Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38749 * 120.47659 * 0.02562 * 3 2 1 5 5 N 1.31811 * 120.67912 * 179.97438 * 4 3 2 6 6 C 1.31871 * 121.78643 * 0.02562 * 5 4 3 7 7 C 1.38220 * 120.88687 * 0.02562 * 6 5 4 8 8 C 1.38582 * 119.21696 * 359.67438 * 7 6 5 9 9 C 1.50705 * 120.80955 * 180.32019 * 8 7 6 10 10 H 1.09003 * 109.46895 * 145.27193 * 9 8 7 11 11 C 1.53006 * 109.47141 * 265.27252 * 9 8 7 12 12 N 1.46500 * 109.47352 * 25.27149 * 9 8 7 13 13 C 1.36934 * 120.00152 * 155.00012 * 12 9 8 14 14 H 1.07999 * 119.99705 * 359.97438 * 13 12 9 15 15 C 1.38811 * 120.00104 * 180.02562 * 13 12 9 16 16 N 1.31618 * 119.99920 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00328 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46676 * 59.99467 * 17 15 13 19 19 H 1.48498 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46959 * 299.99996 * 17 15 13 21 21 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 23 23 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 24 24 H 1.07996 * 119.65898 * 0.02562 * 4 3 2 25 25 H 1.07991 * 119.56248 * 179.97438 * 6 5 4 26 26 H 1.07990 * 120.38928 * 179.97438 * 7 6 5 27 27 H 1.08995 * 109.46777 * 180.02562 * 11 9 8 28 28 H 1.09009 * 109.46869 * 299.99977 * 11 9 8 29 29 H 1.08997 * 109.46718 * 59.99781 * 11 9 8 30 30 H 0.97003 * 119.99521 * 335.00604 * 12 9 8 31 31 H 0.96996 * 120.00086 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8941 3.5575 0.0010 6 6 3.2078 3.6723 0.0006 7 6 4.0179 2.5523 -0.0010 8 6 3.4344 1.2954 0.0047 9 6 4.2834 0.0502 0.0105 10 1 3.7902 -0.7231 0.5995 11 6 4.4725 -0.4447 -1.4249 12 7 5.5904 0.3531 0.5987 13 6 6.3277 -0.6443 1.1791 14 1 5.9454 -1.6540 1.2036 15 6 7.5659 -0.3572 1.7370 16 7 8.0316 0.8735 1.7076 17 14 8.5714 -1.7175 2.5294 18 1 8.8668 -2.7665 1.5206 19 1 9.8451 -1.1551 3.0457 20 1 7.8017 -2.3126 3.6514 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2213 2.3268 0.0014 25 1 3.6568 4.6544 0.0006 26 1 5.0928 2.6557 -0.0018 27 1 5.0861 -1.3455 -1.4207 28 1 3.4999 -0.6701 -1.8626 29 1 4.9656 0.3286 -2.0138 30 1 5.9335 1.2601 0.5771 31 1 8.8967 1.0741 2.0978 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379665765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -10.469163 kcal Electronic energy + Delta-G solvation = -15011.371234 eV Core-core repulsion = 12485.856575 eV Total energy + Delta-G solvation = -2525.514659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.71168 -39.00567 -37.57805 -34.50580 -32.14808 -31.44825 -29.98677 -28.31316 -26.20349 -24.84630 -23.72918 -21.69974 -19.69289 -18.80190 -17.78085 -17.32618 -16.75988 -16.43676 -15.68294 -15.30314 -15.00892 -14.93081 -14.71522 -14.14544 -13.86920 -13.24093 -13.07884 -12.77556 -12.69743 -12.62282 -12.33327 -12.24945 -11.96979 -11.70085 -11.06522 -10.44232 -10.38891 -9.37814 -9.05836 -7.95366 -5.24697 0.16742 0.27916 1.47509 1.50472 1.56523 2.31338 2.55209 2.81559 3.38602 3.52654 3.57551 3.83366 3.94662 4.08171 4.30138 4.41455 4.44446 4.60248 4.66756 4.70721 4.79820 4.82764 5.01206 5.06139 5.35653 5.43333 5.51700 5.60412 6.25934 6.31660 6.94816 7.33226 8.04245 8.30853 9.28066 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.007659 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.511440 B = 3655.115505 C = 4113.087071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.077 3.923 4 C 0.016 3.984 5 N -0.470 5.470 6 C 0.060 3.940 7 C -0.133 4.133 8 C -0.083 4.083 9 C 0.214 3.786 10 H 0.052 0.948 11 C -0.143 4.143 12 N -0.735 5.735 13 C -0.244 4.244 14 H 0.075 0.925 15 C -0.072 4.072 16 N -0.968 5.968 17 Si 0.973 3.027 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.279 1.279 21 H 0.121 0.879 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.188 0.812 25 H 0.181 0.819 26 H 0.131 0.869 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.377 0.623 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 0.720 -4.838 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.028 3.972 4 C -0.142 4.142 5 N -0.180 5.180 6 C -0.097 4.097 7 C -0.153 4.153 8 C -0.092 4.092 9 C 0.105 3.895 10 H 0.070 0.930 11 C -0.203 4.203 12 N -0.378 5.378 13 C -0.376 4.376 14 H 0.093 0.907 15 C -0.264 4.264 16 N -0.618 5.618 17 Si 0.802 3.198 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.206 1.206 21 H 0.139 0.861 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.205 0.795 25 H 0.198 0.802 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.212 0.788 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.499 1.084 -4.769 16.252 hybrid contribution 1.402 -0.923 0.509 1.754 sum -14.097 0.161 -4.260 14.727 Atomic orbital electron populations 1.23453 0.75977 1.06003 1.02666 1.86115 1.23785 1.25462 1.88318 1.19859 0.91825 0.86781 0.98699 1.23261 1.01534 0.86379 1.02996 1.67553 1.12302 1.26974 1.11188 1.22904 0.88697 0.99402 0.98702 1.21954 1.01871 0.92225 0.99228 1.20239 0.91842 0.96775 1.00324 1.19069 0.84778 0.91700 0.93930 0.92998 1.22172 1.00810 1.00629 0.96689 1.42713 1.17222 1.08985 1.68881 1.19568 0.98674 0.90778 1.28562 0.90712 1.25535 0.99218 0.98723 1.02971 1.69790 1.20363 1.19597 1.52092 0.85217 0.77675 0.78470 0.78428 1.20315 1.22027 1.20569 0.86107 0.91451 0.90876 0.79483 0.80244 0.85085 0.93348 0.91706 0.93805 0.78845 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.82 113.37 1.11 1.32 16 2 O -0.32 -9.11 9.77 -92.59 -0.90 -10.02 16 3 C 0.08 2.42 6.68 22.60 0.15 2.57 16 4 C 0.02 0.45 10.22 84.82 0.87 1.31 16 5 N -0.47 -14.35 10.35 -195.45 -2.02 -16.37 16 6 C 0.06 1.85 11.18 84.68 0.95 2.80 16 7 C -0.13 -4.80 9.30 22.35 0.21 -4.59 16 8 C -0.08 -3.10 5.10 -19.57 -0.10 -3.20 16 9 C 0.21 9.09 2.88 44.25 0.13 9.21 16 10 H 0.05 2.32 7.71 -2.39 -0.02 2.30 16 11 C -0.14 -5.43 9.47 71.98 0.68 -4.75 16 12 N -0.74 -37.98 5.05 -326.48 -1.65 -39.63 16 13 C -0.24 -13.76 9.93 84.03 0.83 -12.93 16 14 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 17 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.07 0.93 7.68 -2.39 -0.02 0.91 16 23 H 0.07 0.92 7.68 -2.39 -0.02 0.90 16 24 H 0.19 3.63 6.32 -2.91 -0.02 3.62 16 25 H 0.18 4.46 8.06 -2.92 -0.02 4.43 16 26 H 0.13 5.11 6.21 -2.92 -0.02 5.09 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.38 20.31 5.50 -92.71 -0.51 19.80 16 31 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -67.29 267.06 3.65 -63.63 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.62 Total: 24.79 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 5.30 Total: -11.95 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -3.39 Total: -114.83 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.90 Total: -10.02 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -67.29 3.65 -63.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379665765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.164 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds