Wall clock time and date at job start Mon Mar 30 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99992 * 2 1 4 4 C 1.52993 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47610 * 64.99798 * 4 3 2 6 6 C 1.31322 * 119.99691 * 114.87199 * 5 4 3 7 7 C 1.46257 * 119.88211 * 186.51221 * 6 5 4 8 8 C 1.35434 * 119.08769 * 179.97438 * 7 6 5 9 9 C 1.46648 * 118.84527 * 0.02562 * 8 7 6 10 10 C 1.41117 * 120.13720 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99877 * 202.23970 * 10 9 8 12 12 C 1.39623 * 119.99990 * 22.23205 * 10 9 8 13 13 N 1.31072 * 119.99949 * 18.63653 * 12 10 9 14 14 Si 1.86802 * 120.00062 * 198.62662 * 12 10 9 15 15 H 1.48504 * 109.46661 * 90.00630 * 14 12 10 16 16 H 1.48499 * 109.47241 * 210.00383 * 14 12 10 17 17 H 1.48497 * 109.47000 * 330.00444 * 14 12 10 18 18 C 1.39253 * 119.72599 * 359.97438 * 9 8 7 19 19 N 1.34552 * 120.89492 * 359.74282 * 18 9 8 20 20 H 0.96999 * 119.39541 * 180.26313 * 19 18 9 21 21 H 1.08995 * 109.46806 * 299.99642 * 1 2 3 22 22 H 1.08999 * 109.46985 * 60.00186 * 1 2 3 23 23 H 1.08998 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46593 * 60.00226 * 3 2 1 25 25 H 1.08998 * 109.46648 * 300.00082 * 3 2 1 26 26 H 1.09000 * 109.47319 * 185.00684 * 4 3 2 27 27 H 1.09005 * 109.47097 * 304.99988 * 4 3 2 28 28 H 1.08004 * 120.45207 * 359.95646 * 7 6 5 29 29 H 1.08003 * 120.57329 * 179.97438 * 8 7 6 30 30 H 0.96997 * 120.00238 * 179.97438 * 13 12 10 31 31 H 1.07998 * 119.55512 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9758 0.5643 -1.2527 6 6 4.7017 1.2502 -2.1054 7 6 5.0199 0.6810 -3.4145 8 6 5.7694 1.4025 -4.2817 9 6 6.2369 2.7320 -3.8763 10 6 7.0191 3.5075 -4.7585 11 1 7.6532 4.2913 -4.3712 12 6 6.9732 3.2614 -6.1321 13 7 5.9704 2.5909 -6.6447 14 14 8.3410 3.8879 -7.2394 15 1 9.4057 2.8578 -7.3420 16 1 7.7937 4.1704 -8.5907 17 1 8.9108 5.1335 -6.6658 18 6 5.9051 3.2266 -2.6175 19 7 5.1551 2.5028 -1.7666 20 1 4.9337 2.8700 -0.8966 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.9786 2.1764 0.0890 27 1 3.8514 0.5681 0.8410 28 1 4.6624 -0.3014 -3.6858 29 1 6.0189 1.0053 -5.2545 30 1 5.9383 2.4202 -7.5990 31 1 6.2506 4.2062 -2.3220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389229380.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:40 Heat of formation + Delta-G solvation = 4.692891 kcal Electronic energy + Delta-G solvation = -14472.115463 eV Core-core repulsion = 11947.258280 eV Total energy + Delta-G solvation = -2524.857183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.74158 -37.45899 -34.77911 -33.09489 -31.46807 -30.06259 -27.98254 -26.00872 -24.43837 -23.03128 -21.30491 -20.08320 -18.27502 -16.55739 -15.95484 -15.52336 -15.40932 -14.79962 -14.63152 -14.36666 -13.43513 -13.21214 -12.69606 -12.56602 -12.04835 -11.73180 -11.47153 -11.30437 -11.13535 -10.97280 -10.70915 -10.22421 -9.78591 -9.41196 -9.37401 -8.93764 -8.52985 -8.24583 -6.83471 -6.28230 -4.15254 2.43990 2.87932 3.08602 3.11163 3.31701 3.93264 4.07350 4.37789 4.46049 5.23199 5.34283 5.42362 5.46934 5.64356 5.67357 5.75557 5.82477 5.93882 6.19584 6.40433 6.54500 6.74664 6.79376 7.16067 7.37462 7.49937 7.51579 7.71034 8.15023 8.23770 8.56900 8.79000 8.93957 9.34625 10.21350 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.062458 B = 0.005487 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.192932 B = 5101.484408 C = 5306.230814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.072 3.928 4 C 0.067 3.933 5 N -0.661 5.661 6 C 0.403 3.597 7 C -0.191 4.191 8 C -0.007 4.007 9 C 0.036 3.964 10 C -0.458 4.458 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.816 5.816 14 Si 0.909 3.091 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.111 4.111 19 N -0.619 5.619 20 H 0.389 0.611 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.081 0.919 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.064 0.936 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.280 0.720 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 0.291 5.627 6.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.006 4.006 4 C -0.065 4.065 5 N -0.400 5.400 6 C 0.141 3.859 7 C -0.213 4.213 8 C -0.030 4.030 9 C 0.029 3.971 10 C -0.490 4.490 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.444 5.444 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.188 1.188 18 C -0.235 4.235 19 N -0.239 5.239 20 H 0.225 0.775 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.091 0.909 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.030 -0.735 5.483 6.844 hybrid contribution 0.452 1.671 -0.023 1.731 sum -3.578 0.935 5.461 6.595 Atomic orbital electron populations 1.22684 0.82573 1.02158 0.99225 1.88021 1.18127 1.27683 1.95108 1.22665 0.94917 0.84541 0.98486 1.21521 0.92173 0.96523 0.96263 1.73567 1.29853 1.30127 1.06449 1.21342 0.89977 0.80688 0.93887 1.21439 1.07466 1.01364 0.91061 1.22953 0.90134 0.92600 0.97348 1.18044 0.95736 0.92017 0.91302 1.19062 1.22802 1.16512 0.90586 0.90506 1.25769 0.95511 0.93948 0.98895 1.69862 1.26844 1.33410 1.14254 0.86289 0.81404 0.79971 0.78883 1.19427 1.20507 1.18843 1.21104 1.09284 0.97721 0.95352 1.41858 1.48142 1.16462 1.17397 0.77538 0.94930 0.94520 0.90075 0.94428 0.94039 0.95211 0.91768 0.85673 0.84332 0.90941 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.59 10.65 -35.23 -0.38 -6.97 16 3 C 0.07 1.19 6.28 37.15 0.23 1.43 16 4 C 0.07 1.23 6.72 -4.05 -0.03 1.20 16 5 N -0.66 -14.65 10.51 -58.93 -0.62 -15.27 16 6 C 0.40 9.12 7.62 -154.54 -1.18 7.95 16 7 C -0.19 -4.41 10.22 -37.36 -0.38 -4.79 16 8 C -0.01 -0.17 8.86 -37.19 -0.33 -0.50 16 9 C 0.04 0.88 5.71 -105.03 -0.60 0.28 16 10 C -0.46 -11.40 9.02 -37.97 -0.34 -11.75 16 11 H 0.08 1.84 7.91 -52.49 -0.42 1.43 16 12 C 0.07 1.76 5.17 -17.36 -0.09 1.67 16 13 N -0.82 -20.10 10.84 55.53 0.60 -19.50 16 14 Si 0.91 18.04 29.60 -169.99 -5.03 13.01 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 16 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 18 C -0.11 -2.50 10.93 -15.98 -0.17 -2.67 16 19 N -0.62 -12.93 5.17 -10.30 -0.05 -12.98 16 20 H 0.39 6.98 6.10 -40.82 -0.25 6.73 16 21 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.49 5.36 -51.93 -0.28 0.21 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.13 2.70 8.06 -52.48 -0.42 2.28 16 29 H 0.14 3.37 6.18 -52.48 -0.32 3.05 16 30 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 31 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 268.44 15.07 4.05 4.05 Total: -1.00 -27.74 268.44 -6.99 -34.73 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.78 Total: 8.60 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.78 Total: -5.67 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.07 Total: -47.75 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.38 Total: -6.97 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.74 -6.99 -34.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389229380.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.426 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds