Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38749 * 120.47659 * 0.02562 * 3 2 1 5 5 N 1.31811 * 120.67912 * 179.97438 * 4 3 2 6 6 C 1.31871 * 121.78643 * 0.02562 * 5 4 3 7 7 C 1.38220 * 120.88687 * 0.02562 * 6 5 4 8 8 C 1.38582 * 119.21696 * 359.67438 * 7 6 5 9 9 C 1.50705 * 120.80955 * 180.32019 * 8 7 6 10 10 H 1.09003 * 109.46895 * 145.27193 * 9 8 7 11 11 C 1.53006 * 109.47141 * 265.27252 * 9 8 7 12 12 N 1.46500 * 109.47352 * 25.27149 * 9 8 7 13 13 C 1.36934 * 120.00152 * 155.00012 * 12 9 8 14 14 H 1.07999 * 119.99705 * 359.97438 * 13 12 9 15 15 C 1.38811 * 120.00104 * 180.02562 * 13 12 9 16 16 N 1.31618 * 119.99920 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00328 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46676 * 59.99467 * 17 15 13 19 19 H 1.48498 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46959 * 299.99996 * 17 15 13 21 21 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 24 24 H 1.07996 * 119.65898 * 0.02562 * 4 3 2 25 25 H 1.07991 * 119.56248 * 179.97438 * 6 5 4 26 26 H 1.07990 * 120.38928 * 179.97438 * 7 6 5 27 27 H 1.08995 * 109.46777 * 180.02562 * 11 9 8 28 28 H 1.09009 * 109.46869 * 299.99977 * 11 9 8 29 29 H 1.08997 * 109.46718 * 59.99781 * 11 9 8 30 30 H 0.97003 * 119.99521 * 335.00604 * 12 9 8 31 31 H 0.96996 * 120.00086 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8941 3.5575 0.0010 6 6 3.2078 3.6723 0.0006 7 6 4.0179 2.5523 -0.0010 8 6 3.4344 1.2954 0.0047 9 6 4.2834 0.0502 0.0105 10 1 3.7902 -0.7231 0.5995 11 6 4.4725 -0.4447 -1.4249 12 7 5.5904 0.3531 0.5987 13 6 6.3277 -0.6443 1.1791 14 1 5.9454 -1.6540 1.2036 15 6 7.5659 -0.3572 1.7370 16 7 8.0316 0.8735 1.7076 17 14 8.5714 -1.7175 2.5294 18 1 8.8668 -2.7665 1.5206 19 1 9.8451 -1.1551 3.0457 20 1 7.8017 -2.3126 3.6514 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2213 2.3268 0.0014 25 1 3.6568 4.6544 0.0006 26 1 5.0928 2.6557 -0.0018 27 1 5.0861 -1.3455 -1.4207 28 1 3.4999 -0.6701 -1.8626 29 1 4.9656 0.3286 -2.0138 30 1 5.9335 1.2601 0.5771 31 1 8.8967 1.0741 2.0978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379665765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = 10.999103 kcal Electronic energy + Delta-G solvation = -15010.440300 eV Core-core repulsion = 12485.856575 eV Total energy + Delta-G solvation = -2524.583725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46236 -37.85656 -35.87602 -32.61905 -30.51928 -30.15809 -28.23788 -27.41813 -24.36976 -23.28775 -22.43220 -20.13271 -18.05475 -17.37946 -16.39340 -15.88928 -15.71192 -14.59366 -14.20266 -13.91977 -13.59268 -13.44553 -13.27110 -12.50991 -12.26500 -11.81535 -11.76778 -11.52416 -11.28067 -10.83945 -10.77060 -10.51429 -10.10519 -9.70515 -9.17542 -9.11450 -8.86220 -8.15268 -7.01136 -5.78890 -3.07901 1.44212 1.61021 3.34932 3.44069 3.48272 3.49282 4.09590 4.55711 4.68845 4.86394 5.03082 5.12312 5.22679 5.33699 5.43595 5.55679 5.73230 5.75185 5.90877 6.10437 6.27828 6.32354 6.45863 6.62489 6.85006 6.91935 7.03901 7.42362 7.69289 8.20625 8.39752 9.50797 10.05008 10.40603 11.44060 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.007659 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.511440 B = 3655.115505 C = 4113.087071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.073 3.927 4 C 0.008 3.992 5 N -0.464 5.464 6 C 0.059 3.941 7 C -0.120 4.120 8 C -0.055 4.055 9 C 0.213 3.787 10 H 0.065 0.935 11 C -0.155 4.155 12 N -0.723 5.723 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.934 5.934 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.286 1.286 21 H 0.099 0.901 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.151 0.849 25 H 0.155 0.845 26 H 0.148 0.852 27 H 0.059 0.941 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.384 0.616 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 1.093 -4.618 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.026 3.974 4 C -0.149 4.149 5 N -0.174 5.174 6 C -0.099 4.099 7 C -0.140 4.140 8 C -0.065 4.065 9 C 0.104 3.896 10 H 0.083 0.917 11 C -0.215 4.215 12 N -0.367 5.367 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.582 5.582 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.213 1.213 21 H 0.118 0.882 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.168 0.832 25 H 0.172 0.828 26 H 0.166 0.834 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.582 1.480 -4.528 14.393 hybrid contribution 0.997 -1.016 0.476 1.501 sum -12.584 0.464 -4.052 13.229 Atomic orbital electron populations 1.23051 0.78884 1.03923 1.01133 1.86133 1.20791 1.26123 1.88657 1.19881 0.92613 0.85556 0.99396 1.22712 0.99948 0.87399 1.04888 1.67445 1.12425 1.26413 1.11161 1.22584 0.88761 0.98964 0.99541 1.22020 1.02403 0.91559 0.98024 1.20370 0.90675 0.97621 0.97807 1.19038 0.86339 0.90638 0.93624 0.91690 1.22343 0.99782 1.01505 0.97891 1.42547 1.15782 1.09755 1.68600 1.19200 0.98384 0.90076 1.29384 0.91043 1.24732 0.97916 0.96519 1.01655 1.69635 1.20174 1.17749 1.50674 0.86244 0.79524 0.81053 0.79229 1.21217 1.21663 1.21258 0.88235 0.92746 0.92798 0.83151 0.82762 0.83429 0.92171 0.94113 0.93475 0.78014 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.82 101.05 0.99 1.24 16 2 O -0.31 -4.61 9.77 -19.47 -0.19 -4.80 16 3 C 0.07 1.22 6.68 -39.07 -0.26 0.96 16 4 C 0.01 0.12 10.22 -17.37 -0.18 -0.05 16 5 N -0.46 -7.63 10.35 -13.13 -0.14 -7.76 16 6 C 0.06 0.95 11.18 -17.54 -0.20 0.75 16 7 C -0.12 -2.16 9.30 -39.46 -0.37 -2.52 16 8 C -0.06 -1.04 5.10 -104.17 -0.53 -1.58 16 9 C 0.21 4.49 2.88 -69.08 -0.20 4.30 16 10 H 0.07 1.43 7.71 -51.93 -0.40 1.03 16 11 C -0.15 -2.96 9.47 37.16 0.35 -2.60 16 12 N -0.72 -18.26 5.05 -54.55 -0.28 -18.53 16 13 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.48 7.68 -51.93 -0.40 0.08 16 23 H 0.05 0.45 7.68 -51.93 -0.40 0.05 16 24 H 0.15 1.79 6.32 -52.49 -0.33 1.45 16 25 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.15 2.75 6.21 -52.49 -0.33 2.43 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.38 9.98 5.50 -40.82 -0.22 9.76 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 267.06 15.07 4.02 4.02 Total: -1.00 -31.45 267.06 -5.25 -36.70 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.74 Total: 7.00 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.63 Total: -6.76 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.31 Total: -53.50 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.19 Total: -4.80 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.45 -5.25 -36.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379665765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.699 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds