Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.50707 * 109.47009 * 184.99986 * 3 2 1 6 6 H 1.07999 * 120.00020 * 240.00317 * 5 3 2 7 7 C 1.37879 * 119.99772 * 59.99744 * 5 3 2 8 8 N 1.31508 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99526 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47796 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46833 * 120.00486 * 9 7 5 12 12 H 1.48501 * 109.47094 * 239.99875 * 9 7 5 13 13 C 1.50704 * 109.47295 * 65.00435 * 3 2 1 14 14 O 1.21266 * 120.00447 * 94.99473 * 13 3 2 15 15 C 1.46996 * 119.99574 * 274.99703 * 13 3 2 16 16 C 1.41722 * 126.49685 * 179.97438 * 15 13 3 17 17 C 1.35280 * 105.54089 * 179.97438 * 16 15 13 18 18 N 1.35642 * 107.20753 * 0.02562 * 17 16 15 19 19 C 1.46498 * 124.91002 * 180.02562 * 18 17 16 20 20 N 1.28473 * 110.17796 * 359.74645 * 18 17 16 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 26 26 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 27 27 H 1.08001 * 127.22645 * 0.02562 * 16 15 13 28 28 H 1.07992 * 126.39642 * 180.02562 * 17 16 15 29 29 H 1.08995 * 109.47479 * 89.99737 * 19 18 17 30 30 H 1.09005 * 109.47350 * 209.99905 * 19 18 17 31 31 H 1.09002 * 109.46869 * 329.99470 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8803 -1.3811 10 1 6.5988 1.5445 -0.1930 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6159 -2.6091 13 6 1.6413 2.1163 1.2878 14 8 2.4157 2.1484 2.2204 15 6 0.3136 2.7345 1.4133 16 6 -0.2019 3.4001 2.5534 17 6 -1.4472 3.7998 2.2075 18 7 -1.6593 3.3928 0.9311 19 6 -2.8896 3.6249 0.1706 20 7 -0.6229 2.7793 0.4837 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.8293 -0.0603 -2.9502 27 1 0.2954 3.5562 3.4993 28 1 -2.1425 4.3418 2.8312 29 1 -2.8128 4.5711 -0.3649 30 1 -3.0339 2.8140 -0.5434 31 1 -3.7378 3.6621 0.8543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394796758.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = 16.805831 kcal Electronic energy + Delta-G solvation = -15197.683158 eV Core-core repulsion = 12673.351231 eV Total energy + Delta-G solvation = -2524.331927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.40703 -40.06060 -36.28198 -34.32969 -33.51966 -31.57748 -29.69557 -28.43263 -25.82725 -24.07135 -22.27087 -22.10351 -19.83901 -18.55867 -18.00514 -17.18740 -16.97824 -16.32711 -15.66031 -15.23776 -14.77667 -14.63347 -14.05635 -13.99732 -13.51701 -13.45957 -13.26759 -13.17640 -12.79235 -12.56799 -12.13753 -11.95173 -11.72399 -11.57822 -10.95914 -10.54578 -10.24570 -10.04712 -9.91632 -8.13193 -6.26920 0.42605 1.25347 1.39195 1.40260 1.54238 1.78446 2.30994 2.43335 3.13249 3.36289 3.76044 4.09244 4.45053 4.47749 4.52600 4.56900 4.66940 4.74590 4.77712 4.83236 4.99742 5.08126 5.26405 5.39255 5.46662 5.60378 5.74830 5.95248 6.04855 6.25077 6.74533 6.80659 7.13200 7.40106 8.91897 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.040683 B = 0.008055 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.084933 B = 3475.379280 C = 3759.405350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C 0.017 3.983 4 H 0.035 0.965 5 C -0.539 4.539 6 H 0.046 0.954 7 C 0.019 3.981 8 N -0.908 5.908 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.272 1.272 13 C 0.441 3.559 14 O -0.498 6.498 15 C -0.077 4.077 16 C -0.215 4.215 17 C 0.000 4.000 18 N -0.285 5.285 19 C 0.076 3.924 20 N -0.254 5.254 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.021 0.979 25 H 0.080 0.920 26 H 0.265 0.735 27 H 0.160 0.840 28 H 0.234 0.766 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 6.289 4.616 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C -0.002 4.002 4 H 0.053 0.947 5 C -0.577 4.577 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.547 5.547 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.198 1.198 12 H -0.197 1.197 13 C 0.320 3.680 14 O -0.372 6.372 15 C -0.233 4.233 16 C -0.243 4.243 17 C -0.142 4.142 18 N -0.075 5.075 19 C -0.062 4.062 20 N -0.093 5.093 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.250 0.750 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.425 5.913 3.769 16.944 hybrid contribution 1.389 0.129 0.531 1.492 sum -14.037 6.043 4.300 15.876 Atomic orbital electron populations 1.21729 0.95459 1.00235 1.00999 1.21276 0.94820 0.96529 1.01053 1.19015 0.95886 0.94401 0.90873 0.94691 1.21383 0.91904 1.38711 1.05681 0.93581 1.25663 1.02843 0.94487 0.94990 1.69983 1.36412 1.38659 1.09676 0.85505 0.80056 0.78171 0.77943 1.20149 1.19795 1.19738 1.22328 0.82795 0.73553 0.89328 1.90325 1.52720 1.51967 1.42195 1.22665 0.97218 1.08875 0.94538 1.22174 0.96873 1.05008 1.00238 1.23561 0.98682 1.04462 0.87494 1.46326 1.12619 1.37328 1.11276 1.22620 0.80702 1.04753 0.98137 1.73763 0.95645 1.14208 1.25733 0.92867 0.94059 0.92948 0.96046 0.90202 0.92547 0.82263 0.74965 0.88274 0.88772 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.66 71.98 0.62 -4.74 16 2 C -0.10 -5.11 5.23 30.60 0.16 -4.95 16 3 C 0.02 0.97 1.93 -12.28 -0.02 0.94 16 4 H 0.04 2.08 8.06 -2.39 -0.02 2.06 16 5 C -0.54 -33.06 8.33 25.60 0.21 -32.85 16 6 H 0.05 2.95 7.03 -2.91 -0.02 2.93 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -53.57 11.29 21.45 0.24 -53.33 16 9 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.44 22.85 5.90 27.98 0.17 23.01 16 14 O -0.50 -27.89 16.38 -2.99 -0.05 -27.93 16 15 C -0.08 -3.25 5.65 42.27 0.24 -3.02 16 16 C -0.22 -7.02 10.80 22.45 0.24 -6.78 16 17 C 0.00 0.00 11.48 83.42 0.96 0.96 16 18 N -0.29 -7.16 3.72 -369.03 -1.37 -8.53 16 19 C 0.08 0.94 11.32 127.77 1.45 2.39 16 20 N -0.25 -9.40 9.85 -48.45 -0.48 -9.88 16 21 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.04 1.69 5.53 -2.39 -0.01 1.68 16 23 H 0.05 2.20 8.03 -2.39 -0.02 2.18 16 24 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 4.50 5.95 -2.39 -0.01 4.48 16 26 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.16 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.23 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.14 0.52 8.13 -2.39 -0.02 0.51 16 Total: -1.00 -77.28 266.42 5.96 -71.32 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.12 Total: 3.48 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.47 Total: -23.44 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.61 Total: -71.74 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.05 Total: -27.93 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -77.28 5.96 -71.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394796758.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.123 kcal (2) G-P(sol) polarization free energy of solvation -77.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds