11535 6.23207 6.54966 6.77688 7.26398 7.33582 8.88174 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.044276 B = 0.005285 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.248467 B = 5296.706436 C = 5658.538964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.002 3.998 4 C -0.033 4.033 5 C -0.142 4.142 6 C 0.372 3.628 7 N -0.645 5.645 8 C 0.077 3.923 9 C 0.041 3.959 10 C -0.546 4.546 11 H 0.066 0.934 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.258 1.258 16 H -0.278 1.278 17 H -0.275 1.275 18 N -0.629 5.629 19 H 0.416 0.584 20 C 0.027 3.973 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.119 0.881 24 H 0.170 0.830 25 H 0.162 0.838 26 H 0.058 0.942 27 H 0.031 0.969 28 H -0.016 1.016 29 H -0.020 1.020 30 H 0.265 0.735 31 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -18.345 7.429 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C -0.049 4.049 4 C -0.057 4.057 5 C -0.164 4.164 6 C 0.107 3.893 7 N -0.376 5.376 8 C -0.053 4.053 9 C 0.003 3.997 10 C -0.585 4.585 11 H 0.084 0.916 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.798 3.202 15 H -0.182 1.182 16 H -0.203 1.203 17 H -0.200 1.200 18 N -0.253 5.253 19 H 0.256 0.744 20 C -0.099 4.099 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.138 0.862 24 H 0.187 0.813 25 H 0.179 0.821 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.002 0.998 29 H -0.002 1.002 30 H 0.074 0.926 31 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.971 -18.018 7.227 20.311 hybrid contribution -1.526 1.482 -0.318 2.151 sum -7.497 -16.536 6.909 19.426 Atomic orbital electron populations 1.23309 0.77180 1.05672 1.01913 1.86103 1.22597 1.24569 1.90455 1.18007 0.92397 0.84561 1.09941 1.20855 0.91702 0.98749 0.94387 1.20809 1.00812 0.87996 1.06802 1.20598 0.80876 0.95135 0.92666 1.73444 1.34220 0.97004 1.32900 1.21672 0.93965 0.91324 0.98371 1.18909 0.94962 0.93813 0.92018 1.21659 1.29597 1.06406 1.00803 0.91616 1.26092 0.97023 1.02158 0.94644 1.70151 1.43690 1.38137 1.05501 0.85261 0.78156 0.77981 0.78767 1.18187 1.20338 1.20030 1.42787 1.07010 1.08799 1.66733 0.74413 1.22061 0.99924 0.84067 1.03889 0.91792 0.92223 0.86234 0.81261 0.82087 0.92350 0.95141 0.99778 1.00208 0.92637 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.80 113.37 1.11 1.26 16 2 O -0.32 -6.10 10.51 -94.91 -1.00 -7.10 16 3 C 0.00 0.05 6.66 22.23 0.15 0.20 16 4 C -0.03 -0.73 10.00 22.36 0.22 -0.51 16 5 C -0.14 -4.00 10.00 22.51 0.23 -3.77 16 6 C 0.37 13.34 7.47 134.40 1.00 14.34 16 7 N -0.64 -28.80 10.57 -344.88 -3.65 -32.44 16 8 C 0.08 3.68 6.22 86.38 0.54 4.22 16 9 C 0.04 2.39 5.30 29.85 0.16 2.55 16 10 C -0.55 -32.54 9.11 25.60 0.23 -32.31 16 11 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 12 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 13 N -0.93 -59.40 13.29 21.44 0.28 -59.11 16 14 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 15 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 N -0.63 -18.96 5.26 -191.96 -1.01 -19.97 16 19 H 0.42 12.85 6.26 -92.71 -0.58 12.27 16 20 C 0.03 0.60 10.22 83.27 0.85 1.45 16 21 H 0.06 0.56 7.64 -2.39 -0.02 0.54 16 22 H 0.06 0.59 7.64 -2.38 -0.02 0.57 16 23 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 25 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 26 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.03 1.30 5.52 -2.39 -0.01 1.29 16 28 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 29 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 30 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.19 2.74 6.14 -2.91 -0.02 2.73 16 Total: -1.00 -75.99 268.65 2.17 -73.82 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.56 Total: 9.97 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.95 Total: -12.20 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.37 Total: -111.52 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -1.00 Total: -7.10 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -75.99 2.17 -73.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379654858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.173 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds